Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021829
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13960.1 68416.m01762 expressed protein identical to transcri...    29   3.4  
At2g06200.1 68415.m00682 expressed protein                             29   4.5  
At1g74770.1 68414.m08663 expressed protein                             28   5.9  

>At3g13960.1 68416.m01762 expressed protein identical to
           transcription activator GRL5 [Arabidopsis thaliana]
           GI:21539888 (unpublished); supporting cDNA
           gi|21539887|gb|AY102638.1|
          Length = 397

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 442 KRSFTSFTCTKLYAHHFLYNITRYDASLSKKPDQFPGRVEGVEGVRWQFS 293
           +RS  +   ++L  H  L     Y     +KPD  PGR    +G +W+ S
Sbjct: 50  RRSLDTSLVSRLLPHQSL-GWGCYQMGFGRKPDPEPGRCRRTDGKKWRCS 98


>At2g06200.1 68415.m00682 expressed protein
          Length = 244

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 397 HFLYNITRYDASLSKKPDQFPGRVEGVEGVRWQFS 293
           HF +N+  Y+  + +K D  PGR    +G +W+ S
Sbjct: 65  HFGWNV--YEMGMGRKIDAEPGRCRRTDGKKWRCS 97


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 390 KKWCAYNLVHVNEVKLLFRCVVLWFSSFILKSD 488
           +K   Y  +HV  + LL +CV+LWFS+ + + +
Sbjct: 438 QKQLLYTSIHVLPLGLL-KCVILWFSAHLSEEE 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,215,605
Number of Sequences: 28952
Number of extensions: 312570
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)