Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021832
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   59   5e-09
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   31   1.2  
SB_53944| Best HMM Match : G5 (HMM E-Value=1.5)                        31   1.2  
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  30   2.0  
SB_56058| Best HMM Match : Phasin (HMM E-Value=2.7)                    30   2.7  
SB_27018| Best HMM Match : DUF1279 (HMM E-Value=1.3)                   29   3.6  
SB_30509| Best HMM Match : TSP_1 (HMM E-Value=0.00019)                 28   8.2  
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)           28   8.2  

>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
 Frame = +1

Query: 262 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK-------TESVIKTTAEKTSS 420
           K  Q +DLKR+LGIT W +I E +      V++S+ Y K       T+ V+   +EKT S
Sbjct: 90  KENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQGASATKVVLVDASEKTVS 149

Query: 421 IIGGITAGVSSKLGQMRNSESFRSIE 498
            +   ++  + KLG++R S SF+S E
Sbjct: 150 AVKTASSATAKKLGEIRQSNSFQSFE 175


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 501 TRRSAYENVKGKVASRS-NSTQSFDEALRDASGATSPPIPEHK 626
           +++S+++  K K  SR  NST+   E   D S A+  P PE K
Sbjct: 19  SKKSSHKPKKSKKKSRQGNSTEKLKEQYEDISSASEEPEPERK 61


>SB_53944| Best HMM Match : G5 (HMM E-Value=1.5)
          Length = 294

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 379 TESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVVRLMKTSRVK*LL 546
           T+S  +TTAE +      IT G +++LG     E +  + E ++R     RVK L+
Sbjct: 52  TQSATQTTAETSF-----ITEGAATRLGLQSLREKYPDLNENLIRFQSDQRVKTLI 102


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +3

Query: 420 DHRRHHGRRVQQARSDAQLGVFPLHRRTRRSAYENVKGKVASRSNSTQSFDEALRDASGA 599
           D   ++ R    A S   L VF  H  +R+ ++ ++   +  R  S +     +   S  
Sbjct: 362 DVSSYNSRLDLDALSAVDLSVFGTHPPSRQGSFLSLHSSILRRPGSLRRPGSMISRQSSF 421

Query: 600 TSPPIPEHKPL 632
              P PEH PL
Sbjct: 422 QETPSPEHAPL 432


>SB_56058| Best HMM Match : Phasin (HMM E-Value=2.7)
          Length = 314

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 238 DFENCTQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTS 417
           DF  C    ++++ ++K ++  T++KE +    Q L +   S++  K  S++K     T 
Sbjct: 30  DFNKCATKMLKKAEEVKAEVFNTIYKEYSYAGFQDLSS-STSELNWKVSSLLKEIDATTK 88

Query: 418 SIIGGI 435
            + G I
Sbjct: 89  KVKGSI 94


>SB_27018| Best HMM Match : DUF1279 (HMM E-Value=1.3)
          Length = 334

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 400 TAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVVRLMKTSRVK*LL 546
           TA   S+    IT GV+++LG     E +  + E +VRL    R K L+
Sbjct: 63  TAGTASAETSFITEGVATRLGLQSLREEYPDLNENLVRLQSDRRGKTLI 111


>SB_30509| Best HMM Match : TSP_1 (HMM E-Value=0.00019)
          Length = 448

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 765 DFRPNVFRFV*VELPASRGRARYGRGDIANDM 670
           D + N  RFV  E P SRG   YG+ D+ N +
Sbjct: 395 DVKVNNARFVFREEPGSRGVLAYGQQDLVNSV 426


>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
          Length = 431

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 303 HGVERDHRGRQSGFEKRQRKPSIPKN*ICDKND 401
           HG     RG Q+  +KR   P +PK+ +  K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,823,528
Number of Sequences: 59808
Number of extensions: 466377
Number of successful extensions: 1462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)