Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    29   4.7  
05_07_0282 + 28934359-28936458                                         28   8.1  
02_02_0109 + 6830802-6833412,6833491-6833861                           28   8.1  

>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +2

Query: 29  LERFCLKTILLGLVVTITCFCLSCKFLSNLQV*IFL-NKLFSLT*MHDNV*FGFNCVKLR 205
           L++  LK ++ G    I CFCLSC    N    IFL +KL SL     NV    N +K+ 
Sbjct: 322 LQKAVLKGVITGC--NIRCFCLSCNGSKN----IFLHHKLKSLEAFCVNVALSQNNIKIP 375

Query: 206 RSAQFVINDFSTINKYTE---RLC*IKKYSG 289
                ++        YT    + C ++K  G
Sbjct: 376 LPHLMLVRAIPGTPGYTNWSLKFCLMRKVDG 406


>05_07_0282 + 28934359-28936458
          Length = 699

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 589 ISFLKNHNEISVRSRAHDIQEDWKPLSYQMKSLH 690
           ++F     E+  R R HD    WKPL   ++ LH
Sbjct: 41  LAFRAVAGELRARLRFHDRLTKWKPLDDPLRELH 74


>02_02_0109 + 6830802-6833412,6833491-6833861
          Length = 993

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 685 NSSFDRKVVSNLLVCHVLEILLIFHYGFSG 596
           N+SF  K+ S+L  C++L  L++++  FSG
Sbjct: 395 NNSFSGKLPSSLDGCYLLNNLMMYNNNFSG 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,652
Number of Sequences: 37544
Number of extensions: 294080
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)