Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021824
(826 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 135 1e-30
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 132 8e-30
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 114 2e-24
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 111 3e-23
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 105 1e-21
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 101 2e-20
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 98 2e-19
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 97 6e-19
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 96 8e-19
UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1; ... 96 1e-18
UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1; ... 90 7e-17
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 89 1e-16
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 89 1e-16
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 86 1e-15
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 85 2e-15
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 85 2e-15
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 84 4e-15
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 84 5e-15
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 83 6e-15
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 83 6e-15
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 83 6e-15
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 83 8e-15
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 83 8e-15
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 83 1e-14
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 82 1e-14
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 81 4e-14
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 80 6e-14
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 80 8e-14
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 80 8e-14
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 80 8e-14
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 79 1e-13
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 79 1e-13
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 79 1e-13
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 79 1e-13
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 79 2e-13
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 79 2e-13
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 79 2e-13
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 79 2e-13
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 79 2e-13
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 78 2e-13
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 78 2e-13
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 78 2e-13
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 78 2e-13
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 78 2e-13
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 78 3e-13
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 78 3e-13
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 78 3e-13
UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1; Picrop... 78 3e-13
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 78 3e-13
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 77 4e-13
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 77 4e-13
UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, wh... 77 4e-13
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 77 4e-13
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 77 4e-13
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 77 5e-13
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 77 5e-13
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 77 7e-13
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 77 7e-13
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 77 7e-13
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 77 7e-13
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 77 7e-13
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 77 7e-13
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 77 7e-13
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 77 7e-13
UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor 4... 77 7e-13
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 76 9e-13
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 76 9e-13
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 76 9e-13
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 76 9e-13
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 76 1e-12
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 76 1e-12
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 76 1e-12
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 76 1e-12
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 76 1e-12
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 75 2e-12
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 75 2e-12
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 75 2e-12
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 75 2e-12
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 75 2e-12
UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein; ... 75 2e-12
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 75 2e-12
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 75 2e-12
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 75 3e-12
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 75 3e-12
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 75 3e-12
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 75 3e-12
UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Re... 75 3e-12
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 74 4e-12
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 74 4e-12
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 74 4e-12
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 74 4e-12
UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=... 74 4e-12
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 74 4e-12
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 74 5e-12
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 74 5e-12
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 74 5e-12
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 74 5e-12
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 74 5e-12
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 73 7e-12
UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=... 73 9e-12
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 73 9e-12
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 73 1e-11
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 73 1e-11
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 72 2e-11
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 72 2e-11
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 72 2e-11
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 72 2e-11
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 72 2e-11
UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2; Ostreo... 72 2e-11
UniRef50_Q7QA96 Cluster: ENSANGP00000013118; n=5; Eumetazoa|Rep:... 72 2e-11
UniRef50_Q54CD6 Cluster: Putative uncharacterized protein; n=1; ... 72 2e-11
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 72 2e-11
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 71 3e-11
UniRef50_Q4AEL1 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 71 3e-11
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 71 3e-11
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 71 3e-11
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 71 3e-11
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 71 4e-11
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 71 4e-11
UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein; ... 71 4e-11
UniRef50_Q54T87 Cluster: Putative uncharacterized protein; n=1; ... 71 4e-11
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 71 4e-11
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 71 4e-11
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 71 5e-11
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 71 5e-11
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 71 5e-11
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 71 5e-11
UniRef50_A2WLP5 Cluster: Putative uncharacterized protein; n=3; ... 71 5e-11
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 70 6e-11
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 70 6e-11
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 70 6e-11
UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila melanogaster|... 70 6e-11
