Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021826
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   3.3  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    27   3.3  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   3.3  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   5.8  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    26   5.8  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    26   5.8  

>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 455 LSKNNAGVLRPAQRGQKPAWSKRAKAGLI 541
           + K + G L PA   QK AW+ R + GL+
Sbjct: 497 IDKMSRGRLVPADYNQKEAWTWRVEGGLL 525


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -3

Query: 397 EF*TATSVSATSPLCTLGTKHRAPADIIDRAPLP-PNRVSNETMKVVVFSDDRAKRSPTY 221
           +F +A     + P+ T   +   P     RA LP P     E ++V    ++ A+   T 
Sbjct: 354 DFKSALLALNSCPMYTYYERDAYPLPPSARAHLPFPVNFPKEELEV----ENNAQNGYTV 409

Query: 220 ATXLMSPYNARLESSSTGSSF 158
           +T +  PY ARL S S   +F
Sbjct: 410 STEITDPYLARLPSPSLRGTF 430


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 733 LANFVRNDRKSRH-RRIKKQRRYERLAAT 650
           LANF+R DR+S H    +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 310 RAPLPPNRVSNETMKVVVFSDDRAKRSPTYATXLMSPYNARLESSSTGS-SFPADSPKPV 134
           R+  PPN V++   K  +    R K+    A  LMSP   + +SSS+G+     ++ +P 
Sbjct: 65  RSVTPPNDVASSVSKNTL----RHKQRLMMAQWLMSPEVQKAKSSSSGNVGLGPNTNQPF 120

Query: 133 PL 128
           PL
Sbjct: 121 PL 122


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -3

Query: 319 IIDRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATXLMSPYNARLESSSTGSSFPADSPK 140
           +++ +PLP     + ++ V   S      +PT A+ L  P +A L SS   +    +SP+
Sbjct: 598 VLNTSPLPKTPEKDRSLNVTPSSS-----TPTPASVLAPPSSASLSSSKDANRSVPESPR 652

Query: 139 PVPLAVVSLD 110
                 V+LD
Sbjct: 653 REKKNRVTLD 662


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 650 CGSQAFIATLLFDPSMSALPIIANKIRQAL 739
           CGS   I  +LF  S S L   + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -1

Query: 459 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILSTAHRFRPTE* 283
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T      T+ 
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAANTKD 207

Query: 282 VMKQ*K*WFSATIARNDL 229
           + ++    +SA     DL
Sbjct: 208 IEEETMIEYSAQPVVRDL 225


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = -3

Query: 346 GTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATXLMSPYNARLESSSTG 167
           G  H  PA +  R   P + +    +      DD         +     Y + +ESS   
Sbjct: 93  GVYHTRPASLHSRTMAPQHTILTPRLSATEGKDDDEDELVISTSNTAPTYISMIESSRAS 152

Query: 166 SSFPADSPKPVPLAVVS-LDSR 104
           S+    +P  + +++ S  DSR
Sbjct: 153 STHSGTAPSIMGMSIHSRADSR 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,523
Number of Sequences: 5004
Number of extensions: 73161
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)