Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 274 YSAQSFCIFVDSTEIVNNELCTASKFYTIETKLYIVMHLG 155
           ++A  F  +  STEI + +LC   ++  +ET   I  H+G
Sbjct: 290 FTAAPFNGWYMSTEIGSRDLCDVQRYNLLET---IATHMG 326


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = -2

Query: 387 YPAITGCDPIRFLGLVLKPSLIRLY*TIIMHASPLYFFIQHSLSVYLLIVLK 232
           YP + G    +    V + S      TI+  +   Y  I H L VY +  LK
Sbjct: 105 YPWVLGVSLCKIRAYVSEMSSYVSVLTIVAFSMERYLAICHPLRVYTISGLK 156


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 393 TAYPAITGCDPIRFLGLVLK 334
           T  P  TG DP++   ++LK
Sbjct: 560 TGTPPFTGGDPMKTYNIILK 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,455
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)