Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021833
(845 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC017883-1|AAH17883.1| 279|Homo sapiens mitochondrial ribosomal... 85 4e-16
AF210056-1|AAG43507.1| 279|Homo sapiens C15orf4 protein. 85 4e-16
AF205435-1|AAG33698.1| 210|Homo sapiens P2ECSL protein. 85 4e-16
AK074053-1|BAB84879.1| 118|Homo sapiens FLJ00124 protein protein. 48 4e-05
AL662820-10|CAM25472.1| 504|Homo sapiens TAP binding protein (t... 30 9.2
AL662820-9|CAI18120.1| 448|Homo sapiens TAP binding protein (ta... 30 9.2
AL662820-8|CAM25471.1| 466|Homo sapiens TAP binding protein (ta... 30 9.2
AB010639-1|BAA28757.1| 448|Homo sapiens Tapasin*02 protein. 30 9.2
>BC017883-1|AAH17883.1| 279|Homo sapiens mitochondrial ribosomal
protein L46 protein.
Length = 279
Score = 84.6 bits (200), Expect = 4e-16
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +2
Query: 491 NINRTVLQRHLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKFIS 670
++NR L R+LVL+ + K G+ +LPQ WQ GETLR TAER + + ++ KF+
Sbjct: 148 SLNRK-LDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLG 206
Query: 671 NAPCGFYKYKYPSEM--NGKVGAKIFFYYA 754
NAPCG Y +K+P M +GAK+FF+ A
Sbjct: 207 NAPCGHYTFKFPQAMRTESNLGAKVFFFKA 236
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/79 (34%), Positives = 48/79 (60%)
Frame = +3
Query: 270 LLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFK 449
L +E E+S+ S+HE++ ++ ++ KA+ D + D + + AQD ED +++ +FK
Sbjct: 74 LQQIEIERSLYSDHELRALDENQRLAKKKADLHDEE-DEQDILLAQDLEDMWEQKFLQFK 132
Query: 450 FGNLETDADKKGDKTSTER 506
G T+AD+K D+TS R
Sbjct: 133 LGARITEADEKNDRTSLNR 151
Score = 32.3 bits (70), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 169 SSKPAWDILTGICIERLPVVTPPLTEMQKNI 261
S+ W +L +C++R PVV+ PLT +Q+ +
Sbjct: 40 SNGSPWRLLGALCLQRPPVVSKPLTPLQEEM 70
>AF210056-1|AAG43507.1| 279|Homo sapiens C15orf4 protein.
Length = 279
Score = 84.6 bits (200), Expect = 4e-16
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +2
Query: 491 NINRTVLQRHLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKFIS 670
++NR L R+LVL+ + K G+ +LPQ WQ GETLR TAER + + ++ KF+
Sbjct: 148 SLNRK-LDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLG 206
Query: 671 NAPCGFYKYKYPSEM--NGKVGAKIFFYYA 754
NAPCG Y +K+P M +GAK+FF+ A
Sbjct: 207 NAPCGHYTFKFPQAMRTESNLGAKVFFFKA 236
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/79 (34%), Positives = 48/79 (60%)
Frame = +3
Query: 270 LLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFK 449
L +E E+S+ S+HE++ ++ ++ KA+ D + D + + AQD ED +++ +FK
Sbjct: 74 LQQIEIERSLYSDHELRALDENQRLAKKKADLHDEE-DEQDILLAQDLEDMWEQKFLQFK 132
Query: 450 FGNLETDADKKGDKTSTER 506
G T+AD+K D+TS R
Sbjct: 133 LGARITEADEKNDRTSLNR 151
Score = 32.3 bits (70), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 169 SSKPAWDILTGICIERLPVVTPPLTEMQKNI 261
S+ W +L +C++R PVV+ PLT +Q+ +
Sbjct: 40 SNGSPWRLLGALCLQRPPVVSKPLTPLQEEM 70
>AF205435-1|AAG33698.1| 210|Homo sapiens P2ECSL protein.
