Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021834
(828 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 318 4e-87
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 316 9e-87
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 315 3e-86
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 314 4e-86
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 314 6e-86
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 312 2e-85
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 312 2e-85
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 312 2e-85
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 310 6e-85
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 173 2e-43
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 173 2e-43
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 173 2e-43
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 173 2e-43
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 172 2e-43
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 172 2e-43
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 171 4e-43
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 141 4e-34
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 140 8e-34
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 38 0.011
At4g37190.1 68417.m05265 expressed protein 31 1.2
At3g14310.1 68416.m01810 pectinesterase family protein contains ... 30 2.2
At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote... 29 2.8
At5g24010.1 68418.m02821 protein kinase family protein contains ... 29 3.8
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 29 3.8
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 5.0
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to... 28 8.7
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to... 28 8.7
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 28 8.7
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 28 8.7
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 28 8.7
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 318 bits (780), Expect = 4e-87
Identities = 149/192 (77%), Positives = 162/192 (84%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVL
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K + L+S TMSGVT
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVT 237
Query: 793 TCLRFPGQLNAD 828
CLRFPGQLN+D
Sbjct: 238 CCLRFPGQLNSD 249
Score = 104 bits (250), Expect = 6e-23
Identities = 46/57 (80%), Positives = 50/57 (87%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGG 57
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 316 bits (777), Expect = 9e-87
Identities = 149/192 (77%), Positives = 161/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVL
Sbjct: 58 RYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K L+S TMSGVT
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 237
Query: 793 TCLRFPGQLNAD 828
CLRFPGQLN+D
Sbjct: 238 CCLRFPGQLNSD 249
Score = 103 bits (247), Expect = 1e-22
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCG 57
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 315 bits (773), Expect = 3e-86
Identities = 148/192 (77%), Positives = 161/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVL
Sbjct: 58 RFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K L+S TMSGVT
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
Query: 793 TCLRFPGQLNAD 828
CLRFPGQLN+D
Sbjct: 238 CCLRFPGQLNSD 249
Score = 104 bits (250), Expect = 6e-23
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCG 57
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 314 bits (772), Expect = 4e-86
Identities = 148/192 (77%), Positives = 161/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VL
Sbjct: 58 RYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K L+S TMSGVT
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
Query: 793 TCLRFPGQLNAD 828
CLRFPGQLN+D
Sbjct: 238 CCLRFPGQLNSD 249
Score = 109 bits (262), Expect = 2e-24
Identities = 46/57 (80%), Positives = 52/57 (91%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCG 57
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 314 bits (770), Expect = 6e-86
Identities = 148/192 (77%), Positives = 161/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVL
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+ DCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 118 DVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K + L+S TMSGVT
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVT 237
