Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021832
         (842 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59453.1 68414.m06679 transcription factor-related weak simil...    31   0.96 
At1g18620.1 68414.m02321 expressed protein                             30   2.2  
At4g26050.1 68417.m03750 leucine-rich repeat family protein cont...    29   3.9  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    29   3.9  
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    29   3.9  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   3.9  
At4g10270.1 68417.m01688 wound-responsive family protein similar...    29   5.1  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    28   6.8  

>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 313  KEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFR 489
            K  ++D N+ ++N   S   +K  S++KT  E   SII      ++S      NSESF+
Sbjct: 907  KSNSKDKNKAVENSPSSSKKRKRASLVKTKGEGVKSIIVDGQKVLNSDAIDASNSESFQ 965


>At1g18620.1 68414.m02321 expressed protein
          Length = 978

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +2

Query: 566 LRRGAA*RQWRHLAPHPRAQAAALSGTLSCHSTRHMSFAISPLPYRARPREAGNSTHTKR 745
           LR  +  R  R     PR+     + + S    R   F + PL     P E      T+R
Sbjct: 314 LRENSLNRSLRFSPSSPRSLGKDPAASSSSPRWRSSEFVMKPLSSLRYPIEPAPWKQTER 373

Query: 746 NTFGLKSRYQAIKSKKKS 799
           N F  K   +++KS  +S
Sbjct: 374 NRFSQKQACRSVKSLSQS 391


>At4g26050.1 68417.m03750 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
          Length = 383

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 325 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA-GVSSKLGQMRNSE 480
           E V QGL+ +K+    + TES  KT  +K S  IG +   G+SS  G+    E
Sbjct: 286 EVVEQGLEALKQYMSEKMTESYKKTPTKKKSWGIGKLVKYGLSSSPGRSTGRE 338


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
           Membrane-associated protein Hem (Dhem-2)
           (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
           similarity to Nck-associated protein 1 (NAP 1)
           (p125Nap1) (Membrane-associated protein HEM-2)
           (Swiss-Prot:P55161) [Rattus norvegicus]
          Length = 1339

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 449 DTPAVMPPMIEDVFSAVVFITDSVFWY 369
           D P+++ P I+ VFSA+      V WY
Sbjct: 417 DQPSLLAPNIQMVFSALALAQSEVLWY 443


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = +1

Query: 241 FENCTQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSS 420
           F+     +I ++S++ RKLG+ +W+E TE ++      +++ +Y    S+   T+E+   
Sbjct: 258 FQILENREIDKNSEI-RKLGLNLWEEETESLDWLDTKAEKAVIYVNFGSLTVLTSEQILE 316

Query: 421 IIGGI 435
              G+
Sbjct: 317 FAWGL 321


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 42  HSFHTVRVFHCKI*AVFKQLKKQCQ 116
           H   TV VF+C I  V K+LKKQ Q
Sbjct: 885 HPNSTVGVFYCGIQTVAKELKKQAQ 909


>At4g10270.1 68417.m01688 wound-responsive family protein similar to
           wound induced protein (GI:19320) [Lycopersicon
           esculentum]
          Length = 90

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 283 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSS 420
           LK +LG+  W  I   VNQ L+N   S    K  S    +A  TSS
Sbjct: 20  LKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS 65


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 309 VERDHRGRQS--GFEKRQRKPSIPKN*ICDKNDRRE-DVFDHRRHHGRRVQQARSDAQLG 479
           +ER HR R+     E   R+    +    DK  RRE D  DHR H   + ++   D + G
Sbjct: 437 LERKHRERKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERRRERDDRHG 496

Query: 480 VFPLHRRTRR 509
               H R  R
Sbjct: 497 REARHERRDR 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,262
Number of Sequences: 28952
Number of extensions: 328617
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)