Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77970-1|AAB47250.1|  824|Homo sapiens neuronal PAS2 protein.          69   2e-11
U51625-1|AAC51211.1|  626|Homo sapiens MOP4 protein.                   69   2e-11
EF015903-1|ABM64214.1|  824|Homo sapiens neuronal PAS domain pro...    69   2e-11
BC072383-1|AAH72383.1|  824|Homo sapiens neuronal PAS domain pro...    69   2e-11
BC051351-1|AAH51351.2|  824|Homo sapiens neuronal PAS domain pro...    69   2e-11
BC028107-1|AAH28107.1|  622|Homo sapiens NPAS2 protein protein.        69   2e-11
AC016738-1|AAY14822.1|  813|Homo sapiens unknown protein.              69   2e-11
EF015897-1|ABM64208.1|  846|Homo sapiens CLOCK protein.                65   3e-10
BC126159-1|AAI26160.1|  846|Homo sapiens clock homolog (mouse) p...    65   3e-10
BC126157-1|AAI26158.1|  846|Homo sapiens clock homolog (mouse) p...    65   3e-10
BC041878-1|AAH41878.1|  846|Homo sapiens CLOCK protein protein.        65   3e-10
AK223549-1|BAD97269.1|  846|Homo sapiens clock variant protein.        65   3e-10
AF097458-1|AAF13733.1|  845|Homo sapiens clock protein.                65   3e-10
AF011568-1|AAB83969.1|  846|Homo sapiens CLOCK protein.                65   3e-10
AB005535-1|BAA21774.1|  349|Homo sapiens Clock protein.                65   3e-10
AB002332-1|BAA20792.2|  848|Homo sapiens KIAA0334 protein.             65   3e-10

>U77970-1|AAB47250.1|  824|Homo sapiens neuronal PAS2 protein.
          Length = 824

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ ELSSM+  N RKMDK+TVL+  I FL+ HNE+S ++   DIQ+DWKP
Sbjct: 27  VLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKP 77


>U51625-1|AAC51211.1|  626|Homo sapiens MOP4 protein.
          Length = 626

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ ELSSM+  N RKMDK+TVL+  I FL+ HNE+S ++   DIQ+DWKP
Sbjct: 27  VLIKELSSMLPGNTRKMDKTTVLEEVIGFLQKHNEVSAQTEICDIQQDWKP 77


>EF015903-1|ABM64214.1|  824|Homo sapiens neuronal PAS domain
           protein 2 protein.
          Length = 824

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ ELSSM+  N RKMDK+TVL+  I FL+ HNE+S ++   DIQ+DWKP
Sbjct: 27  VLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKP 77


>BC072383-1|AAH72383.1|  824|Homo sapiens neuronal PAS domain
           protein 2 protein.
          Length = 824

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ ELSSM+  N RKMDK+TVL+  I FL+ HNE+S ++   DIQ+DWKP
Sbjct: 27  VLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKP 77


>BC051351-1|AAH51351.2|  824|Homo sapiens neuronal PAS domain
           protein 2 protein.
          Length = 824

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ ELSSM+  N RKMDK+TVL+  I FL+ HNE+S ++   DIQ+DWKP
Sbjct: 27  VLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKP 77


>BC028107-1|AAH28107.1|  622|Homo sapiens NPAS2 protein protein.
          Length = 622

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ ELSSM+  N RKMDK+TVL+  I FL+ HNE+S ++   DIQ+DWKP
Sbjct: 27  VLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKP 77


>AC016738-1|AAY14822.1|  813|Homo sapiens unknown protein.
          Length = 813

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ ELSSM+  N RKMDK+TVL+  I FL+ HNE+S ++   DIQ+DWKP
Sbjct: 16  VLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKP 66


>EF015897-1|ABM64208.1|  846|Homo sapiens CLOCK protein.
          Length = 846

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>BC126159-1|AAI26160.1|  846|Homo sapiens clock homolog (mouse)
           protein.
          Length = 846

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>BC126157-1|AAI26158.1|  846|Homo sapiens clock homolog (mouse)
           protein.
          Length = 846

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>BC041878-1|AAH41878.1|  846|Homo sapiens CLOCK protein protein.
          Length = 846

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>AK223549-1|BAD97269.1|  846|Homo sapiens clock variant protein.
          Length = 846

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>AF097458-1|AAF13733.1|  845|Homo sapiens clock protein.
          Length = 845

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>AF011568-1|AAB83969.1|  846|Homo sapiens CLOCK protein.
          Length = 846

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>AB005535-1|BAA21774.1|  349|Homo sapiens Clock protein.
          Length = 349

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 52  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 102


>AB002332-1|BAA20792.2|  848|Homo sapiens KIAA0334 protein.
          Length = 848

 Score = 64.9 bits (151), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +1

Query: 511 MLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           +L+ EL SM+  N RKMDKSTVL+ +I FL+ H EI+ +S A +I++DWKP
Sbjct: 54  VLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAQSDASEIRQDWKP 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,306,649
Number of Sequences: 237096
Number of extensions: 1721701
Number of successful extensions: 3274
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3274
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)