Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021829
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18282| Best HMM Match : SEC-C (HMM E-Value=2.6)                     29   4.2  
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)           28   7.3  
SB_29813| Best HMM Match : Dynein_heavy (HMM E-Value=0)                28   7.3  
SB_10297| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_16057| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_18282| Best HMM Match : SEC-C (HMM E-Value=2.6)
          Length = 269

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -1

Query: 447 IEKEVSLHSRVPSCTRTIFCIISRDMMLP*AKSQISSPGGSRE*RECVGNFLS*PRIDVL 268
           + +E   H     C +T+ C+     +L    S+       RE  + V  +L  PRI   
Sbjct: 53  LPQETRQHLSTEECEKTLTCLTEGSWVLREGTSK-EDHKRRRELEQEVHEYLGFPRILHR 111

Query: 267 DDPKCGLNVS 238
           +D +CG NV+
Sbjct: 112 EDGRCGENVT 121


>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
          Length = 554

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 481 LRMNEENHNTTHRKRSFTSFTCTKLY 404
           L  +++ H  TH K+SFT   C K+Y
Sbjct: 429 LAKHQQFHCNTHHKKSFTCKHCDKIY 454


>SB_29813| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 659

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 365 FLKQKARSVPREGRGSRGSALAIFLVDHASMFLMTLNVV*MSLFKRDKVFYTLDLTVSGI 186
           F+    +S+    R    S    FL DH +  + + NV   SLF++DK+ ++  LT+  +
Sbjct: 210 FINLYLQSILNSERSPELSERIEFLNDHFTQSIYS-NVC-RSLFEKDKLLFSFILTIGIL 267

Query: 185 TGG 177
            GG
Sbjct: 268 KGG 270


>SB_10297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 487 SDLRMNEENH--NTTHRKRSFTSFTCTKLYA 401
           S+LR+ E+ H   + HRKR   + +C+K+ A
Sbjct: 49  SNLRVGEQKHMVQSVHRKRRARALSCSKIIA 79


>SB_16057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 424 FTCTKLYAHHFLYNITRYDASLSKKPDQFPGRVEGVE 314
           F    LY       I+R   SL ++P QFP +  GVE
Sbjct: 7   FFALLLYTVTLCTAISRIGRSLQRRPRQFPAKSHGVE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,831,873
Number of Sequences: 59808
Number of extensions: 450520
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)