Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021831
(778 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP... 83 2e-16
At1g07140.1 68414.m00760 Ran-binding protein 1a (RanBP1a) identi... 83 2e-16
At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly... 81 6e-16
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing... 32 0.37
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing... 32 0.37
At3g58960.1 68416.m06570 F-box family protein contains F-box dom... 30 1.5
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 29 4.5
At5g39560.1 68418.m04792 kelch repeat-containing F-box family pr... 28 6.0
At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 28 6.0
At5g28530.1 68418.m03478 far-red impaired responsive protein, pu... 28 7.9
>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
putative strong similarity to Ran binding proteins from
Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
contains Pfam profile PF00638: RanBP1 domain
Length = 219
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 267 HEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSV 446
++WKERG G VKLL+HK VR+VMR+ KTLK+CANH I+ + + H G++++ W
Sbjct: 63 NQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHA 122
Query: 447 FADYADETCKQELLAIKFGN 506
D++D K EL I+F +
Sbjct: 123 -TDFSDGELKDELFCIRFAS 141
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 166 PIVSLPLVDIQTHEEDEEELAKIRARLYR 252
PIV L V + T EEDE+ + +++++YR
Sbjct: 29 PIVRLEEVAVTTGEEDEDAVLDLKSKMYR 57
>At1g07140.1 68414.m00760 Ran-binding protein 1a (RanBP1a) identical
to Ran-binding protein (atranbp1a) GI:2058282 from
[Arabidopsis thaliana]
Length = 228
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/80 (43%), Positives = 52/80 (65%)
Frame = +3
Query: 267 HEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSV 446
++WKERG G VK L+HK +R+VMR+ KTLK+CANHF+ + + H G++++ W
Sbjct: 64 NQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHA 123
Query: 447 FADYADETCKQELLAIKFGN 506
D+AD K EL I+F +
Sbjct: 124 -RDFADGELKDELFCIRFAS 142
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 166 PIVSLPLVDIQTHEEDEEELAKIRARLYR 252
PIV L V + T EEDE+ + ++++LYR
Sbjct: 30 PIVRLEEVAVTTGEEDEDAVLDLKSKLYR 58
>At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly
identical to atranbp1b [Arabidopsis thaliana] GI:2058284
Length = 217
Score = 81.4 bits (192), Expect = 6e-16
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = +3
Query: 270 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVF 449
+WKERG G VK L+H+++ +R+VMR+ KTLK+CANH + + + H G+D++ W
Sbjct: 67 QWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHA- 125
Query: 450 ADYADETCKQELLAIKFGN 506
D++D K EL I+F +
Sbjct: 126 RDFSDGELKDELFCIRFAS 144
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 166 PIVSLPLVDIQTHEEDEEELAKIRARLYR 252
PIV L V + T EEDE+ + ++++LYR
Sbjct: 32 PIVRLEEVAVTTGEEDEDTILDLKSKLYR 60
>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein similar to
Ran binding protein [Homo sapiens] GI:624232; contains
Pfam profile PF00638: RanBP1 domain
Length = 465
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 273 WKERGTGDVKL-LRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVF 449
WKERG G++K+ + N R+VMR ++ N + P++++ + ++
Sbjct: 349 WKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKM--DKKGITFACV 406
Query: 450 ADYADETCKQELLAIKFGNP 509
+D LA+KF +P
Sbjct: 407 NSVSDAKDGLSTLALKFKDP 426
>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein weak
similarity to SP|Q09717 Ran-specific GTPase-activating
protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding
protein) {Schizosaccharomyces pombe}; contains Pfam
profile PF00638: RanBP1 domain
Length = 440
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 264 DHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRM 404
D WKERG G++K+ + R+VMR ++ N + P++++
Sbjct: 319 DGGWKERGKGELKVNVSSNDGKARLVMRAKGNYRLILNASLYPEMKL 365
>At3g58960.1 68416.m06570 F-box family protein contains F-box domain
Pfam:PF00646
Length = 475
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 145 EHDPHF-EPIVSLPLVDIQTHEEDEEELAKIRARL 246
+H HF E + L LV + +HE DEEE ++R L
Sbjct: 419 KHMKHFLEKLSCLELVKVFSHERDEEEHVQLRTNL 453
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 65 KFTECRLHVKKACVETVRAKVEIQKLRN 148
+FT+ + ++KAC + RA V ++KL N
Sbjct: 437 RFTDKEIELRKACSQNDRANVIVRKLEN 464
>At5g39560.1 68418.m04792 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif
Length = 395
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 262 PVSSD-KDELVSLPAPLHLLRESEYLPGAKIRWVRSVDHVP*LLDL 128
PV SD KD++ A + L + S+ KI W+ SV VP L DL
Sbjct: 341 PVQSDGKDKIEIWCAQIALEKRSKDEIWGKIEWINSVLTVPKLCDL 386
>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
helicase, putative nearly identical to HUA enhancer 2
[Arabidopsis thaliana] GI:16024936
Length = 995
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 599 DDESSITRSEDTDTPEPKSTEKS 667
+ ESS RS++T TPEP++ +S
Sbjct: 16 ESESSKLRSDETPTPEPRTKRRS 38
>At5g28530.1 68418.m03478 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 685
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 581 CQDQSSDDESSITRSEDTDTPEPKS 655
C + +DES+IT+SE TP P S
Sbjct: 23 CYIRLEEDESTITKSEIESTPTPTS 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,835
Number of Sequences: 28952
Number of extensions: 297647
Number of successful extensions: 924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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