Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021835
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1075 - 8770120-8770371,8770684-8770770,8770866-8770946,877...    92   4e-19
03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914...    90   2e-18
07_03_0812 - 21694348-21694632,21695392-21695574,21696366-21697526     29   4.5  
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    29   4.5  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    29   4.5  

>06_01_1075 -
           8770120-8770371,8770684-8770770,8770866-8770946,
           8771043-8771177,8771363-8771584,8771676-8771756,
           8771954-8772115,8772991-8773106,8774333-8774474,
           8774592-8774687,8774987-8775125,8776297-8776376
          Length = 530

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 42/88 (47%), Positives = 65/88 (73%)
 Frame = -2

Query: 761 SYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 582
           +YD+TTIRAS PM+L+S+ IK      +V SGEG+DE+  GY+YF  AP++K+ H+E+ R
Sbjct: 287 TYDVTTIRASTPMFLMSRKIKS-LGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCR 345

Query: 581 LLSDIYLYDGLRADRTTSAFSLELQYRF 498
            +  ++LYD LRA+++TSA+ +E +  F
Sbjct: 346 KIKALHLYDCLRANKSTSAWGVEARVPF 373


>03_02_0643 -
           10090720-10091007,10091121-10091228,10091314-10091400,
           10091488-10091568,10091669-10091803,10091919-10092140,
           10092377-10092457,10092565-10092726,10092851-10093041,
           10093190-10093331,10093449-10093547,10093668-10093806,
           10094355-10094392
          Length = 590

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 42/88 (47%), Positives = 64/88 (72%)
 Frame = -2

Query: 761 SYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 582
           +YD+TTIRAS PM+L+++ IK      +V SGEG+DEL  GY+YF  AP++++ HKE+ R
Sbjct: 299 TYDVTTIRASTPMFLMARKIKA-LGVKMVLSGEGSDELLGGYLYFHFAPNKEEFHKETCR 357

Query: 581 LLSDIYLYDGLRADRTTSAFSLELQYRF 498
            +  ++ YD LRA++ TSA+ LE++  F
Sbjct: 358 KVKALHQYDCLRANKATSAWGLEVRVPF 385



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 247 PKTNESKYYRYVFEKSFPGQHNFTPYYWMPKWVQVSDPSA 128
           P   E+ YYR +FE+ FP +       W P  +  S P+A
Sbjct: 477 PVNKEAYYYRMIFERLFPQESARETVPWGPS-IACSTPAA 515


>07_03_0812 - 21694348-21694632,21695392-21695574,21696366-21697526
          Length = 542

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 35  IYFYYHPKITLTLIIL*VYELSFCRIMFNKPCRRV*NLNPFWHPIV 172
           +YF   P++  TL+   VY     R++FN+ C+ + NL P  + +V
Sbjct: 336 VYFNRMPRLR-TLVPPAVYPYGLQRVLFNRSCQMLLNLCPSIYRVV 380


>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 488 NSLITIFQYLLNYDNPKTALRNIC*EVVLQKVDYCQTVCCGD 363
           NS+   F+ +LN  N   A +N+C   V    + C   CC D
Sbjct: 153 NSISACFKIILNSINSMDASKNLCSFAVGTPEERCNHSCCKD 194


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 324 KSLFSVIKEITTERLQEDDIQYPDC--SRKRMNPNITATYLRNHFQDNIILLRTIGC 160
           KSL + IKEI  ++ +EDD+       +R+ + PN++  Y+ ++  +++  +    C
Sbjct: 822 KSLLTEIKEINEKKRKEDDVLLAIAAGNRRPIVPNMSFDYVDSNIHEDMYKIIKYSC 878


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,193,164
Number of Sequences: 37544
Number of extensions: 384460
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)