Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021829
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0114 - 892599-893070,894115-894457,894896-895151                 30   2.4  

>06_01_0114 - 892599-893070,894115-894457,894896-895151
          Length = 356

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -3

Query: 484 DLRMNEENHNTTHRKRSFTSFTCTKLYAHHFLYNITRYDASLSKKPDQFPGRVEGVEGVR 305
           DL +    H++     SF +      Y HH   +++ Y A   KK D  P R    +G +
Sbjct: 52  DLLLPIRPHSSAAATYSFANPAAAPFYHHHHHPSLSYY-AYYGKKLDPEPWRCRRTDGKK 110

Query: 304 WQFS 293
           W+ S
Sbjct: 111 WRCS 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,192,689
Number of Sequences: 37544
Number of extensions: 363653
Number of successful extensions: 735
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)