Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14)                   34   0.096
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/51 (43%), Positives = 37/51 (72%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL+S++S ++RK+DKSTVLK  I+ LK+  ++S  S +   +E W+P
Sbjct: 39  VLIGELASIISPSSRKVDKSTVLKKAIACLKSQKDLSPASCSKP-REGWQP 88


>SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14)
          Length = 468

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 13/38 (34%), Positives = 30/38 (78%), Gaps = 3/38 (7%)
 Frame = +1

Query: 517 VNELSSMV---STNNRKMDKSTVLKSTISFLKNHNEIS 621
           + EL++MV   +++ +K+DK+TVL+  ++++K HN+++
Sbjct: 157 ITELAAMVPMCASSRKKLDKTTVLQMAVNYMKIHNDLT 194


>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 514 LVNELSSMV---STNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQE 651
           +++ELS ++    T  +K+DK +VLK T+SF +  N +S + +     E
Sbjct: 141 VLDELSLLLPLDGTVKKKLDKLSVLKLTVSFFQTQNLVSGKRKTEPKDE 189


>SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 105 NLHDKQKHVIVTTKPNKIVFRQNRSSHQKRFR 10
           N H+ +   IVTTK NK  +R+   S+ K F+
Sbjct: 191 NFHEDKTGGIVTTKKNKPKYRKEEKSNIKGFK 222


>SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = +1

Query: 517 VNELSSMVSTNN---RKMDKSTVLKSTISFLKNHNEISVRSRAHDIQE-DWKP 663
           +NELS+M+   N   RK+DK TVL+  +  ++     ++R RA    E ++KP
Sbjct: 203 INELSTMIPMCNAMSRKLDKLTVLRMAVQHMR-----ALRGRAVPFTETNYKP 250


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -1

Query: 397 NYCLSSHYRLRSNTIPWARFKTKSHSPLLDNNYACISTVFFYSAQSFCIFVDSTEIVNNE 218
           +YCL      R+ T+P   ++   H+     N  CI   F +  QSF I V +T    N 
Sbjct: 370 SYCLVLS---RNITVPQTVWRV--HNSYFGGNERCIFASFLHQPQSFDISVRNTTFDKNN 424

Query: 217 LCTASKFYT 191
           +     ++T
Sbjct: 425 ISGIYMYFT 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,671,432
Number of Sequences: 59808
Number of extensions: 377119
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)