Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021831
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    44   9e-05
AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical...    28   6.5  

>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 31/79 (39%), Positives = 49/79 (62%)
 Frame = +3

Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVF 449
           EWKERGTG++K+L +K   + RVVMRRD+ LKVCAN  I   + +     +++A+ W   
Sbjct: 293 EWKERGTGELKVLYNKDKKSWRVVMRRDQVLKVCANFPILGSMTIQQMKSNEKAYTW-FC 351

Query: 450 ADYADETCKQELLAIKFGN 506
            D++++      L+ +F N
Sbjct: 352 EDFSEDQPAHVKLSARFAN 370



 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 21/46 (45%), Positives = 32/46 (69%)
 Frame = +3

Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMN 407
           E KERG GD+KLL+   +N  R+VMRR++  K+CAN  I   ++++
Sbjct: 764 ENKERGLGDIKLLKSN-DNKYRIVMRREQVHKLCANFRIEKSMKLS 808



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 127 GDPEATEHDPHFEPIVSLP-LVDIQTHEEDEEELAKIRARLYR 252
           GD E  E +  F+P++ LP LV+++T EEDEE +   R +LY+
Sbjct: 716 GDGEY-EPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYK 757


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 21/46 (45%), Positives = 32/46 (69%)
 Frame = +3

Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMN 407
           E KERG GD+KLL+   +N  R+VMRR++  K+CAN  I   ++++
Sbjct: 788 ENKERGLGDIKLLKSN-DNKYRIVMRREQVHKLCANFRIEKSMKLS 832



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +3

Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDK 356
           EWKERGTG++K+L +K   + RVVMRRD+
Sbjct: 293 EWKERGTGELKVLYNKDKKSWRVVMRRDQ 321



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 127 GDPEATEHDPHFEPIVSLP-LVDIQTHEEDEEELAKIRARLYR 252
           GD E  E +  F+P++ LP LV+++T EEDEE +   R +LY+
Sbjct: 740 GDGEY-EPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKLYK 781


>AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical
           protein K08D9.2 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 216 FIFFVSLNIYQGQRYDGFEVWIMFRSFWISTFALTVSTHAFFTWRRHSVNLQVC 55
           + +F   NI +   YD F++   +  F  + +   ++ H    W+ HS+  Q C
Sbjct: 215 YFYFTLFNINE---YD-FKILSYYAKFGYAEYTHYITQHKKLNWKAHSIQTQEC 264


>AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical
           protein R07C3.4 protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 288 TGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGS 422
           TGD+   +     T++++ RRD  LK+    F+ PD+  +++  S
Sbjct: 554 TGDIG--KFTPEGTLQLIDRRDNVLKLPQGEFVAPDLTESLYISS 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,264
Number of Sequences: 27780
Number of extensions: 329307
Number of successful extensions: 1208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)