Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021831
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...   102   7e-23
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   2.3  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    27   2.3  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   2.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.3  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    27   2.3  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    27   4.0  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    27   4.0  
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    26   6.9  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    26   6.9  
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    26   6.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   9.2  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.2  

>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score =  102 bits (244), Expect = 7e-23
 Identities = 44/95 (46%), Positives = 65/95 (68%)
 Frame = +3

Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVF 449
           EWKERGTGD +LL+HK     R+VMRRDKTLKVCANH + P++++  + GSDR++ W+V 
Sbjct: 112 EWKERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVA 171

Query: 450 ADYADETCKQELLAIKFGNPRMPNYGRQSLQKLRK 554
           AD ++     E  AI+F N    N  +++ +K ++
Sbjct: 172 ADVSEGEPTAETFAIRFANSENANLFKENFEKYQE 206



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +1

Query: 130 DPEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRARLYR 252
           D E    + HFEPIV L  V+ +T+EE+E    K+RA+L+R
Sbjct: 65  DAEPASPEVHFEPIVKLSAVETKTNEEEETVEFKMRAKLFR 105


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 355 LSLLITTRTVLFSL*RRSLTSPVPLSFHS 269
           LSL    RT+LFSL    L  P P  FHS
Sbjct: 121 LSLFAFCRTILFSLLTSFLLVPPPQFFHS 149


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 587 DQSSDDESSITRSEDTDTPEPKSTEKS 667
           D SSD ES+ + SE TD  E K+ EKS
Sbjct: 190 DSSSDSESNTSFSE-TDVEEEKAEEKS 215


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 162 EVWIMFRSFWISTFALTVSTHAFFTWRRHSVNLQVCS 52
           EV+  +R F ISTF L    +  FT  R ++   VC+
Sbjct: 88  EVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCA 124


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 428 SIGSTMYIHSNIWGNEMISAYFQSLISPH--YNPHSVVQFVTKKFNVTCT 285
           +I S++ ++S  +    +SA  +   +P   YNPH V   +T+ ++ TC+
Sbjct: 334 TISSSVQVNSLAFITSSLSAITKEPEAPETEYNPHGVFTLLTECYSSTCS 383


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
 Frame = -2

Query: 222  LLFIFFVSLNIYQGQR------YDGFEVWIMFRS-FWISTFALTVSTHAF----FTW 85
            LLF  F   +IY G R      +    VWI     FWIST A+ +S   F    F+W
Sbjct: 1476 LLFSRFAGPSIYLGSRTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSW 1532


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 566 KCSLYCQDQSSDDESSITRSEDT-DTPEPKSTEKSS 670
           K S +  ++SS+DESS++  ED   + EP+ + +S+
Sbjct: 3   KSSEFVNEESSEDESSVSSIEDQHSSKEPEQSVESN 38


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 190 DIQTHEEDEEELAKIRARLY 249
           +I T EE+EE +  +RARLY
Sbjct: 267 EIITGEEEEESIFSVRARLY 286



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 273 WKERGTG--DVKLLRHKLNNTVRVVMRRDKTLKVCAN 377
           WKERG G   V + + + + + R++MR D   +V  N
Sbjct: 295 WKERGQGILKVNVPKQRGSGSGRLLMRNDAVHRVIMN 331


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 398 NIWGNEMISAYFQSLISPHYNPHSVVQF 315
           N W N  + AYF +   P Y P  + QF
Sbjct: 298 NWWANSGLKAYFDAHGIPAYQPSPIDQF 325


>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 331 TVLFSL*RRSLTSPVPLSFHS*SPVSSDKDELVSLPAPLHL 209
           T+L  L   SL SP+P+   S SP    K  L ++P   H+
Sbjct: 9   TILKGLNGLSLRSPIPIWHVSASPEVGSKYNLPTVPTTSHV 49


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 426 RAFNWSVFAD--YADETCKQELLAIKF 500
           R+F+WSVF D   AD T ++E L+ +F
Sbjct: 206 RSFSWSVFDDKLLADPTDEEEDLSTEF 232


>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 500 WKPQNAELWKAKFAEAQEIVRTKCS 574
           WK Q++E W   F  A EIV   C+
Sbjct: 81  WKSQSSEAWGRNFFIAVEIVGIFCA 105


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 306 LRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVFADYAD--ETCKQ 479
           LR    + +  ++R    + +C+   +   + +  HCG+  + N+   A+ AD  + C Q
Sbjct: 690 LRESSKDVISSLLRSKMEVSICSGDSLFTSVFVAKHCGALDSCNFIYTAELADSGDDCPQ 749


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/70 (20%), Positives = 29/70 (41%)
 Frame = -3

Query: 587 PDNKDYILSSLFPELLQTLPSIVRHSGVSKLNSQQFLFACLISIISKYRPVECSIGSTMY 408
           PD +  + S+ FP  ++ L   V    V      + + A  +  I + RP E      + 
Sbjct: 598 PDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLE 657

Query: 407 IHSNIWGNEM 378
           +   ++ N++
Sbjct: 658 LLGELYNNQL 667


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 246 KTSSYLCQLLFIFFVSLNIYQGQRYDGFEVWIMFRSFWISTFALTVSTHAF 94
           KT   L   LFI F +  +     ++GF   ++F  F+++   L VS   F
Sbjct: 29  KTQWLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLVSFMGF 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,090
Number of Sequences: 5004
Number of extensions: 57948
Number of successful extensions: 234
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)