Query: 793 TCLRFPGQLNAD 828
CLRFPGQLN+D
Sbjct: 238 CCLRFPGQLNSD 249
Score = 107 bits (256), Expect = 1e-23
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGG 57
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 312 bits (765), Expect = 2e-85
Identities = 146/192 (76%), Positives = 160/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVL
Sbjct: 58 RFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K L+S TMSGVT
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
Query: 793 TCLRFPGQLNAD 828
CLRFPGQLN+D
Sbjct: 238 CCLRFPGQLNSD 249
Score = 110 bits (264), Expect = 1e-24
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCG 57
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 312 bits (765), Expect = 2e-85
Identities = 146/192 (76%), Positives = 160/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVL
Sbjct: 58 RFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 177
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K L+S TMSGVT
Sbjct: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
Query: 793 TCLRFPGQLNAD 828
CLRFPGQLN+D
Sbjct: 238 CCLRFPGQLNSD 249
Score = 110 bits (264), Expect = 1e-24
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCG 57
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 312 bits (765), Expect = 2e-85
Identities = 147/192 (76%), Positives = 160/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VL
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 119 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 178
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K L+S TMSGVT
Sbjct: 179 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 238
Query: 793 TCLRFPGQLNAD 828
LRFPGQLN+D
Sbjct: 239 CSLRFPGQLNSD 250
Score = 107 bits (258), Expect = 7e-24
Identities = 48/58 (82%), Positives = 52/58 (89%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGG 253
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGG 58
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 310 bits (762), Expect = 6e-85
Identities = 146/192 (76%), Positives = 160/192 (83%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VL
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
DVVRKEAE+CDCLQGFQ+ HSLGGGT ISKIREEYPDR+M T+SV PSPKVSD
Sbjct: 119 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD 178
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
TVVEPYNATLSVHQLVEN DE +DNEALYDICF K L+S TMSGVT
Sbjct: 179 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 238
Query: 793 TCLRFPGQLNAD 828
LRFPGQLN+D
Sbjct: 239 CSLRFPGQLNSD 250
Score = 112 bits (269), Expect = 3e-25
Identities = 48/58 (82%), Positives = 54/58 (93%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGG 253
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGG 58
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 173 bits (420), Expect = 2e-43
Identities = 84/195 (43%), Positives = 125/195 (64%), Gaps = 3/195 (1%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
D VRK A++C LQGF + +++GGGT + ++ +Y + +++ PSP+VS
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDIC---FPHAKTIHTHIRRPEPLVSLTMS 783
VVEPYN+ LS H L+E+TD +DNEA+YDIC + +T++ R L+S +S
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR---LISQIIS 236
Query: 784 GVTTCLRFPGQLNAD 828
+TT LRF G +N D
Sbjct: 237 SLTTSLRFDGAINVD 251
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGG 253
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 173 bits (420), Expect = 2e-43
Identities = 84/195 (43%), Positives = 125/195 (64%), Gaps = 3/195 (1%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
D VRK A++C LQGF + +++GGGT + ++ +Y + +++ PSP+VS
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDIC---FPHAKTIHTHIRRPEPLVSLTMS 783
VVEPYN+ LS H L+E+TD +DNEA+YDIC + +T++ R L+S +S
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR---LISQIIS 236
Query: 784 GVTTCLRFPGQLNAD 828
+TT LRF G +N D
Sbjct: 237 SLTTSLRFDGAINVD 251
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGG 253
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 173 bits (420), Expect = 2e-43
Identities = 85/195 (43%), Positives = 126/195 (64%), Gaps = 3/195 (1%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
D +RK A++C LQGF + +++GGGT + ++ +Y + ++V PSP+VS
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDIC---FPHAKTIHTHIRRPEPLVSLTMS 783
+VVEPYN+ LS H L+E+TD + +DNEA+YDIC + +T++ R LVS +S
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNR---LVSQVIS 236
Query: 784 GVTTCLRFPGQLNAD 828
