Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021834
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 282 5e-77
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 180 3e-46
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 177 2e-45
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 159 6e-40
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 4.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.3
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 7.5
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 7.5
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 9.9
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 25 9.9
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 9.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 282 bits (691), Expect = 5e-77
Identities = 133/192 (69%), Positives = 153/192 (79%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VL
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVR+EAE+CD LQGFQLTHSLGGGT +SKIREEYPDR+M T+SV P+PK SD
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLS+HQLVEN+DET+CIDNEAL I K LVS M+GVT
Sbjct: 178 TVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVT 237
Query: 793 TCLRFPGQLNAD 828
T RFPG+LN+D
Sbjct: 238 TSFRFPGELNSD 249
Score = 99 bits (238), Expect = 4e-22
Identities = 41/57 (71%), Positives = 48/57 (84%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGG 57
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 180 bits (437), Expect = 3e-46
Identities = 82/192 (42%), Positives = 121/192 (63%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL
Sbjct: 64 KFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVL 123
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
+ +R+ A++C LQGF + HS GGGT + ++ EY + +SV P+P+VS
Sbjct: 124 ERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVST 183
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
+VVEPYN+ L+ H ++N+D T+ +DNEA YDIC + L++ +S +T
Sbjct: 184 SVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSIT 243
Query: 793 TCLRFPGQLNAD 828
LRF G LN D
Sbjct: 244 ASLRFAGSLNVD 255
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG 250
MRE++ + GQ G QIG WE+ EHGI P G +S ++ + N Y N+ G
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFG 54
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 177 bits (430), Expect = 2e-45
Identities = 81/192 (42%), Positives = 118/192 (61%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V
Sbjct: 60 KYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
D +R+ A++C LQGF + HS GGGT + + ++ EY + +SV P+P+VS
Sbjct: 120 DKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
+VVEPYN+ L+ H ++ D T+ +DNE+ YDIC + L++ +S +T
Sbjct: 180 SVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSIT 239
Query: 793 TCLRFPGQLNAD 828
LRF G LN D
Sbjct: 240 ASLRFEGSLNVD 251
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG 184
MREI+ I GQ G QIG WE+ EHGI P G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 159 bits (385), Expect = 6e-40
Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 3/195 (1%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDS 426
+Y+PRAIL+DLEP ++++ S +G ++ P+N + ++G AGNNWA G Y+ + +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 427 VLDVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVP-SPK 603
++D++ +EA+ D L+GF L HS+ GGT + ++ + YP +I+ TYSV P S
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQS 177
Query: 604 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMS 783
VSD VV+PYN+ L++ +L N D +DN AL I T + + LVS MS
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMS 237
Query: 784 GVTTCLRFPGQLNAD 828
TT LR+PG +N D
Sbjct: 238 ASTTTLRYPGYMNND 252
Score = 56.4 bits (130), Expect = 5e-09
Identities = 23/53 (43%), Positives = 37/53 (69%)
Frame = +2
Query: 86 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 244
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 122 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 223
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 4.3
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -2
Query: 527 GAHTGTVPPPSECVSWNPWR-QSH---DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDC 360
G T+ P + +N R ++H ++A+ RTTS T+ +PS L P P
Sbjct: 363 GEKMDTIHYPDDLSYFNSSRSKAHVNKNAAADRTTSPTQGQPESPS---KSILLRPPPSI 419
Query: 359 PKTKLSGRKICPK 321
+ S R+ CPK
Sbjct: 420 ASSPESKRRKCPK 432
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 316 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 417
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 385 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 474
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 337 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 468
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +1
Query: 556 YPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAK 729
+ D + + +V+ S K++ +V P A S L+++ + +C+ +YD P+ K
Sbjct: 782 FKDMEVPSATVIISIKMAHLLVTP-KAPYSFSVLLQDPESEFCVHTRDVYDELVPNWK 838
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -3
Query: 235 VVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTSLDM 98
++Y+DA L +++ + G A V DLP L +D V++L S+ +
Sbjct: 511 ILYVDAKTLFIQLLRLLPSGHPATRVPLDLP-LIADSVSSLKSMSL 555
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 700 LYDICFPHAKTIHTHI 747
LY I FP+A + HTHI
Sbjct: 169 LYTILFPYAGSEHTHI 184
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 374 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 279
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,684
Number of Sequences: 5004
Number of extensions: 68622
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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