Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.     81   1e-15
AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.     81   1e-15
AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD...    81   1e-15
AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC...    81   1e-15
AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB...    81   1e-15
AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA...    81   1e-15
AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein.     79   4e-15
AE014296-1324|AAX52755.1|   87|Drosophila melanogaster CG7391-PE...    60   4e-09
BT022668-1|AAY55084.1|  515|Drosophila melanogaster IP12246p pro...    29   8.0  
AY094943-1|AAM11296.1|  469|Drosophila melanogaster RH56938p pro...    29   8.0  
AE014296-3029|AAF49255.3|  473|Drosophila melanogaster CG18234-P...    29   8.0  

>AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.
          Length = 1023

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 46/50 (92%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           LVN+LS+++ST++RKMDKSTVLKSTI+FLKNHNE + RS+  +IQ+DWKP
Sbjct: 30  LVNDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKP 79


>AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.
          Length = 1015

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 46/50 (92%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           LVN+LS+++ST++RKMDKSTVLKSTI+FLKNHNE + RS+  +IQ+DWKP
Sbjct: 30  LVNDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKP 79


>AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD,
           isoform D protein.
          Length = 1027

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 46/50 (92%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           LVN+LS+++ST++RKMDKSTVLKSTI+FLKNHNE + RS+  +IQ+DWKP
Sbjct: 34  LVNDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKP 83


>AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC,
           isoform C protein.
          Length = 1027

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 46/50 (92%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           LVN+LS+++ST++RKMDKSTVLKSTI+FLKNHNE + RS+  +IQ+DWKP
Sbjct: 34  LVNDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKP 83


>AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB,
           isoform B protein.
          Length = 1023

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 46/50 (92%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           LVN+LS+++ST++RKMDKSTVLKSTI+FLKNHNE + RS+  +IQ+DWKP
Sbjct: 30  LVNDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKP 79


>AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA,
           isoform A protein.
          Length = 1023

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 46/50 (92%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           LVN+LS+++ST++RKMDKSTVLKSTI+FLKNHNE + RS+  +IQ+DWKP
Sbjct: 30  LVNDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKP 79


>AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein.
          Length = 1027

 Score = 79.4 bits (187), Expect = 4e-15
 Identities = 34/50 (68%), Positives = 46/50 (92%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAHDIQEDWKP 663
           LV++LS+++ST++RKMDKSTVLKSTI+FLKNHNE + RS+  +IQ+DWKP
Sbjct: 34  LVDDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKP 83


>AE014296-1324|AAX52755.1|   87|Drosophila melanogaster CG7391-PE,
           isoform E protein.
          Length = 87

 Score = 59.7 bits (138), Expect = 4e-09
 Identities = 26/33 (78%), Positives = 33/33 (100%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHN 612
           LVN+LS+++ST++RKMDKSTVLKSTI+FLKNHN
Sbjct: 34  LVNDLSALISTSSRKMDKSTVLKSTIAFLKNHN 66


>BT022668-1|AAY55084.1|  515|Drosophila melanogaster IP12246p
           protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 662 GFQSSCMSCARDLTDI--SLWFFRKDIVDLSTVDL 564
           GF+ +     +D+ D+  +LW  RKDI ++  +D+
Sbjct: 230 GFRKAAWKVLQDVADLDATLWLLRKDIYEVGKIDV 264


>AY094943-1|AAM11296.1|  469|Drosophila melanogaster RH56938p
           protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 192 QLKPNYTLSCI*VNEKSLFKNIYT--CKLLKNLHD 94
           QL PN TL+C+ +NE  +    +T  C  +KN +D
Sbjct: 171 QLAPNNTLNCVYLNEFQVATTAFTLQCTEVKNWYD 205


>AE014296-3029|AAF49255.3|  473|Drosophila melanogaster CG18234-PB
           protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 662 GFQSSCMSCARDLTDI--SLWFFRKDIVDLSTVDL 564
           GF+ +     +D+ D+  +LW  RKDI ++  +D+
Sbjct: 230 GFRKAAWKVLQDVADLDATLWLLRKDIYEVGKIDV 264


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,146,766
Number of Sequences: 53049
Number of extensions: 536997
Number of successful extensions: 1231
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)