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 70 8e-11
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 70 8e-11
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 70 8e-11
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 70 8e-11
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 70 8e-11
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 70 8e-11
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 70 8e-11
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ... 70 8e-11
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 70 8e-11
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 70 8e-11
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 70 8e-11
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 69 1e-10
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 69 1e-10
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 69 1e-10
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 69 1e-10
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 69 1e-10
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 69 1e-10
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 69 1e-10
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 69 1e-10
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 69 1e-10
UniRef50_Q9FLB0 Cluster: DEAD-box ATP-dependent RNA helicase 18;... 69 1e-10
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 69 1e-10
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 69 1e-10
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 69 2e-10
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 69 2e-10
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 69 2e-10
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 69 2e-10
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 69 2e-10
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 69 2e-10
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 69 2e-10
UniRef50_Q4P9E5 Cluster: ATP-dependent rRNA helicase SPB4; n=2; ... 69 2e-10
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 69 2e-10
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 69 2e-10
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 69 2e-10
UniRef50_UPI0000E49D13 Cluster: PREDICTED: similar to DEAD (Asp-... 68 2e-10
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 68 2e-10
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 68 2e-10
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 68 2e-10
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 68 2e-10
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 68 2e-10
UniRef50_Q4Z5Q6 Cluster: ATP-dependent RNA helicase, putative; n... 68 2e-10
UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n... 68 2e-10
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 68 3e-10
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 68 3e-10
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 68 3e-10
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 68 3e-10
UniRef50_A4EAF2 Cluster: Putative uncharacterized protein; n=1; ... 68 3e-10
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 68 3e-10
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 68 3e-10
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 68 3e-10
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 67 4e-10
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 67 4e-10
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 67 6e-10
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 67 6e-10
UniRef50_Q5FLW7 Cluster: RNA helicase; n=9; Lactobacillus|Rep: R... 67 6e-10
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 67 6e-10
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 67 6e-10
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 67 6e-10
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 67 6e-10
UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1; ... 67 6e-10
UniRef50_Q234J0 Cluster: DEAD/DEAH box helicase family protein; ... 67 6e-10
UniRef50_Q16T16 Cluster: DEAD box ATP-dependent RNA helicase; n=... 67 6e-10
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 67 6e-10
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 67 6e-10
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 67 6e-10
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 66 8e-10
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 66 8e-10
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 66 8e-10
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 66 8e-10
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 66 8e-10
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 66 8e-10
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 66 8e-10
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 66 8e-10
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 66 8e-10
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 66 8e-10
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 66 8e-10
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 66 8e-10
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 66 8e-10
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 66 8e-10
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 66 1e-09
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 66 1e-09
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 66 1e-09
UniRef50_Q014T4 Cluster: Chromosome 07 contig 1, DNA sequence; n... 66 1e-09
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 66 1e-09
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 66 1e-09
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 66 1e-09
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 66 1e-09
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 66 1e-09
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 66 1e-09
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 66 1e-09
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 66 1e-09
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 66 1e-09
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 66 1e-09
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 66 1e-09
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 66 1e-09
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 66 1e-09
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 66 1e-09
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 66 1e-09
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 66 1e-09
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 66 1e-09
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 65 2e-09
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 65 2e-09
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 65 2e-09
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 65 2e-09
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 65 2e-09
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 65 2e-09
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 65 2e-09
UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep: ... 65 2e-09
UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146, w... 65 2e-09
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 65 2e-09
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 65 2e-09
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 65 2e-09
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 65 2e-09
UniRef50_Q00VZ7 Cluster: DEAD/DEAH box helicase, putative; n=2; ... 65 2e-09
UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Re... 65 2e-09
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 65 2e-09
UniRef50_A7U5W8 Cluster: DEAD-box helicase 5; n=6; Plasmodium|Re... 65 2e-09
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 65 2e-09
UniRef50_Q9LU46 Cluster: DEAD-box ATP-dependent RNA helicase 35;... 65 2e-09
UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A... 65 2e-09
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 65 2e-09
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 65 2e-09
UniRef50_UPI00015609AE Cluster: PREDICTED: similar to DEAD (Asp-... 64 3e-09
UniRef50_UPI00003937F7 Cluster: COG0513: Superfamily II DNA and ... 64 3e-09
UniRef50_Q5VQL1-2 Cluster: Isoform 2 of Q5VQL1 ; n=2; Magnolioph... 64 3e-09
UniRef50_Q8G5U3 Cluster: Possible ATP-dependent RNA helicase; n=... 64 3e-09
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 64 3e-09
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 64 3e-09
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 64 3e-09
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 64 3e-09
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 64 3e-09
