Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021831
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 98 8e-21
03_02_0648 - 10157911-10158104,10159621-10159789,10159897-101599... 65 5e-11
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 31 0.77
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 31 1.3
03_05_0425 - 24116049-24116175,24117055-24117377 29 4.1
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 28 7.2
04_01_0503 + 6594896-6595804 28 7.2
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 28 9.5
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 97.9 bits (233), Expect = 8e-21
Identities = 43/80 (53%), Positives = 58/80 (72%)
Frame = +3
Query: 267 HEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSV 446
++WKERGTG VKLL+HK N VR+VMR+ KTLK+CANH + +M H GSD++ W
Sbjct: 383 NQWKERGTGTVKLLKHKENGKVRLVMRQAKTLKICANHLVASTTKMQEHAGSDKSCVWHA 442
Query: 447 FADYADETCKQELLAIKFGN 506
AD+AD K+E+ AI+FG+
Sbjct: 443 -ADFADGELKEEMFAIRFGS 461
>03_02_0648 -
10157911-10158104,10159621-10159789,10159897-10159993,
10160089-10160246
Length = 205
Score = 65.3 bits (152), Expect = 5e-11
Identities = 37/101 (36%), Positives = 58/101 (57%)
Frame = +3
Query: 267 HEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSV 446
++WKERGTG VKLL+HK + V R D + VCA + +M H GSD++ W
Sbjct: 65 NQWKERGTGTVKLLKHKETGKMDGV-RLDWVMFVCA---VATTTKMQEHAGSDKSCVWHA 120
Query: 447 FADYADETCKQELLAIKFGNPRMPNYGRQSLQKLRK**GQN 569
D+AD K+E+ AI+FG+ R+ ++++ + G+N
Sbjct: 121 L-DFADGELKEEMFAIRFGSVENCKKFREMVEEIAEQQGKN 160
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 166 PIVSLPLVDIQTHEEDEEELAKIRARLYR 252
PIV L V + T EEDEE L ++++LYR
Sbjct: 31 PIVKLEEVAVTTGEEDEEVLLDMKSKLYR 59
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 31.5 bits (68), Expect = 0.77
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 706 VCLIIFVRFFIY*RLFSTLWFRCVSILTSSYTAF 605
+ ++ FF+Y LFS++WF+ +L+ +Y F
Sbjct: 356 IAIVSSTGFFLYLSLFSSVWFKVYVLLSCAYLTF 389
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 255 LAIKTSSYLCQLLFIFFVSLNIYQGQRYDGFEVWIMFRSFWISTFALTVST 103
L + TS++LC ++FI F +N+Y + DG +W R S F L + T
Sbjct: 218 LFVATSTFLCIIVFI-FSWVNVYYERGDDGGSIWKALRKETYS-FVLIIYT 266
>03_05_0425 - 24116049-24116175,24117055-24117377
Length = 149
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 437 LVCIC*LC**DMQTRIAGY*VWKPQNAELWKAKFAEAQEIVRT-KCSLYCQDQSSDDESS 613
L+CIC L + R +G V + EL + + EA I R + SLY +S+D SS
Sbjct: 64 LLCICCLRATVVIERSSGDGVKGMETGELDRGRGGEADRIGRGGRFSLYFGPYASEDPSS 123
Query: 614 ITRSEDTDT 640
T +E +T
Sbjct: 124 ATGAEGMET 132
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 279 ERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITP 392
ER GD + +KLN TV + ++ LK+ TP
Sbjct: 295 ERLNGDAETFNNKLNITVEALAKKHSDLKIAIFDIYTP 332
>04_01_0503 + 6594896-6595804
Length = 302
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 330 VRVVMRRDKTLKVCANHFITPDIRMNVHCGSD-RAFNW--SVFADYAD 464
VR + R D T CA + + + +N HC S+ RA W F YAD
Sbjct: 96 VRGMCRGDSTPDDCATYLRSAVLDINGHCNSNRRAAIWYDKCFLSYAD 143
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 587 DQSSDDESSITRSEDTDTPEPKSTEKSSIN 676
D S+DDE S S D D + + +K S+N
Sbjct: 280 DHSTDDEDSSDESHDADEKDEIAHQKDSLN 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,166
Number of Sequences: 37544
Number of extensions: 350182
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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