Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021833
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   0.83 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.83 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    29   1.1  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.9  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    28   1.9  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   3.3  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   4.4  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    27   4.4  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    26   5.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.8  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   7.7  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 487 SPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKSSACFLS 329
           SPF S S     ++    SSF +SS S+  TL  ++ S ++      SA F S
Sbjct: 292 SPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTS 344



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 484 PFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKSSACFLS 329
           PF S S     ++    SSF +S+ S+  TL  ++ S ++      SA F S
Sbjct: 347 PFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTS 398


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -2

Query: 487 SPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKSSA 341
           SP  S S SKF + +F  S+  ASS S    +  A  +++ DS+  SSA
Sbjct: 211 SPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTASTDDSSSASSA 259


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +3

Query: 279 VEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFKFGN 458
           V FEKS ++  E + E + K+ E+FK   +D + +AV  V  +DF     E+   + +  
Sbjct: 76  VSFEKSDQNLAETKREEENKRTEVFK---KDAEHEAV--VVKRDFRPRRPEQTRPYTYDF 130

Query: 459 LETDADKK 482
           L    + K
Sbjct: 131 LRHQIEFK 138


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 282 EFEKSMKSNHEIQHENDKKQAELFKAESQDVDID-AVNKVTAQDFE 416
           E EK +K+ H++  + DKK  EL K    D+  D    K  A D E
Sbjct: 148 ELEKQVKTLHDLNEQKDKKIKEL-KERINDLTYDYETLKANADDSE 192


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = -2

Query: 502 SVDVLSPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDS 359
           S  V + F + S  ++PN  + Y +  ++++++ ++L   S+  +WD+
Sbjct: 256 SPPVHTNFTNGSFPQYPNGTYMYPAAVSTNRTFPLSLPGQSVELAWDA 303


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +3

Query: 252 KKYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANE 431
           KK KE +L +E EK  K+N++I  +++ + A+  +       +  + K+  Q  EDA   
Sbjct: 59  KKEKERILALE-EK--KTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDA--- 112

Query: 432 EYSKFKFGNLETDADKK 482
           E  K     +E D  ++
Sbjct: 113 EQRKKILAEIERDKKRR 129


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 133 ITYYHRLLIRSISSKPAWDILTGICIERLPVVTPPLTEMQKNIKNFY 273
           +TY HR+L     +   + +LT +C+    + TP  T  +K  +++Y
Sbjct: 546 VTYLHRILNAIKETYSGYLLLTVLCMRLNIIKTPSFTLDEKIQESYY 592


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 508 HRSVDVLSPFLSASVSKFPNLNFEYSSFAASSKSWAVTLLTASISTSWDSALKSSACF 335
           +R  D+ S   S       NLNF+  ++  SSK WA+    + ++ + D + +++  F
Sbjct: 314 YRMKDIESKLQSEGRGFIHNLNFKAKNY--SSKEWALVSSASFVNVAQDYSQQNNCLF 369


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 309 HEIQHENDKKQAELFKAESQDVDIDAVNKVTAQD 410
           HE+ H+  K    L + E   +D+D +  +  QD
Sbjct: 66  HEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQD 99


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 306 NHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEY 437
           +H +  +ND      F+ E +D+D D  ++V   +  +AA  +Y
Sbjct: 436 DHPLDDDNDVNDLLDFETEREDID-DLTDEVMETEENEAAEADY 478


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 324 ENDKKQAELFKAESQDVDIDAVN-KVTAQDFEDAANEEYSKFKFGNLETDADKKGDKTST 500
           + DK   E    E +D D+DAV+ K   +D E    E+ ++      +T   K+ ++T  
Sbjct: 31  DQDKNPEENVMNEKEDEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPK 90

Query: 501 E 503
           E
Sbjct: 91  E 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,980
Number of Sequences: 5004
Number of extensions: 64740
Number of successful extensions: 237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)