+T LRF G LN D
Sbjct: 237 SLTASLRFDGALNVD 251
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 253
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAG 59
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 173 bits (420), Expect = 2e-43
Identities = 85/195 (43%), Positives = 126/195 (64%), Gaps = 3/195 (1%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
D +RK A++C LQGF + +++GGGT + ++ +Y + ++V PSP+VS
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDIC---FPHAKTIHTHIRRPEPLVSLTMS 783
+VVEPYN+ LS H L+E+TD + +DNEA+YDIC + +T++ R LVS +S
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNR---LVSQVIS 236
Query: 784 GVTTCLRFPGQLNAD 828
+T LRF G LN D
Sbjct: 237 SLTASLRFDGALNVD 251
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 253
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAG 59
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 172 bits (419), Expect = 2e-43
Identities = 83/192 (43%), Positives = 120/192 (62%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
D +RK A++C LQGF + +++GGGT + ++ +Y + ++V PSP+VS
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
+VVEPYN+ LS H L+E+TD + +DNEA+YDIC LVS +S +T
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLT 239
Query: 793 TCLRFPGQLNAD 828
LRF G LN D
Sbjct: 240 ASLRFDGALNVD 251
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 253
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAG 59
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 172 bits (419), Expect = 2e-43
Identities = 83/192 (43%), Positives = 120/192 (62%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
++VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
D +RK A++C LQGF + +++GGGT + ++ +Y + ++V PSP+VS
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
+VVEPYN+ LS H L+E+TD + +DNEA+YDIC LVS +S +T
Sbjct: 180 SVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLT 239
Query: 793 TCLRFPGQLNAD 828
LRF G LN D
Sbjct: 240 ASLRFDGALNVD 251
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGG 253
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAG 59
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 171 bits (417), Expect = 4e-43
Identities = 80/192 (41%), Positives = 121/192 (63%)
Frame = +1
Query: 253 QYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 432
Q+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L
Sbjct: 60 QHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCL 119
Query: 433 DVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSD 612
+ +RK A++C LQGF + +++GGGT + ++ ++ + +++ PSP+VS
Sbjct: 120 ERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVST 179
Query: 613 TVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTMSGVT 792
VVEPYN+ LS H L+E+TD +DNEA+YDIC L+S T+S +T
Sbjct: 180 AVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLT 239
Query: 793 TCLRFPGQLNAD 828
T LRF G +N D
Sbjct: 240 TSLRFDGAINVD 251
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGG 253
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSG 59
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 141 bits (342), Expect = 4e-34
Identities = 69/196 (35%), Positives = 111/196 (56%), Gaps = 3/196 (1%)
Frame = +1
Query: 250 RQYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVD 423
+ Y+PRA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + +
Sbjct: 58 QHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEE 116
Query: 424 SVLDVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSP- 600
++D++ +EA+ D L+GF L HS+ GGT + + + Y +++ TYSV P+
Sbjct: 117 EIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQM 176
Query: 601 KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTM 780
+ SD VV+PYN+ L++ +L N D +DN AL I + + LVS M
Sbjct: 177 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVM 236
Query: 781 SGVTTCLRFPGQLNAD 828
S TT LR+PG +N D
Sbjct: 237 SASTTTLRYPGYMNND 252
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +2
Query: 86 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 244
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 140 bits (340), Expect = 8e-34
Identities = 69/196 (35%), Positives = 111/196 (56%), Gaps = 3/196 (1%)
Frame = +1
Query: 250 RQYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVD 423
+ Y+PRA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + +
Sbjct: 58 QHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEE 116
Query: 424 SVLDVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSP- 600
++D++ +EA+ D L+GF L HS+ GGT + + + Y +++ TYSV P+
