Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021829
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    31   0.24 
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.0  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   9.1  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 417 HVNEVKLLFRCVVLWFSSFILKSDCSCNRECVYK 518
           H +  + + RC++L+FSS   KSDC   +  V K
Sbjct: 242 HCSSPRFVNRCIILYFSSSEDKSDCLAKKNYVNK 275


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 339 N*SGFLLKEASY--RVILYKKWCAYNLVHVNE 428
           N +G  LK+  Y  RV+L  +W +YN  H NE
Sbjct: 382 NENGVTLKKPHYFNRVLLGFEWNSYNQAHFNE 413


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 566 YNLKNIYDINVEDVASLIHTF 504
           Y+LK+I+DIN  D+A +  +F
Sbjct: 504 YSLKSIFDINKLDLAKVAKSF 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,394
Number of Sequences: 5004
Number of extensions: 62493
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)