Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021832
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    29   0.62 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    28   1.9  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    26   5.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   7.7  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.7  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   7.7  

>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 658 LHTSHVIRY-IASPIPRPAPRSWQLYSYETKHVW 756
           +H+ H+ +  IASPIPR   RS +L SY+  + W
Sbjct: 74  MHSKHISKLPIASPIPRGLDRSGEL-SYKDNNHW 106


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 307 VWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQM 468
           +++++ E  N+G +++  S ++  T  + +   EK +  IG     +SSKL  M
Sbjct: 171 LYQDLKELYNEGFRSISVSLMHSYTYPLHEEVVEKIAKRIGFTDISLSSKLTPM 224


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 110 MSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIAT 241
           ++G G++    T  ELA L P    +L  E+ + L   E++I T
Sbjct: 88  LTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVT 131


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 444 RVQQARSDAQLGVFPLHRRTRRSAYENVKGKVASRSNSTQSFDEALRDASGAT---SPPI 614
           R++  RS +    +P+   +    + N+K  V S+   T  FD+ALR  S  T   S P+
Sbjct: 586 RLRYVRSKSPTPYYPIE--SSEFGFTNLKD-VTSKDEITDGFDKALRSNSLRTHRDSRPV 642

Query: 615 -PEHKPLP*AGH*AVTPHVTCH 677
            P  K  P   H A+T   T H
Sbjct: 643 QPLLKQRP-QLHRALTESATLH 663


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 587 RQWRHLAPHPRAQAAALSGTLSCHSTRH 670
           R ++ + PHPR  A  L   +S   T H
Sbjct: 365 RDYKDIMPHPRPSAVLLDKPVSLDQTSH 392


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 570 DEALRDASGATSPPIPEH 623
           D A++DA GAT+P  P H
Sbjct: 394 DHAMKDACGATNPIQPTH 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,246
Number of Sequences: 5004
Number of extensions: 61642
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)