Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021831
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_22398| Best HMM Match : Ran_BP1 (HMM E-Value=4.6e-10) 62 4e-10
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.8
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 30 1.8
SB_46498| Best HMM Match : Ran_BP1 (HMM E-Value=5.8e-06) 29 3.2
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059) 29 3.2
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 3.2
SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 28 9.7
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026) 28 9.7
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 97.5 bits (232), Expect = 1e-20
Identities = 41/92 (44%), Positives = 61/92 (66%)
Frame = +3
Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVF 449
+WKERG GD+KLL + VRV+MRRD+ LK+CANH +TPD+ + + GSD++ WS
Sbjct: 1980 QWKERGIGDIKLLSNPQTGRVRVLMRRDQVLKICANHLLTPDMTIKPNAGSDKSLVWSTV 2039
Query: 450 ADYADETCKQELLAIKFGNPRMPNYGRQSLQK 545
ADYA+E K E A++F + R++ ++
Sbjct: 2040 ADYAEEESKPEQFAVRFKHAETATLFRKTFEE 2071
Score = 91.9 bits (218), Expect = 5e-19
Identities = 40/93 (43%), Positives = 61/93 (65%)
Frame = +3
Query: 273 WKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVFA 452
WKERG GD+KLLR + RV+MRRD+ K+CANH+I PD+ + + GSDR++ W+ A
Sbjct: 1347 WKERGVGDIKLLRDLKSGKGRVIMRRDQIYKLCANHWIKPDMELKSNMGSDRSWVWNTLA 1406
Query: 453 DYADETCKQELLAIKFGNPRMPNYGRQSLQKLR 551
D+++E E LAI+F P +++ +L+
Sbjct: 1407 DFSEEEPSAEQLAIRFKLPETATKFKEAFDELK 1439
Score = 89.0 bits (211), Expect = 4e-18
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +3
Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVF 449
+WKERG GDVK+L++ RV+MRR+ LK+CANH ITP + + G DRA+ W V
Sbjct: 1685 QWKERGLGDVKILKNPRTLKCRVLMRRENVLKICANHQITPVMHLEPMRGCDRAWVWHVL 1744
Query: 450 ADYADETCKQELLAIKF 500
AD++DE K+EL AI+F
Sbjct: 1745 ADFSDEEQKKELFAIRF 1761
Score = 86.6 bits (205), Expect = 2e-17
Identities = 38/96 (39%), Positives = 64/96 (66%)
Frame = +3
Query: 267 HEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSV 446
++WKERG GD+K+L++ + R++MRRD+ K+CANH IT +I++ SDRA+ W+
Sbjct: 2866 NQWKERGVGDIKILKNATDQKCRILMRRDQIRKLCANHNITSEIKLLPMSTSDRAWVWTS 2925
Query: 447 FADYADETCKQELLAIKFGNPRMPNYGRQSLQKLRK 554
AD ++E K E LA+KF +P + + + +K ++
Sbjct: 2926 LADLSEEEPKVEQLAVKFKSPSVAHQFKDVFEKAQQ 2961
Score = 80.2 bits (189), Expect = 2e-15
Identities = 34/78 (43%), Positives = 50/78 (64%)
Frame = +3
Query: 273 WKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVFA 452
WK+RG GD+K+L++ + R+VMRR+ K+CANH I + + GSDRA+ W A
Sbjct: 3189 WKDRGIGDIKILQNVSSGKARIVMRREHIHKLCANHLINASMELTPLAGSDRAWVWQTLA 3248
Query: 453 DYADETCKQELLAIKFGN 506
D ++E K E LA++F N
Sbjct: 3249 DISEEEAKPEELAVRFKN 3266
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = +1
Query: 127 GDPEATE--HDPHFEPIVSLP-LVDIQTHEEDEEELAKIRARLYR 252
G PE+ + +PHFEPI+ LP ++++T EE E+ L RA+LYR
Sbjct: 1929 GSPESGQDIEEPHFEPIIPLPEKIEVKTGEEHEKALFSHRAKLYR 1973
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +1
Query: 133 PEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRARLYR 252
PE F P+VSLP V++ T EE+EE L RA+LYR
Sbjct: 2821 PETEADGIDFAPLVSLPKVEVVTGEENEEALFSHRAKLYR 2860
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +1
Query: 136 EATEHDPHFEPIVSLP-LVDIQTHEEDEEELAKIRARLYR 252
E + PHFEP+++LP ++++T EE+E + RA+LYR
Sbjct: 1639 ECEDDGPHFEPVIALPKKIEVRTGEEEEVIVYSHRAKLYR 1678
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 372 ANHFITPDIRMNV--HCGSDRAFNWSVFADYADETCKQELLAIKFGNP 509
