Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    37   0.012
U49829-2|AAA93383.1|  183|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical p...    28   5.5  
U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z81110-1|CAB03258.2|  322|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF370362-1|AAK52515.1|  322|Caenorhabditis elegans putative tran...    28   7.3  
AF039711-1|AAB96712.1|  328|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 406 QFENYCLSSHYRLRSNTIPWARFKTKSHSPLLDNNYACISTVFFYSAQSFCI 251
           QF NYC++   R  S+   W         P+L  NYAC+S  F  +  S CI
Sbjct: 207 QFPNYCIALDLR-NSSFFGWRAVPCTRQLPILCQNYACLSGTFRCADNSKCI 257


>U49829-2|AAA93383.1|  183|Caenorhabditis elegans Hypothetical
           protein F27D9.4 protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 370 LRSNTIPWARFKTKSHSPLLDNNYACIS 287
           L+ N  P + F   SHSPLL   YAC S
Sbjct: 65  LKLNAFPRS-FINSSHSPLLPQKYACFS 91


>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +1

Query: 490 IATGSVYMLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISV 624
           +ATG+  + ++E  +++S +++   KST+ + T+ + +  N ISV
Sbjct: 92  LATGTPLIQISEGENVLSGSSKSNIKSTLPRITVKYTQTGNGISV 136


>U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical
           protein C33H5.18b protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 58  VGLSGDYYMFLFVVQVFK*FTSINIFKQTFFVDLNA*QCIIWF 186
           + L   YYM  F +  +   T + I  Q+FF+  N  Q +IWF
Sbjct: 209 LSLRKGYYMRQFSLFAWTHLTLLLIVSQSFFIIQNIFQGLIWF 251


>U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical
           protein C33H5.18a protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 58  VGLSGDYYMFLFVVQVFK*FTSINIFKQTFFVDLNA*QCIIWF 186
           + L   YYM  F +  +   T + I  Q+FF+  N  Q +IWF
Sbjct: 199 LSLRKGYYMRQFSLFAWTHLTLLLIVSQSFFIIQNIFQGLIWF 241


>Z81110-1|CAB03258.2|  322|Caenorhabditis elegans Hypothetical
           protein T01D3.2 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAH 639
           L NEL    + + + +DK+T+++   +++K HN      RA+
Sbjct: 31  LANELPLARAISGQHIDKTTMVRLATAYIKLHNIFGQSQRAY 72


>AF370362-1|AAK52515.1|  322|Caenorhabditis elegans putative
           transcription factor T01D3.2protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 514 LVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISVRSRAH 639
           L NEL    + + + +DK+T+++   +++K HN      RA+
Sbjct: 31  LANELPLARAISGQHIDKTTMVRLATAYIKLHNIFGQSQRAY 72


>AF039711-1|AAB96712.1|  328|Caenorhabditis elegans Hypothetical
           protein F49D11.6 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 234 KSLITNCALRRSFTQLKPNYTLSCI*VNEKSLFKN 130
           K  + +C LR+S TQL  N  L C+  NE+  F++
Sbjct: 79  KYKLISCGLRKSMTQLTMN--LMCLLYNEQQYFED 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,366
Number of Sequences: 27780
Number of extensions: 305741
Number of successful extensions: 966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)