Length = 210
Score = 84.6 bits (200), Expect = 4e-16
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +2
Query: 491 NINRTVLQRHLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAERIVKEQIGSELQIKFIS 670
++NR L R+LVL+ + K G+ +LPQ WQ GETLR TAER + + ++ KF+
Sbjct: 79 SLNRK-LDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSKNNMEAKFLG 137
Query: 671 NAPCGFYKYKYPSEM--NGKVGAKIFFYYA 754
NAPCG Y +K+P M +GAK+FF+ A
Sbjct: 138 NAPCGHYTFKFPQAMRTESNLGAKVFFFKA 167
Score = 52.4 bits (120), Expect = 2e-06
Identities = 27/79 (34%), Positives = 48/79 (60%)
Frame = +3
Query: 270 LLTVEFEKSMKSNHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFK 449
L +E E+S+ S+HE++ ++ ++ KA+ D + D + + AQD ED +++ +FK
Sbjct: 5 LQQIEIERSLYSDHELRALDENQRLAKKKADLHDEE-DEQDILLAQDLEDMWEQKFLQFK 63
Query: 450 FGNLETDADKKGDKTSTER 506
G T+AD+K D+TS R
Sbjct: 64 LGARITEADEKNDRTSLNR 82
>AK074053-1|BAB84879.1| 118|Homo sapiens FLJ00124 protein protein.
Length = 118
Score = 48.0 bits (109), Expect = 4e-05
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2
Query: 491 NINRTVLQRHLVLVTQRKLGNDSKTLLPQGHWQEGETLRQTAER 622
++NR L R+LVL+ + K G+ +LPQ WQ GETLR TAER
Sbjct: 63 SLNRK-LDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAER 105
Score = 42.7 bits (96), Expect = 0.002
Identities = 22/67 (32%), Positives = 40/67 (59%)
Frame = +3
Query: 306 NHEIQHENDKKQAELFKAESQDVDIDAVNKVTAQDFEDAANEEYSKFKFGNLETDADKKG 485
+HE++ ++ ++ KA+ D + D + + AQD ED +++ +FK G T+AD+K
Sbjct: 1 DHELRALDENQRLAKKKADLHDEE-DEQDILLAQDLEDMWEQKFLQFKLGARITEADEKN 59
Query: 486 DKTSTER 506
D+TS R
Sbjct: 60 DRTSLNR 66
>AL662820-10|CAM25472.1| 504|Homo sapiens TAP binding protein
(tapasin) protein.
Length = 504
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = -1
Query: 767 PLCSWHSRKKFWRQLFHSFHWDIYICRIHMEHLK-*ILSEVQIRFAP*LFFQQSDVVSRP 591
P W FW F Y+ IH+ +L+ + E+ + P + + +
Sbjct: 246 PWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAA 305
Query: 590 PANAPEEVMSL-NHF 549
P AP E++ L +HF
Sbjct: 306 PGEAPPELLCLVSHF 320
>AL662820-9|CAI18120.1| 448|Homo sapiens TAP binding protein
(tapasin) protein.
Length = 448
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = -1
Query: 767 PLCSWHSRKKFWRQLFHSFHWDIYICRIHMEHLK-*ILSEVQIRFAP*LFFQQSDVVSRP 591
P W FW F Y+ IH+ +L+ + E+ + P + + +
Sbjct: 246 PWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAA 305
Query: 590 PANAPEEVMSL-NHF 549
P AP E++ L +HF
Sbjct: 306 PGEAPPELLCLVSHF 320
>AL662820-8|CAM25471.1| 466|Homo sapiens TAP binding protein
(tapasin) protein.
Length = 466
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = -1
Query: 767 PLCSWHSRKKFWRQLFHSFHWDIYICRIHMEHLK-*ILSEVQIRFAP*LFFQQSDVVSRP 591
P W FW F Y+ IH+ +L+ + E+ + P + + +
Sbjct: 264 PWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAA 323
Query: 590 PANAPEEVMSL-NHF 549
P AP E++ L +HF
Sbjct: 324 PGEAPPELLCLVSHF 338
>AB010639-1|BAA28757.1| 448|Homo sapiens Tapasin*02 protein.
Length = 448
Score = 30.3 bits (65), Expect = 9.2
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = -1
Query: 767 PLCSWHSRKKFWRQLFHSFHWDIYICRIHMEHLK-*ILSEVQIRFAP*LFFQQSDVVSRP 591
P W FW F Y+ IH+ +L+ + E+ + P + + +
Sbjct: 246 PWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAA 305
Query: 590 PANAPEEVMSL-NHF 549
P AP E++ L +HF
Sbjct: 306 PGEAPPELLCLVSHF 320
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,253,966
Number of Sequences: 237096
Number of extensions: 2093107
Number of successful extensions: 4817
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4814
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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