Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021832
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    31   1.1  
02_01_0286 + 1921049-1921726                                           29   3.5  
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773           29   4.6  
02_02_0403 - 9866122-9867231                                           29   4.6  
03_06_0318 + 33103467-33104232,33104332-33105548                       29   6.1  
01_06_1274 + 35905538-35905597,35905731-35905836,35906182-35906324     29   6.1  
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611...    28   8.1  
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    28   8.1  

>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 516 YENVKGKVASRSNSTQSFDEALRDASGATSPPIPEHKPLP 635
           YE VK     +++ T+S   A     G  SPP+P  +  P
Sbjct: 352 YEEVKDSPTEQTDKTKSSSNATASTEGRKSPPVPNERKDP 391


>02_01_0286 + 1921049-1921726
          Length = 225

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 402 RREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTRR 509
           RR+D    RRH G      R +   G FP+ RR RR
Sbjct: 90  RRDDRGSWRRHSGGNAIGLRQERASGGFPVKRRRRR 125


>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
          Length = 944

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 170 PEQADQLRAEWSRELARVEDEIATLR 247
           P ++DQL   W R +   +DE+A+L+
Sbjct: 61  PPESDQLARAWLRRVQEAQDEVASLK 86


>02_02_0403 - 9866122-9867231
          Length = 369

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 548 IELDSELRRGAA*RQWRHLAPH----PRAQAAALSGTLSCHSTRHMSFAI 685
           + L SE+ R AA    R+ AP     P A AAA++  L  H  RH+ F +
Sbjct: 52  VRLPSEVGRTAAALPLRYAAPQLLHRPDAAAAAVALKLRVHGRRHLVFYV 101


>03_06_0318 + 33103467-33104232,33104332-33105548
          Length = 660

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 244 ENCTQSKIRQSSDLKRKLGITVWKEITEDVN 336
           E+CT  ++++  +L RK    +WKE+ E+ N
Sbjct: 361 EHCTVDQLKKQIELDRKSISLLWKELEEERN 391


>01_06_1274 + 35905538-35905597,35905731-35905836,35906182-35906324
          Length = 102

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/62 (20%), Positives = 35/62 (56%)
 Frame = +1

Query: 232 NRDFENCTQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEK 411
           N + E C ++ + + +++K  +  TVWKE+ ++ ++     K+ Q  +  ES   +++++
Sbjct: 32  NMNKEECMET-LEKHANIKPVITSTVWKELEKENSEFFATYKKGQGEEPAESKSSSSSQE 90

Query: 412 TS 417
            +
Sbjct: 91  AA 92


>12_02_0709 -
           22359705-22360292,22360396-22360560,22360650-22361157,
           22361159-22361577,22362261-22362722,22362853-22364415
          Length = 1234

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 29/139 (20%), Positives = 59/139 (42%)
 Frame = +3

Query: 168 HPSRQTSYALNGVAS*PVSKMKSRL*ELYAKQDPSKLGLKT*TWHHGVERDHRGRQSGFE 347
           H +++ SY L  +     + +   L E++    P K G K        E+   G ++  +
Sbjct: 500 HRTKEASY-LKKLMEAMQNVLPKILNEIFISLSPPKQGEKQ---AEKAEKGTDGTKTDPD 555

Query: 348 KRQRKPSIPKN*ICDKNDRREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTRRSAYENV 527
             +   ++      D ND++ED+   ++   R++  A     + +F    R  +   + +
Sbjct: 556 IEEGAGAVASKDNVDVNDQKEDIGKKKKDRTRKLHAALLSLSVAIFEKRIRDGKD-LDTL 614

Query: 528 KGKVASRSNSTQSFDEALR 584
            G++A R +S  SF   LR
Sbjct: 615 AGEIA-RGDSASSFVGKLR 632


>01_07_0016 -
           40476014-40476333,40476598-40476740,40476945-40479099,
           40479205-40480047,40480176-40480269,40480356-40481207,
           40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 24/95 (25%), Positives = 44/95 (46%)
 Frame = +3

Query: 327 GRQSGFEKRQRKPSIPKN*ICDKNDRREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTR 506
           G  S  +  +++  +P+    DK +RR +VFD      R +++ R  +  G        R
Sbjct: 65  GHGSLLDPSEKEVRMPEG-AADKKERRRNVFDADSSL-RWLEEERETSLPG--------R 114

Query: 507 RSAYENVKGKVASRSNSTQSFDEALRDASGATSPP 611
           R   + V   + SR N  +S + ++RD   + +PP
Sbjct: 115 RERKKEVDRDMESRKNDRRSDNVSVRDGGDSRAPP 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,856,575
Number of Sequences: 37544
Number of extensions: 426788
Number of successful extensions: 1482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)