ANH IT ++ + G+ R++ W+ AD+ADET K E A++F P
Sbjct: 568 ANHVITAEMELKPMQQGGATRSWIWTTLADFADETPKVEQFAVRFKLP 615
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 DPEATEHDPHFEPIVSLP-LVDIQTHEEDEEELAKIRARLYR 252
D + + HFEP+VSLP V + T EE EE L RA+L+R
Sbjct: 511 DSASADDGIHFEPVVSLPSKVPVTTGEEKEEVLFNKRAKLFR 552
Score = 35.9 bits (79), Expect = 0.037
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 EHDPHFEPIVSLPL-VDIQTHEEDEEELAKIRARLYR 252
E D HF+P++ LP V + T EE+ E + RA+LYR
Sbjct: 1303 EADAHFKPVIPLPARVQVVTGEENHEVMFSGRAKLYR 1339
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +1
Query: 157 HFEPIVSLP-LVDIQTHEEDEEELAKIRARLYR 252
HFEPI+ LP V+ T EE ++E+ K RA+LYR
Sbjct: 3149 HFEPIIPLPDKVERVTGEEADQEVFKWRAKLYR 3181
>SB_22398| Best HMM Match : Ran_BP1 (HMM E-Value=4.6e-10)
Length = 139
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/42 (66%), Positives = 35/42 (83%), Gaps = 2/42 (4%)
Frame = +3
Query: 261 GDHE-WKERGTGDVKLLRHKLN-NTVRVVMRRDKTLKVCANH 380
GD WKERG G+V++L+HKL +T RV+MRRDKTLK+CANH
Sbjct: 12 GDENLWKERGVGNVRILKHKLKKHTYRVLMRRDKTLKICANH 53
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 148 HDPHFEPIVSLPLVDIQTHEEDEEE 222
H+PHFE + SL ++ E+DEEE
Sbjct: 2245 HEPHFELVPSLKKPRCESEEDDEEE 2269
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 148 HDPHFEPIVSLPLVDIQTHEEDEEE 222
H+PHFE + SL ++ E+DEEE
Sbjct: 202 HEPHFELVPSLKKPRCESEEDDEEE 226
>SB_46498| Best HMM Match : Ran_BP1 (HMM E-Value=5.8e-06)
Length = 478
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +3
Query: 267 HEWKERGTGDVKL--LRHKLNNTV---RVVMRRDKTLKVCANHFITPDIRMN 407
H WKE+G G ++L + ++ ++ R+VMR L+V N + P++ ++
Sbjct: 291 HTWKEKGRGTLRLNDMCQSMSESIFQSRLVMRTQGNLRVMLNTKLWPEMTLD 342
>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
Length = 399
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 626 HF*LYCFHHQMTDPDNKDYILSSLFPEL 543
HF +Y +H +T+ D KDY+ S + P+L
Sbjct: 353 HFDIY-YHRTITEEDVKDYVQSVVMPDL 379
>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 440
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 426 RAFNWSVFADYADETCKQELLAIKFGNPRMPNYGRQS 536
R+ +WS AD+ E +Q+ IK G+ R P+YGRQS
Sbjct: 163 RSNSWSS-ADHMREKLRQQ--RIKQGSNRSPSYGRQS 196
>SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 235 VSLPAPLHLLRESEYLPGAKIRWVRSVDHVP*LLDLHFRSH 113
V LP L ++++ LP K+ W + +HV LH + H
Sbjct: 662 VVLPEKLSRIKKASCLPSVKLGWNSNEEHVELPPPLHLKEH 702
>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 148 HDPHFEPIVSLPLVDIQTHEEDEEE 222
H+PHFE + L ++ E+DEEE
Sbjct: 1400 HEPHFELVPPLKKPRCESQEDDEEE 1424
>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 670
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 148 HDPHFEPIVSLPLVDIQTHEEDEEE 222
H+PHFE + L ++ E+DEEE
Sbjct: 620 HEPHFELVPPLKKPRCESEEDDEEE 644
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 11 NFNLFAIIYNKTQV-LHTCKFTECRLHVKKACVETV 115
+FN YNK++ LH+C+ ++C K CV +
Sbjct: 1625 SFNQALAQYNKSRASLHSCELSKCGYVCNKTCVPDI 1660
>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
Length = 766
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 584 QDQSSDD-ESSITRSEDTDTPEPKSTEKS 667
QD+ DD E+S ++ED P+PK T+ S
Sbjct: 423 QDKEDDDSENSSEQAEDKREPDPKKTKDS 451
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,133,004
Number of Sequences: 59808
Number of extensions: 417153
Number of successful extensions: 1281
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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