Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021835
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 90 4e-19
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 28 1.4
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 28 1.9
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 4.3
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 26 5.7
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 26 5.7
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 26 7.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 10.0
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 89.8 bits (213), Expect = 4e-19
Identities = 44/88 (50%), Positives = 63/88 (71%)
Frame = -2
Query: 761 SYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 582
+YD+TTIRAS PMYLLS+ IK + +V SGEG+DE+ GY+YF +APS + H E VR
Sbjct: 325 TYDVTTIRASTPMYLLSRKIKAQ-GVKMVLSGEGSDEIFGGYLYFGNAPSREAFHSECVR 383
Query: 581 LLSDIYLYDGLRADRTTSAFSLELQYRF 498
+ +++L D LRA+++T A+ LE + F
Sbjct: 384 RVKNLHLSDCLRANKSTMAWGLEARVPF 411
Score = 46.8 bits (106), Expect = 4e-06
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = -1
Query: 507 VPFLDIQFTHHYLSIPPKLRQPQNG-VEKHLLRSSFAK---SGL---LPDCVLWRHKEAF 349
VPFLD F L+I P+ + NG EK++LR +F S L LP +LWR KE F
Sbjct: 409 VPFLDKDFLEVALNIDPEEKMYINGRKEKYILRKAFDTTHDSSLQPYLPQDILWRQKEQF 468
Query: 348 SDGVSSVKKSLFSVIKEITTERLQEDDIQYP 256
SDGV S +K+ + +D+ P
Sbjct: 469 SDGVG---YSWIDALKDTAELCISDDEFALP 496
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -3
Query: 247 PKTNESKYYRYVFEKSFPGQHNFTPYYWMPK--WVQVSDPSARF-IKHYAA 104
P T E+ +YR +F++ FP Q T W+PK W DPS R+ H AA
Sbjct: 505 PTTKEAFWYRKLFDEIFPRQCADTVMRWVPKAEWGCPEDPSGRYQAGHVAA 555
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -1
Query: 261 YPDCSRKRMNPNITATYLRNHFQDNIILLRTIGCQNGF 148
Y +C +K P++ +LR H + + GC F
Sbjct: 27 YEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAF 64
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 277 RRRYTISRLQPKTNESKYYRYVFEKSFPGQHNF 179
R Y +S+L+ T++S+ + YVF P NF
Sbjct: 66 RPTYRLSKLEEVTSDSEPFDYVFVSIKPNSRNF 98
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -2
Query: 731 LPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDG 552
L + L++ +KEKTD + + + L Y +F + H + LS++YL
Sbjct: 444 LEISLMNDTLKEKTDIFTMLTNSLSSFLVTDYDFFLEL-----KHLIDISSLSNLYLDSS 498
Query: 551 LRADRTTSAFSLELQ 507
L A R +S+ Q
Sbjct: 499 LNAMRLLYGWSVYKQ 513
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 FMTENNDFLTEDTPSLNA---SLCRHSTQSG 385
+ T+N+ FL+ DTP L A +L + T+SG
Sbjct: 455 YTTQNSYFLSRDTPKLRALVDALRHYDTKSG 485
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 5.7
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -2
Query: 680 VVFSGEGADELAQGYIYFRDAPSEKD--AHKESVRLLSDIYLYDGL-RADRTTSAFSLEL 510
V+ SG GADE GY+ A K +E ++L D + L R DR S E+
Sbjct: 409 VLISGLGADEQLGGYMRHLRAFERKGMAGLEEELQLDIDRIPHRNLGRDDRVMSNQGKEV 468
Query: 509 QYRF*ISNSLITIFQYLLNYDNPKTAL 429
+Y F + L+ +F + D + L
Sbjct: 469 RYPF-LDERLMALFSKMKTTDKMRLDL 494
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 223 YRYVFEKSFPGQHNFTPYYWMPK 155
YR FE+ F G N Y W PK
Sbjct: 349 YRPDFEQCFTGDMNGNIYMWSPK 371
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 530 SAFSLELQYRF*ISNSLITIFQYLLNYDNPKTALRN 423
S +SL LQ+R S L I + L YD+P +LR+
Sbjct: 146 SLWSLSLQHRQLSSLILRGIMEDLYQYDDPVASLRS 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,670
Number of Sequences: 5004
Number of extensions: 68502
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -