Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021833
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51330| Best HMM Match : C1_3 (HMM E-Value=2.5)                      51   1e-06
SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)                 32   0.67 
SB_39000| Best HMM Match : TolA (HMM E-Value=0.55)                     32   0.67 
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        31   1.6  
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)                     30   2.1  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     30   2.7  
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_36408| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_43654| Best HMM Match : zf-AD (HMM E-Value=0.2)                     29   6.3  
SB_19989| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)                      29   6.3  
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_38704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          28   8.3  
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_51330| Best HMM Match : C1_3 (HMM E-Value=2.5)
          Length = 506

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 29/69 (42%), Positives = 43/69 (62%)
 Frame = +2

Query: 488 QNINRTVLQRHLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKFI 667
           +++NR  LQ +LVL+ +R   ND+   +P G  Q+ E+LRQ AER +KE  G  +  +F+
Sbjct: 175 RSMNRK-LQHNLVLLLKR---NDTSWEMPIGQIQDKESLRQAAERSLKEMCGDGMDTRFL 230

Query: 668 SNAPCGFYK 694
           SNAP    K
Sbjct: 231 SNAPVAVLK 239



 Score = 32.7 bits (71), Expect = 0.39
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 166 ISSKPAWDILTGICIERLPVVTPPLTEMQKNIK 264
           I   P   I T IC+ERLPVVT   +E++K  +
Sbjct: 67  IQELPQPVIYTAICVERLPVVTADKSELEKRFE 99


>SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)
          Length = 783

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
 Frame = +3

Query: 222 SRNSAVN*NAKKYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVT 401
           S  S V  N  K K+FL    ++KSM +   ++  +          +S    +D VN   
Sbjct: 188 SSESTVKINTNKLKQFLAKRRWQKSMNAIKAVRRLSSMSSLLGMARKSIAPSLDTVNATE 247

Query: 402 AQDFEDAANEEYSKFKFGNLETDA---DKKGDKTSTERCY 512
           A + E   +++ ++   G  +  A    KK  +    RCY
Sbjct: 248 ADENETNPSDDCAEISDGATKNGAKTEKKKEAEKPVPRCY 287


>SB_39000| Best HMM Match : TolA (HMM E-Value=0.55)
          Length = 576

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +3

Query: 252 KKYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDID----AVNKVTAQDFED 419
           K+ KE  L   FE+  +   E +  ND  + +  +A+S+ ++++    A  KV  ++   
Sbjct: 312 KRLKEIGLAELFEEEQRKRDEAKKRNDWLEQQRLEADSKRLEMEMEALAKEKVKRKEVHA 371

Query: 420 AANEEYSKFKFGNLETDADK 479
              +E+S+F+    + DA+K
Sbjct: 372 KQVDEWSRFEEELKQRDAEK 391


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 252 KKYKEFLLTVEFE-KSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAAN 428
           K YK+ +  +EF+ KS KS + IQ E D + A    +E Q    + +     Q  E A  
Sbjct: 281 KSYKKKITELEFDLKSFKSKN-IQLEKDLENARNRPSEKQ---FEVIQVENVQAVESAPT 336

Query: 429 EEYSKFKFGNLE 464
           +++S F    LE
Sbjct: 337 DDFSAFDSEELE 348


>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
          Length = 825

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = +3

Query: 273 LTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDI--------DAVNKVTAQ--DFEDA 422
           LT E E   KS HE++HEN++   E    + ++  +        D VNK+ AQ  D  D 
Sbjct: 363 LTDEIEALRKSLHEVEHENEELSDENRALDEENAKLTEEKRTLEDTVNKLRAQINDTLDT 422

Query: 423 ANEEYSKFKFGNLETDA 473
             EE       N E ++
Sbjct: 423 TLEEIEHLHSFNEELES 439


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = +3

Query: 273 LTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDI--------DAVNKVTAQ--DFEDA 422
           LT E E   KS HE++HEN++   E    + ++  +        D VNK+ AQ  D  D 
Sbjct: 341 LTDEIEALRKSLHEVEHENEELSDENRALDEENAKLTEEKRTLEDTVNKLRAQINDTLDT 400

Query: 423 ANEEYSKFKFGNLETDA 473
             EE       N E ++
Sbjct: 401 TLEEIEHLHSFNEELES 417


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +3

Query: 252 KKYKEFLLTVEFE-KSMKSNHE-IQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAA 425
           +K KE   T E E K +K  H+ +Q E+ K +AEL K     +DI A   + A +  +  
Sbjct: 423 EKVKEQFTTTEQELKDLKKEHDALQSESKKDKAELAK-----LDIAAQEGLAAMEKVEEL 477

