Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021832
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical pr...    55   6e-08
Z73972-3|CAA98259.1|  305|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   3.1  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    28   9.5  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    28   9.5  
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical
           protein F13E6.1 protein.
          Length = 195

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 28/89 (31%), Positives = 50/89 (56%)
 Frame = +1

Query: 268 RQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGV 447
           + +++LKRKLG+T + E+++D+N+ LK V ++  YQKT  V   T++            V
Sbjct: 87  KHAAELKRKLGLTPFSELSQDINRSLKTVTDTDAYQKTAEVAAATSDT-----------V 135

Query: 448 SSKLGQMRNSESFRSIEERVVRLMKTSRV 534
             K   MRNS  F+S E ++   +  +++
Sbjct: 136 KEKWNDMRNSSLFKSFESKLGSALNNAKM 164


>Z73972-3|CAA98259.1|  305|Caenorhabditis elegans Hypothetical
           protein F15H10.6 protein.
          Length = 305

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 361 SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVVRLMKTS 528
           ++  +K E V KT  EKT S+IG     +   +G++R    +  +EE + + ++TS
Sbjct: 126 AKAMEKLEHV-KTPMEKTKSLIGKFFNEMWKDVGKLREEVKYDHLEELLEQTLRTS 180


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
            protein D1007.7 protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 396  NDRREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTRRS-AYENVKGKVASRSNSTQSFD 572
            +DRR+D  D RR   RR  ++            RRTRRS +YE  +  V   S   ++  
Sbjct: 883  DDRRDDRRDDRRESRRRSPRSPRSPD-------RRTRRSPSYEREEPPVKKTSVEEETVS 935

Query: 573  EALRDASGATSPPIPEHKPLP 635
                D    +  P P   P+P
Sbjct: 936  STTLDELKPSVEPTPVPAPIP 956


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
            R107.8 protein.
          Length = 1429

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 486  PLHRRTRRSAYENVKGKVASRSNSTQSFDEALRDASGATSPPIPEH 623
            P  + TR    +  + K  S SNS  S       + G+TS P P+H
Sbjct: 1316 PSRKVTRAPKKQTSRSKKESASNSRDSTHLTPPPSDGSTSTPSPQH 1361


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
            homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 486  PLHRRTRRSAYENVKGKVASRSNSTQSFDEALRDASGATSPPIPEH 623
            P  + TR    +  + K  S SNS  S       + G+TS P P+H
Sbjct: 1316 PSRKVTRAPKKQTSRSKKESASNSRDSTHLTPPPSDGSTSTPSPQH 1361


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 268 RQSSDLKRKLGITVWKEITEDVNQGLKNVKES 363
           ++ S LK KLGIT W ++ + + +  K +K S
Sbjct: 204 KEYSRLKMKLGITSWMKLKDPIEELKKIIKTS 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,562,897
Number of Sequences: 27780
Number of extensions: 345797
Number of successful extensions: 1166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)