Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021835
(831 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0) 127 1e-29
SB_32549| Best HMM Match : Asn_synthase (HMM E-Value=3.4e-33) 103 2e-22
SB_12098| Best HMM Match : p450 (HMM E-Value=1.7e-06) 30 2.6
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06) 29 3.5
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 4.6
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 28 8.1
>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
Length = 1663
Score = 127 bits (306), Expect = 1e-29
Identities = 57/88 (64%), Positives = 71/88 (80%)
Frame = -2
Query: 761 SYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 582
SYDITTIRAS+PMYL++KY+ E TDT VV+SGEG+DEL QGYIYF APS ++ KES+R
Sbjct: 1466 SYDITTIRASVPMYLVAKYVSENTDTVVVYSGEGSDELCQGYIYFHKAPSPEEGDKESLR 1525
Query: 581 LLSDIYLYDGLRADRTTSAFSLELQYRF 498
LL D+YLYD LR DR+T+ LE++ F
Sbjct: 1526 LLKDLYLYDVLRGDRSTAVHGLEIRVPF 1553
Score = 86.6 bits (205), Expect = 2e-17
Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Frame = -1
Query: 513 ITVPFLDIQFTHHYLSIPPKLRQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSDGVS 334
I VPFLD+ FT ++LS+PP RQP+ GVEK LLR++F +GLLP +LWR KEAFSDGV+
Sbjct: 1549 IRVPFLDVAFTSYFLSLPPAERQPKEGVEKWLLRAAFDGTGLLPHEILWRPKEAFSDGVT 1608
Query: 333 S--VKKSLFSVIK 301
S KS F +++
Sbjct: 1609 SNAPGKSWFEILQ 1621
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 247 PKTNESKYYRYVFEKSFP 194
P+T ES YYR VFE+ FP
Sbjct: 1645 PRTKESFYYRSVFEELFP 1662
>SB_32549| Best HMM Match : Asn_synthase (HMM E-Value=3.4e-33)
Length = 274
Score = 103 bits (247), Expect = 2e-22
Identities = 48/87 (55%), Positives = 62/87 (71%)
Frame = -2
Query: 758 YDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRL 579
YD I S+ +YLLSKY+ E T+T V++ GEGADEL QGY+YF APS + A +ES RL
Sbjct: 43 YDFDQICPSVALYLLSKYVHENTETVVLYCGEGADELCQGYVYFHKAPSAEMADQESRRL 102
Query: 578 LSDIYLYDGLRADRTTSAFSLELQYRF 498
L D+YL+D +R DR T+AF LE + F
Sbjct: 103 LKDLYLFDLVRVDRATAAFGLEARVPF 129
Score = 70.9 bits (166), Expect = 1e-12
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = -1
Query: 507 VPFLDIQFTHHYLSIPPKLRQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSDGVSSV 328
VPFLD+ FT +LS+P RQP+ GVEK LLR+++ +G+LP +LWR K FS GVS
Sbjct: 127 VPFLDVPFTSFFLSLPAVERQPRGGVEKWLLRAAYDGTGILPGEILWRTKTPFSTGVSGS 186
Query: 327 K--KSLFSVIKEITTERLQEDD 268
+ KS I+ R+ + +
Sbjct: 187 QPGKSWLEYIEVYAEHRVSDGE 208
>SB_12098| Best HMM Match : p450 (HMM E-Value=1.7e-06)
Length = 403
Score = 29.9 bits (64), Expect = 2.6
Identities = 31/125 (24%), Positives = 56/125 (44%)
Frame = -2
Query: 779 RYLPFRSYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDA 600
+YLPF +Y T A +L + + E+ T + +L + R +E D
Sbjct: 253 KYLPFETYRKTKEMADYVFNVLKEVVDERNKT--FDPSQPTTDLLTALLKAR-LEAEFDT 309
Query: 599 HKESVRLLSDIYLYDGLRADRTTSAFSLELQYRF*ISNSLITIFQYLLNYDNPKTALRNI 420
+E LL+D YL + L D + ++ +S++L + YL+NY + + + N
Sbjct: 310 IEEKQVLLADKYLLNTL-TDMFIAGYAT-------VSDTLRWLIVYLVNYPHIQEEIHNA 361
Query: 419 C*EVV 405
+VV
Sbjct: 362 LDKVV 366
>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 225 ITATYLRNHFQDNIILLRTIGCQNGF 148
IT T+LRNH +N+I + +G + F
Sbjct: 471 ITETWLRNHIHNNVIAVSALGMSDHF 496
>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
Length = 773
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 225 ITATYLRNHFQDNIILLRTIGCQNGF 148
IT T+LRNH +N+I + +G + F
Sbjct: 182 ITETWLRNHIHNNVIAVSALGMSDHF 207
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 516 RITVPFLDIQFTHHYLSIPPKLRQPQ 439
R V FL T H+ S+ PKL QPQ
Sbjct: 475 RTLVGFLSFDSTVHFYSLKPKLTQPQ 500
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 698 EKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFS 519
+ ++ ++ E L I FRD+ SEKD +R L++ Y D S
Sbjct: 1018 QSIESEIIQRNEENSLLQSQLISFRDSTSEKDEELHKLRALTEEYKLKCEELDAKVSGLG 1077
Query: 518 LELQ 507
EL+
Sbjct: 1078 EELE 1081
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,308,776
Number of Sequences: 59808
Number of extensions: 472572
Number of successful extensions: 1219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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