Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021834
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    31   0.010
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.0  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +1

Query: 418 VDSVLDVVRKEAESCDCLQGFQ--LTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVV 591
           +DS+++++R   ++CD L G    +   LG  TV +  P  I  I +   D+I+  Y + 
Sbjct: 106 IDSIINIIRVRVDACDRLWGVDTGVDDILGNNTV-IHQPRII--IIDLKTDKILRIYPLK 162

Query: 592 PSPKVSDTVVEPYNATLSVHQLVENTDETY 681
            S + SD+    +   L +     N D TY
Sbjct: 163 SSDQTSDS----FFVDLVIDVDPNNCDNTY 188


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 148 LPELSSDLVAALTSLDMYDFPHFVLFM 68
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 378  VTGAGLSEDEVVRTEDLSERSRADR-VHGAGLQVDED 271
            ++ AG  +++  R     +RS  +R VH  G Q D D
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 799 GTSSRRTWSATPVVQVAVCGCG 734
           G S  +TWS + V  VAV G G
Sbjct: 901 GQSGGQTWSNSQVQGVAVPGSG 922


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 517 PEPCRRRASVSVGIPGGNHTIPLPFER 437
           P P  RR + S   PG N  + +P  R
Sbjct: 84  PHPRLRREAESEAEPGNNRPVYIPQPR 110


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/43 (20%), Positives = 19/43 (44%)
 Frame = +1

Query: 496 LGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSDTVVE 624
           +G G +P+      ++   +Y D   N  S  P     +T+++
Sbjct: 334 VGSGEIPLEEEEWENENESDYQDAFCNIVSCSPQTVHPETIID 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,547
Number of Sequences: 438
Number of extensions: 4888
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)