Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021833
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0120 + 8506444-8506489,8507760-8507821,8508548-8509095,850... 32 0.66
11_05_0053 + 18687430-18687524,18687804-18687936,18688153-186882... 31 1.2
03_06_0261 + 32724726-32724738,32724836-32725278,32728132-32728137 31 1.5
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 30 2.0
03_03_0235 - 15688002-15688040,15688146-15688184,15688270-156885... 30 2.0
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 30 2.7
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 2.7
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843... 29 3.5
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 29 6.2
12_02_0454 + 19199063-19200757,19202201-19202287 28 8.1
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526... 28 8.1
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 28 8.1
04_03_0643 + 18328807-18331969,18332560-18332627 28 8.1
03_03_0190 + 15293589-15293606,15293790-15293863,15294009-152941... 28 8.1
>11_02_0120 +
8506444-8506489,8507760-8507821,8508548-8509095,
8509381-8509537
Length = 270
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 533 TQRKLGNDSKTLLPQGHWQEGETLRQTAERIVK 631
T+ K+GN SK HW EG++L++ A I K
Sbjct: 111 TEIKVGNGSKVCFWTDHWLEGKSLQEIAPSIFK 143
>11_05_0053 +
18687430-18687524,18687804-18687936,18688153-18688236,
18689045-18689194,18689319-18689510
Length = 217
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +2
Query: 506 VLQRHLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKFISNAPCG 685
VL+R VL+ +D + P+G W++ E++ + A R E+ G + +S P G
Sbjct: 55 VLERLQVLMISTPKRSD--LIFPKGGWEDDESIGEAACREAFEEAGVK---GVLSGTPLG 109
Query: 686 FYKYKYPSEMN--GKVGAKIFFYYANYKVAILQS 781
+ +K S+ N G GA + +A +L+S
Sbjct: 110 EWIFKSKSKQNSCGLQGACKGYMFALQVTELLES 143
>03_06_0261 + 32724726-32724738,32724836-32725278,32728132-32728137
Length = 153
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 279 VEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFKFGN 458
V ++S N E ++E+D L E DVD D + + +D ED A E KF
Sbjct: 93 VAADRSGAHNQEDENEHDMFIPSLLGGEIVDVDHDLLQNM-LRDVEDPAQNERDGMKFSR 151
Query: 459 L 461
L
Sbjct: 152 L 152
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 623 FFQQSDVVSRPPANAPEEVMSLNHFLIS 540
F +QSD S PP + P + + LN FL+S
Sbjct: 771 FKKQSDSHSGPPVDVPAQTIRLNSFLVS 798
>03_03_0235 -
15688002-15688040,15688146-15688184,15688270-15688558,
15688641-15688811,15688907-15689400,15690377-15690819,
15690921-15690933
Length = 495
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 288 EKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFKFGN-LE 464
++S N E + E+D L E DVD + + + +D ED A E KF L+
Sbjct: 96 DRSGAHNQEDEDEHDMFIPSLLGGEMVDVDHNLLQDI-LRDVEDPAQNERDGMKFIRLLQ 154
Query: 465 TDADKKGDKTSTE 503
D D D+T +
Sbjct: 155 YDTDFGEDRTEAD 167
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 424 QMKSIQNLNLEI*KQMQTKKVTKHQQNGVTTTS-SSC 531
+M+S+Q +NL++ + T KV + GV T SSC
Sbjct: 416 EMESVQEINLQLLSSLDTTKVKDKKDRGVLTIKVSSC 452
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 252 KKYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAV 389
KK++E L + ++ S ++Q EN++KQAE++K E + + V
Sbjct: 408 KKWEESL---QNDEKQLSEQKLQIENERKQAEMYKLELESLKATVV 450
>04_02_0004 -
8430902-8431210,8431295-8431445,8431542-8431830,
8431873-8432083,8432184-8432380,8432454-8432555,
8432666-8433998
Length = 863
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 252 KKYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFED 419
K + FL + K ++S + QH ND + E VD+D+V T +F D
Sbjct: 476 KSREAFLSGNQPSKKVQSKYPFQHMNDSNEVGSENVELSSVDLDSVLTAT-NNFSD 530
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 297 MKSNHEIQHENDKKQAELFKAESQDVDI 380
+KSN I+H D ++EL+K E ++ DI
Sbjct: 440 LKSNLSIEHWEDILRSELWKLEQEETDI 467
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 318 QHENDKKQAELFKAESQDV--DIDAVNKVTAQDFEDAANEEYSKFKFGNLETDADKKGDK 491
+ E K AE + E DV D + +F DAA E + G D ++KGDK
Sbjct: 347 EEEEALKDAEEEEPEEVDVGFDFQPAQESEESEFSDAAEELADELSEGLEVRDEEEKGDK 406
>11_01_0650 -
5265106-5265305,5265972-5266049,5266391-5266544,
5266635-5266701,5266723-5266796,5266910-5267794
Length = 485
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 100 KMLVKTLMRMNITYYHRLL--IRSISSKPAWDILTGICIERLPVVTPPLTEMQ 252
K L++ R+N + H LL +R + + W+ + I+ LP+V+ LT +Q
Sbjct: 102 KELIEDAARLNFWFKHALLRKVRFLQLEN-WEFYDPVPIDELPLVSRHLTRLQ 153
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 590 EGETLRQTAERIVKEQIGSELQIKFISNAPCGFYKYKYPSEMNGKVGAKIFFYYANYKVA 769
+G + R+ + + I ++ S++ C YK+ S K I+ Y NY VA
Sbjct: 1348 QGNSRRKRLASVKSDPISDAFELLDPSSSKCKAYKFYLHSTEPHK-DVDIYKEYGNYSVA 1406
Query: 770 ILQSLK 787
QSL+
Sbjct: 1407 TRQSLE 1412
>04_03_0643 + 18328807-18331969,18332560-18332627
Length = 1076
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 297 MKSNHEIQHENDKKQAELFKAESQDVDI 380
+KSN ++H D ++EL+K E ++ DI
Sbjct: 440 LKSNLSVEHWEDILRSELWKLEQEETDI 467
>03_03_0190 +
15293589-15293606,15293790-15293863,15294009-15294138,
15294834-15295088,15295184-15295453
Length = 248
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = +3
Query: 255 KYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEE 434
K +E T++ E K +I + K+ + + QDV + TA A++
Sbjct: 102 KQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDPQDVRPNGARN-TANG-TGASHTP 159
Query: 435 YSKFKFGNLETDADKKGDKTSTERCYNDI 521
S F FG TD+ K K T + + D+
Sbjct: 160 VSSFSFGEANTDSVTKTAKKITGKKFTDL 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,551,489
Number of Sequences: 37544
Number of extensions: 346272
Number of successful extensions: 901
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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