Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    31   0.21 
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   4.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.9  

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 535 MVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDW--KPLSY 672
           +V +NN+K D S VLK T    K+ NE   R +    QE W  K LS+
Sbjct: 118 LVKSNNKKFDTSIVLKHTHLSSKSQNEKKARVKVFR-QEIWALKTLSH 164


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 47  KTILLGLVVTITCFCLSCKFLSN 115
           K + +G ++   CFC+SC    N
Sbjct: 147 KLVYIGSLIIYVCFCISCALARN 169


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 517 VNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQED-WKPLS 669
           +  L + +S NN  ++++ VLK  +    +  E +V S+     E+  KPLS
Sbjct: 403 IMRLGNKISENNELLNENRVLKEKLQTYLDKKESNVTSKIKSTAENSSKPLS 454


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 487  KIATGSVYMLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVR 627
            KI T  +Y +++ +  M+ TN+ K  + T      SFL ++ +   R
Sbjct: 2015 KIMTPELYKIIDLIRDMMVTNHTKSTRQTCRHLYYSFLLDYPQGKTR 2061


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,725
Number of Sequences: 5004
Number of extensions: 56417
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)