Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021831
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    30   0.018
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    30   0.018
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   3.6  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = -2

Query: 273 THDRRCLAIKTSSYLCQLLFIFFVSLNIYQGQRYDGFE-----VWIMFRSFWISTFALTV 109
           THD    +      L Q +F+ FVS NIY  Q    FE     + +M + +++    + +
Sbjct: 170 THDEPRKSSLVQLILTQAIFLMFVSYNIYVCQTVSNFEYFQRKILLMIQLYYLYFDVIVI 229

Query: 108 STH-AFFTWRRHSVNLQVCST 49
           ST    F      +N Q   T
Sbjct: 230 STFLQLFLEHYEVINRQTLDT 250


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = -2

Query: 273 THDRRCLAIKTSSYLCQLLFIFFVSLNIYQGQRYDGFE-----VWIMFRSFWISTFALTV 109
           THD    +      L Q +F+ FVS NIY  Q    FE     + +M + +++    + +
Sbjct: 96  THDEPRKSSLVQLILTQAIFLMFVSYNIYVCQTVSNFEYFQRKILLMIQLYYLYFDVIVI 155

Query: 108 STH-AFFTWRRHSVNLQVCST 49
           ST    F      +N Q   T
Sbjct: 156 STFLQLFLEHYEVINRQTLDT 176


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 252 AIKTSSYLCQLLFIFFV 202
           ++ +SSY C++LF F +
Sbjct: 231 SVSSSSYNCEVLFSFLI 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,110
Number of Sequences: 336
Number of extensions: 3372
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)