Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021825
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    35   6e-04
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    35   6e-04
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.91 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +2

Query: 254 ACGLTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPT 409
           A  ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G    
Sbjct: 20  AAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLAN 79

Query: 410 FIGYSMQGLCKFGFYEVFKVAYAGMLDDETAY 505
            I Y       F F + +K  + G +D  T +
Sbjct: 80  VIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF 111


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +2

Query: 254 ACGLTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPT 409
           A  ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G    
Sbjct: 20  AAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLAN 79

Query: 410 FIGYSMQGLCKFGFYEVFKVAYAGMLDDETAY 505
            I Y       F F + +K  + G +D  T +
Sbjct: 80  VIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF 111


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 298 HQVEGHHGRVGQTACRTPPTPQRAKYLGDP 209
           HQ + H+G   Q   +T    Q+++  GDP
Sbjct: 22  HQHQQHYGAAVQVPQQTQSVQQQSQQAGDP 51


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 193 RSPVNLDRLNISLFAELVVFCM 258
           R+P NL  +N+++   L++FCM
Sbjct: 84  RTPSNLFVINLAISNFLMMFCM 105


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 193 RSPVNLDRLNISLFAELVVFCM 258
           R+P NL  +N+++   L++FCM
Sbjct: 50  RTPSNLFVINLAISDFLMMFCM 71


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 489 TTRPPTLPYLRVPGGVCVGGIHRRHCP 569
           T  PP LP       +C    H  HCP
Sbjct: 451 TAAPPQLPTEESVDALCNTLHHWHHCP 477


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 297  TRSRGTTAVWVRPHAEHHQLRKERNI*AIQIHRTPWVPQQTPP 169
            T S G++    RP +EH     + +   ++  RT W  QQ PP
Sbjct: 1317 TVSSGSSEDHRRPLSEHIYSSIDSDYSTLE--RTAWRQQQPPP 1357


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 106 GPRNGEFRAASSNEEN 59
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 520  RRYGSVGGLVVQ 485
            + YG+V GLVVQ
Sbjct: 1548 KEYGAVSGLVVQ 1559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,182
Number of Sequences: 438
Number of extensions: 4963
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)