Query: 426 NEEYSKFKFGNLETDADKKGDKTSTERCYN 515
           N+E    +  N     +   ++   ++ YN
Sbjct: 478 NKEVIALREENKTLSDNFNSERILRKKYYN 507


>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1177

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 497  NRTVLQR-HLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIGSEL 652
            NRT  QR   V     + GN+ K    +  W E E L++T E+ ++  +G +L
Sbjct: 921  NRTSQQRPQSVNQVYHRQGNNVKATRRENDWDEIELLQKTQEKRLETGLGDDL 973


>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 282  EFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFKFGNL 461
            E ++  K   +I  E +K +    K+  +D ++   + V   + +DA  ++    KF   
Sbjct: 1756 ELDRDAKQESKIPEERNKNE---MKSAGEDHEMKESDVVKESNSQDAGIKKSENVKFNES 1812

Query: 462  ETDADKKGD 488
            E D  K+G+
Sbjct: 1813 EADEVKEGE 1821


>SB_36408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 844 HYYISVVTFHRVLYVLTNSL*TL*DCHFVVGIVEKN 737
           HYY  V TFHRVL VL  +L      + V+ + E+N
Sbjct: 398 HYYKIVKTFHRVLLVLRPTLPVTSCENCVLALEERN 433


>SB_43654| Best HMM Match : zf-AD (HMM E-Value=0.2)
          Length = 284

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 844 HYYISVVTFHRVLYVLTNSL*TL*DCHFVVGIVEKN 737
           HYY  V TFHRVL VL  +L      + V+ + E+N
Sbjct: 25  HYYKIVKTFHRVLLVLRPTLPVTSCENCVLALEERN 60


>SB_19989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 252 KKYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFK 356
           K+ +E + T+E  K  KS HEI+H N K Q   F+
Sbjct: 5   KQVQEKIATLEI-KWNKSRHEIRHPNHKVQTPSFR 38


>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
          Length = 584

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +3

Query: 273 LTVEFEKSMKSNHEIQHENDK-----KQAELFKAESQDVDIDAVNKVTAQDFEDAANEEY 437
           L + F   +    +IQ +++K     K+ E FK + +++ I  V+ V A +  D    ++
Sbjct: 297 LPINFVSQLGLGMDIQGDDEKAIASKKENESFKKQLKELLIALVDHVDANETSDKMASDF 356

Query: 438 SKFKFGNLETDADKKGDKTSTERCYNDI*FL 530
              +    ET+ D+K  K+      +++ FL
Sbjct: 357 MASRLPPFETEKDEKA-KSEKPTADSEVKFL 386


>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 249 AKKYKEFLLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDA-A 425
           AK+Y++ LL    E+ +K   E++ EN+KK+ E    E  + +I++  K    +  D  A
Sbjct: 376 AKEYEQELL---MEEEIKRQEELKEENEKKENETSTKEEHE-NINSEKKSDLGNIIDTQA 431

Query: 426 NEE 434
           N E
Sbjct: 432 NSE 434


>SB_38704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 336 KQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFKFGNLETDADKKGDKTSTE---R 506
           + +ELF+ E  ++     N +T    +   +EE+ +F   +L T  +K  D + TE    
Sbjct: 75  RTSELFQNEGIEIQDSWQNNITDVTSQSEEHEEWDEFYHNSLNT-TEKTTDDSETEGNNS 133

Query: 507 CYND 518
           C ND
Sbjct: 134 CDND 137


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = -3

Query: 294 FSQILRSIKILYIFLHFS*RRSYDW*PFNANTRQYIPSWLATNTSY*KPVVISYIHTHQC 115
           +  ILR++  L +FLHFS R+      F+++    +  WL +N +   P  ++  + HQ 
Sbjct: 692 YYDILRTLDRLSMFLHFS-RQRETVQVFHSS----LSVWLTSNETLGGPFYVNRSNGHQS 746

Query: 114 LNQHF 100
           L ++F
Sbjct: 747 LAEYF 751


>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 145 HRLLIRSISSKPAWDILTGICIERLPVVTPPLTEM 249
           H+L   S+     WD+ TG C++ LP  + P+T +
Sbjct: 74  HKLFDESVR---IWDVKTGKCLKTLPAHSDPVTAL 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,068,507
Number of Sequences: 59808
Number of extensions: 412818
Number of successful extensions: 1076
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)