Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021826
(837 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 74 7e-13
BC011765-1|AAH11765.1| 449|Homo sapiens chromosome 11 open read... 33 0.97
AY358754-1|AAQ89114.1| 449|Homo sapiens C11orf24 protein. 33 0.97
AF264781-1|AAG36936.1| 449|Homo sapiens DM4E3 protein. 33 0.97
AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta va... 32 2.2
X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for ... 31 5.2
M14058-1|AAA51851.1| 705|Homo sapiens C1R protein. 31 5.2
BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1,... 31 5.2
AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of compl... 31 5.2
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 30 9.0
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 30 9.0
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 30 9.0
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 30 9.0
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 30 9.0
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 30 9.0
L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein. 30 9.0
L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein. 30 9.0
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 30 9.0
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 30 9.0
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 30 9.0
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 30 9.0
AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein. 30 9.0
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 73.7 bits (173), Expect = 7e-13
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1
Query: 714 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSGTSC*K 604
MIGRADIEGSKS+VAMNAW PQASYPCGNFS TSC K
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37
>BC011765-1|AAH11765.1| 449|Homo sapiens chromosome 11 open reading
frame 24 protein.
Length = 449
Score = 33.5 bits (73), Expect = 0.97
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -3
Query: 457 QMYRPSQTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR--- 287
Q+ + S PR A + TR AT+ + +SP+ T + + +P+PP R
Sbjct: 194 QVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQA 253
Query: 286 ---VSNETM-KVVVFSDDRAKRSPTYATXLMSPYNARLESSSTGSSFPADSPKPVP 131
+S ++ + VV + +++ P+ T +P + ++ + P SP PVP
Sbjct: 254 QGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVP 309
>AY358754-1|AAQ89114.1| 449|Homo sapiens C11orf24 protein.
Length = 449
Score = 33.5 bits (73), Expect = 0.97
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -3
Query: 457 QMYRPSQTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR--- 287
Q+ + S PR A + TR AT+ + +SP+ T + + +P+PP R
Sbjct: 194 QVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQA 253
Query: 286 ---VSNETM-KVVVFSDDRAKRSPTYATXLMSPYNARLESSSTGSSFPADSPKPVP 131
+S ++ + VV + +++ P+ T +P + ++ + P SP PVP
Sbjct: 254 QGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVP 309
>AF264781-1|AAG36936.1| 449|Homo sapiens DM4E3 protein.
Length = 449
Score = 33.5 bits (73), Expect = 0.97
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -3
Query: 457 QMYRPSQTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR--- 287
Q+ + S PR A + TR AT+ + +SP+ T + + +P+PP R
Sbjct: 194 QVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQA 253
Query: 286 ---VSNETM-KVVVFSDDRAKRSPTYATXLMSPYNARLESSSTGSSFPADSPKPVP 131
+S ++ + VV + +++ P+ T +P + ++ + P SP PVP
Sbjct: 254 QGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVP 309
>AL356489-1|CAC88180.1| 130|Homo sapiens T cell receptor beta
variable 25/OR9-2 protein.
Length = 130
Score = 32.3 bits (70), Expect = 2.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 791 SHDGLTPVHVPF*WVNNPTLGEFCSQ 714
S +G+TP H PF WVN+ G+ CS+
Sbjct: 60 SRNGITP-HPPFLWVNSTEKGDLCSE 84
>X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for
complement component C1r. ).
Length = 705
Score = 31.1 bits (67), Expect = 5.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 78 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 188
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>M14058-1|AAA51851.1| 705|Homo sapiens C1R protein.
Length = 705
Score = 31.1 bits (67), Expect = 5.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 78 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 188
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1, r
subcomponent protein.
Length = 705
Score = 31.1 bits (67), Expect = 5.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 78 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 188
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of
complement component 1 protein.
Length = 705
Score = 31.1 bits (67), Expect = 5.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 78 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 188
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47580-1|AAB59572.1| 810|Homo sapiens MSH2 protein.
Length = 810
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>L47579-1|AAB59571.1| 534|Homo sapiens MSH2 protein.
Length = 534
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
>AC079775-2|AAY15096.1| 586|Homo sapiens unknown protein.
Length = 586
Score = 30.3 bits (65), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 665 FIATLLFDPSMSALPIIANKIRQALDCSPIKKGRELGLD 781
F+ FDP++S L I N + + + + I R+LGLD
Sbjct: 468 FLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLD 506
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,431,347
Number of Sequences: 237096
Number of extensions: 2910222
Number of successful extensions: 5954
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5952
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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