Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021835
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical pr... 90 2e-18
U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical pr... 90 2e-18
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 75 5e-14
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z29116-2|CAA82368.3| 374|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical pr... 28 9.4
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 28 9.4
>U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical
protein M02D8.4c protein.
Length = 538
Score = 90.2 bits (214), Expect = 2e-18
Identities = 44/88 (50%), Positives = 63/88 (71%)
Frame = -2
Query: 761 SYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 582
SYD+T+IRAS PMY LS+ I+ K VV SGEGADE+ GY+YF +APS++D KE++
Sbjct: 311 SYDVTSIRASTPMYFLSEEIR-KLGIKVVLSGEGADEIFGGYLYFHNAPSDEDFQKETID 369
Query: 581 LLSDIYLYDGLRADRTTSAFSLELQYRF 498
+ +Y D LRAD+++ A S+E++ F
Sbjct: 370 RVLHLYTSDCLRADKSSMAHSVEVRVPF 397
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = -1
Query: 513 ITVPFLDIQFTHHYLSIPPKLRQPQN-----GVEKHLLRSSFAKSGL--LPDCVLWRHKE 355
+ VPFLD F +S+ P ++PQ EK +LRS+F LPD +LWR KE
Sbjct: 393 VRVPFLDKAFVEAAVSLDPAFKRPQKLEDGRNCEKFVLRSAFNTDQYPYLPDEILWRQKE 452
Query: 354 AFSDGV 337
FSDGV
Sbjct: 453 QFSDGV 458
Score = 35.9 bits (79), Expect = 0.036
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 247 PKTNESKYYRYVFEKSFPG-QHNFTPYYWMPKWVQVSDPS 131
P + E+ Y R +F + FP Q T W+PKW + DPS
Sbjct: 491 PHSKEAFYMRKIFHEQFPSEQAALTVRKWIPKWQKNQDPS 530
>U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical
protein M02D8.4a protein.
Length = 567
Score = 90.2 bits (214), Expect = 2e-18
Identities = 44/88 (50%), Positives = 63/88 (71%)
Frame = -2
Query: 761 SYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 582
SYD+T+IRAS PMY LS+ I+ K VV SGEGADE+ GY+YF +APS++D KE++
Sbjct: 311 SYDVTSIRASTPMYFLSEEIR-KLGIKVVLSGEGADEIFGGYLYFHNAPSDEDFQKETID 369
Query: 581 LLSDIYLYDGLRADRTTSAFSLELQYRF 498
+ +Y D LRAD+++ A S+E++ F
Sbjct: 370 RVLHLYTSDCLRADKSSMAHSVEVRVPF 397
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = -1
Query: 513 ITVPFLDIQFTHHYLSIPPKLRQPQN-----GVEKHLLRSSFAKSGL--LPDCVLWRHKE 355
+ VPFLD F +S+ P ++PQ EK +LRS+F LPD +LWR KE
Sbjct: 393 VRVPFLDKAFVEAAVSLDPAFKRPQKLEDGRNCEKFVLRSAFNTDQYPYLPDEILWRQKE 452
Query: 354 AFSDGV 337
FSDGV
Sbjct: 453 QFSDGV 458
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 247 PKTNESKYYRYVFEKSFPG-QHNFTPYYWMPKWVQVSDPSAR 125
P + E+ Y R +F + FP Q T W+PKW + DPS R
Sbjct: 491 PHSKEAFYMRKIFHEQFPSEQAALTVRKWIPKWQKNQDPSGR 532
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 75.4 bits (177), Expect = 5e-14
Identities = 36/88 (40%), Positives = 53/88 (60%)
Frame = -2
Query: 761 SYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 582
++D IR + YLL ++I + +D V+ SGEGADEL Y Y + AP+ HKE +R
Sbjct: 306 TFDPLIIRCGIAHYLLCQHISKSSDVKVLLSGEGADELFGSYAYMQRAPNALHLHKEILR 365
Query: 581 LLSDIYLYDGLRADRTTSAFSLELQYRF 498
+ ++ YD LR DR+TS LE++ F
Sbjct: 366 RMHHLHQYDVLRCDRSTSCHGLEIRVPF 393
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = -1
Query: 528 CL*FRITVPFLDIQFTHHYLSIPPKLRQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAF 349
C I VPFLD +F +PP + +EKH+LRS+F G LPD VLWR KE F
Sbjct: 384 CHGLEIRVPFLDKRFIDLVSRLPPSYKLMPMKLEKHVLRSAF--EGWLPDEVLWRSKEGF 441
Query: 348 SDGVSSVKKSLFSVIKE 298
++ + K L ++ E
Sbjct: 442 AEALG--KTDLGDILAE 456
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -3
Query: 733 VCQCTFCQSILKKKQTQQWYLAEKEPMN*RKAISTSE---THRLKRTHIKRAYVC 578
+C FC S + Q + + RK IS+SE TH K+ HI R Y+C
Sbjct: 55 ICSKVFCHSSSLSRHRMQAHFKSYKCTVCRKDISSSESLRTHMFKQHHISRMYMC 109
>Z29116-2|CAA82368.3| 374|Caenorhabditis elegans Hypothetical
protein ZK507.3 protein.
Length = 374
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 221 VIFGFIRFRLQSGYCISSSCNLSVVISFMTENNDFLTEDTPSLNASLCRHSTQSG 385
V FGF+R + + Y S L + + E ND + TP+ +A+ C S+ +G
Sbjct: 271 VKFGFLRDAI-TDYARSCKLTLKEPLVWFKERNDNESGSTPTTSATACSPSSSTG 324
>Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical
protein T01B4.2c protein.
Length = 712
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 740 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 654
+ S M LL KYI++K +V+FS + AD
Sbjct: 17 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 45
>Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical
protein T01B4.2b protein.
Length = 733
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 740 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 654
+ S M LL KYI++K +V+FS + AD
Sbjct: 38 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 66
>Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical
protein T01B4.2a protein.
Length = 757
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 740 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 654
+ S M LL KYI++K +V+FS + AD
Sbjct: 62 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 90
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 266 ISSSCNLSVVISFMTENNDFLTEDTPSLNASLCRHSTQSGNNPL 397
+SSSC S+ I + E DF T T + LC +S +P+
Sbjct: 275 LSSSCQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPV 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,192
Number of Sequences: 27780
Number of extensions: 376660
Number of successful extensions: 1109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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