Sbjct: 117 EIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQM 176
Query: 601 KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFPHAKTIHTHIRRPEPLVSLTM 780
+ SD VV+PYN+ L++ +L N D +DN AL I + + LVS M
Sbjct: 177 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVM 236
Query: 781 SGVTTCLRFPGQLNAD 828
S TT LR+PG +N D
Sbjct: 237 SASTTTLRYPGYMNND 252
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +2
Query: 86 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 244
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +1
Query: 415 LVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVP 594
+++SV VVRKEAE+C+CLQ F ++ S +V A RE D + Y V
Sbjct: 1 MINSV-GVVRKEAENCNCLQVFFVSGSFKVDSVE--AKKKEENFRETLRDMANSKYEYVK 57
Query: 595 SPKVSDTVVEP 627
S ++ D V+ P
Sbjct: 58 SFELEDEVMLP 68
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 83 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 172
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At3g14310.1 68416.m01810 pectinesterase family protein contains
Pfam profiles: PF01095 pectinesterase, PF04043 plant
invertase/pectin methylesterase inhibitor ;similar to
pectin methylesterase GB:Q42534 from [Arabidopsis
thaliana]
Length = 592
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 643 SVHQLVENTDETYCIDNEALYDI-CFPHAKTIHTHIRRPEPLVSLTMSGVTTCL 801
++H +E DET +E + D+ +P KT+ H + L+S ++ TCL
Sbjct: 126 ALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCL 179
>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
contains Pfam PF00786: P21-Rho-binding domain
Length = 220
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 524 AHTGTVPPPSECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKL 345
AH G+ P + SW + ++ + + S+ ++ ++ L +LLP D PK K
Sbjct: 38 AHIGSDGPATNVPSWMGDFKPQENENGQVVSRADANNNQIGEGVGLQELLPPTDKPKHKK 97
Query: 344 SGRK 333
+ RK
Sbjct: 98 TRRK 101
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 497 SECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQL 378
SE W P R+ S++ RTT +T S+S ++ A+L
Sbjct: 443 SESTGWTPLRRFRGSSNSRTTERTVSSSGYHTLRISFAEL 482
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +1
Query: 466 CLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLS 645
CL+ LT GTVP + +S E+Y I + V+ +D ++ + TL
Sbjct: 257 CLEDSSLTRIQIPGTVPTYWETSMSSWMEDY-RAIEGSEVVIAHSGKTDVLISRFGETLK 315
Query: 646 VHQLVENTDETYCIDNEALYDI 711
V +E + ID+ A +D+
Sbjct: 316 GGISVTRMEEKWTIDDVA-FDV 336
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 490 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 377
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +1
Query: 436 VVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSDT 615
+VRK+ +S D L G +LT L V V + + + Y+V V D
Sbjct: 210 LVRKKVDSVDQLLGSKLTGHLKPRYVRV---NTLKMDVDSAVQELEKHYTVQKDETVPDL 266
Query: 616 VVEPYNATLSVHQLVEN 666
+V P + L H+LV N
Sbjct: 267 LVLPPGSDLHAHRLVAN 283
>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 567
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +1
Query: 436 VVRKEAESCDCLQGFQLTHSLGGGTVPVWAPXXISKIREEYPDRIMNTYSVVPSPKVSDT 615
+VRK+ +S D L G +LT L V V + + + Y+V V D
Sbjct: 210 LVRKKVDSVDQLLGSKLTGHLKPRYVRV---NTLKMDVDSAVQELEKHYTVQKDETVPDL 266
Query: 616 VVEPYNATLSVHQLVEN 666
+V P + L H+LV N
Sbjct: 267 LVLPPGSDLHAHRLVAN 283
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +1
Query: 565 RIMNTYSVVPSPKVSDTVVEPYNATLSV----HQLVENTDE--TYCIDNEALYDICFPHA 726
R+ N YS +P+ + + + Y+AT++V +Q+V+ T++ T E L D P
Sbjct: 115 RVHNVYSSLPAYSLDELLGPKYSATVTVGGRTNQVVQTTEQASTSGTAKEVLRDSDSPVE 174
Query: 727 KTIHTH 744
K I T+
Sbjct: 175 KKIKTN 180
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = -2
Query: 500 PSECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKI--C 327
PS +S +P SH + + TT+ + STSS+ SV ++ P+P +T S +
Sbjct: 48 PSRYLSPSP---SHSTTTTTTTATSTSTSSSSSVILRSSKRYPSPLLSRTTNSASNLVYT 104
Query: 326 PKG-PERTESM 297
P P+R++S+
Sbjct: 105 PSSLPKRSQSV 115
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = -2
Query: 500 PSECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKI--C 327
PS +S +P SH + + TT+ + STSS+ SV ++ P+P +T S +
Sbjct: 48 PSRYLSPSP---SHSTTTTTTTATSTSTSSSSSVILRSSKRYPSPLLSRTTNSASNLVYT 104
Query: 326 PKG-PERTESM 297
P P+R++S+
Sbjct: 105 PSSLPKRSQSV 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,659
Number of Sequences: 28952
Number of extensions: 387575
Number of successful extensions: 1135
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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