Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021827
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76705.1 68414.m08926 calmodulin-binding family protein conta...    29   2.9  
At1g66310.1 68414.m07530 F-box family protein contains F-box dom...    29   2.9  
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At3g58770.1 68416.m06550 expressed protein  ; expression support...    27   9.0  

>At1g76705.1 68414.m08926 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 145

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 277 KIQWRCMHNYCLIKANETWF*NEPKESYWIAACNGWISSNFQTERXKS 420
           ++ WR    +  IK    +     +++ W   CNGW SS    E  K+
Sbjct: 19  RVYWRRRAGFKAIKIQSAFKAYLARKALWAGKCNGWDSSALTKEDIKA 66


>At1g66310.1 68414.m07530 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 442

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 243 IVLKSLITNCALRRSFTQLK-PNYTLSCI*VNEKSLFKNIYTCKLLKNLHD 94
           + L+ LI+ C +  S T  + PN  +  + V+ +SL +  Y     K LHD
Sbjct: 181 LALEMLISGCLVLESLTLCRRPNDNVKILRVSSQSLLRFSYNGSSYKGLHD 231


>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1030

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = +1

Query: 502 SVYMLVNELSSMVSTNNRKMDKSTVLKSTISFLKNHNEISV 624
           ++  L NE++ ++ T+  K+D++T L+S +S   + N +SV
Sbjct: 51  AITSLFNEITEILGTDVVKLDETTRLRSHVSGAVSDNGVSV 91


>At3g58770.1 68416.m06550 expressed protein  ; expression supported
           by MPSS
          Length = 771

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 171 LSCI*VNEKSLFKNIYTCKLLKNLHDKQKHVIVTTKPNKIVFRQNRSSHQ 22
           L C+ +N  SL +N+   K   +++DKQ  V+ T + + ++  + R  ++
Sbjct: 215 LCCLEMNRLSLSENLSQRKNQSSVNDKQLKVMSTDQTSTVMHLETRQQYK 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,492
Number of Sequences: 28952
Number of extensions: 269360
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)