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 64 3e-09
UniRef50_Q012T2 Cluster: DEAD-box protein abstrakt; n=3; Ostreoc... 64 3e-09
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 64 3e-09
UniRef50_A7RHS2 Cluster: Predicted protein; n=1; Nematostella ve... 64 3e-09
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 64 3e-09
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 64 3e-09
UniRef50_Q10202 Cluster: ATP-dependent RNA helicase dbp3; n=1; S... 64 3e-09
UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=... 64 3e-09
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 64 4e-09
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 64 4e-09
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 64 4e-09
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 64 4e-09
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 64 4e-09
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 64 4e-09
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 64 4e-09
UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma j... 64 4e-09
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 64 4e-09
UniRef50_Q4QIQ9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 64 4e-09
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 64 4e-09
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 64 4e-09
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 64 4e-09
UniRef50_Q9C551 Cluster: DEAD-box ATP-dependent RNA helicase 5; ... 64 4e-09
UniRef50_Q754U8 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 64 4e-09
UniRef50_Q6FM43 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 64 4e-09
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 64 4e-09
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 64 5e-09
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 64 5e-09
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 64 5e-09
UniRef50_A3AD37 Cluster: Putative uncharacterized protein; n=2; ... 64 5e-09
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 64 5e-09
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 64 5e-09
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 64 5e-09
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 64 5e-09
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 64 5e-09
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 64 5e-09
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 63 7e-09
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 63 7e-09
UniRef50_Q62J95 Cluster: ATP-dependent RNA helicase RhlE, putati... 63 7e-09
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 63 7e-09
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 63 7e-09
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 63 7e-09
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 63 7e-09
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 63 7e-09
UniRef50_A0D361 Cluster: Chromosome undetermined scaffold_36, wh... 63 7e-09
UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9; Eu... 63 7e-09
UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family pr... 63 9e-09
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 63 9e-09
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 63 9e-09
UniRef50_A5B712 Cluster: Putative uncharacterized protein; n=1; ... 63 9e-09
UniRef50_Q17KA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 63 9e-09
UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=... 63 9e-09
UniRef50_A7APE7 Cluster: DEAD/DEAH box helicase domain containin... 63 9e-09
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 63 9e-09
UniRef50_A0BDD2 Cluster: Chromosome undetermined scaffold_100, w... 63 9e-09
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 63 9e-09
UniRef50_Q39189 Cluster: DEAD-box ATP-dependent RNA helicase 7; ... 63 9e-09
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 63 9e-09
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 63 9e-09
UniRef50_UPI00015B4D1B Cluster: PREDICTED: similar to DEAD box A... 62 1e-08
UniRef50_Q9RXH8 Cluster: ATP-dependent RNA helicase, putative; n... 62 1e-08
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 62 1e-08
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 62 1e-08
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 62 1e-08
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_Q38DS7 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 62 1e-08
UniRef50_Q1JSQ3 Cluster: Dead-box helicase, putative; n=1; Toxop... 62 1e-08
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 62 1e-08
UniRef50_UPI00006CF9CE Cluster: DEAD/DEAH box helicase family pr... 62 2e-08
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 62 2e-08
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 62 2e-08
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 62 2e-08
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 62 2e-08
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 62 2e-08
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 62 2e-08
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 62 2e-08
UniRef50_Q86XP3 Cluster: ATP-dependent RNA helicase DDX42; n=47;... 62 2e-08
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 62 2e-08
UniRef50_UPI00006CD03A Cluster: P68-like protein, putative; n=1;... 62 2e-08
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 62 2e-08
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 62 2e-08
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 62 2e-08
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 62 2e-08
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 62 2e-08
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 62 2e-08
UniRef50_Q675R0 Cluster: ATP-dependent 61 kDa nucleolar RNA heli... 62 2e-08
UniRef50_Q4UDY7 Cluster: RNA helicase, putative; n=2; Theileria|... 62 2e-08
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 62 2e-08
UniRef50_Q84TG1 Cluster: DEAD-box ATP-dependent RNA helicase 57;... 62 2e-08
UniRef50_Q5JKF2 Cluster: DEAD-box ATP-dependent RNA helicase 40;... 62 2e-08
UniRef50_Q4PDT1 Cluster: ATP-dependent RNA helicase DBP3; n=1; U... 62 2e-08
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 61 3e-08
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 61 3e-08
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 61 3e-08
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 61 3e-08
UniRef50_Q5ENJ0 Cluster: Chloroplast RNA helicase; n=1; Heteroca... 61 3e-08
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 61 3e-08
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 61 3e-08
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 61 3e-08
UniRef50_A2G6R5 Cluster: DEAD/DEAH box helicase family protein; ... 61 3e-08
UniRef50_Q26696 Cluster: Putative DEAD-box RNA helicase HEL64; n... 61 3e-08
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 61 4e-08
UniRef50_Q6KI10 Cluster: DEAD-box ATP-dependent RNA helicase; n=... 61 4e-08
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 61 4e-08
UniRef50_A6GSW1 Cluster: Putative ATP-dependent RNA helicase; n=... 61 4e-08
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 61 4e-08
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 61 4e-08
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 61 4e-08
UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia ... 61 4e-08
UniRef50_Q5CWD0 Cluster: Prp5p C terminal KH. eIF4A-1-family RNA... 61 4e-08
UniRef50_Q54DV7 Cluster: Putative uncharacterized protein; n=1; ... 61 4e-08
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 61 4e-08
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 61 4e-08
UniRef50_Q8SSG7 Cluster: PUTATIVE ATP-DEPENDENT RNA HELICASE; n=... 61 4e-08
UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1; ... 61 4e-08
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 61 4e-08
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 61 4e-08
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 61 4e-08
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 61 4e-08
UniRef50_Q5KHB7 Cluster: ATP-dependent RNA helicase DBP3; n=2; F... 61 4e-08
UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helic... 60 5e-08
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 60 5e-08
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 60 5e-08
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 60 5e-08
UniRef50_Q7QDB7 Cluster: ENSANGP00000017541; n=1; Anopheles gamb... 60 5e-08
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 60 5e-08
UniRef50_Q54CH6 Cluster: Putative uncharacterized protein; n=1; ... 60 5e-08
UniRef50_O97031 Cluster: DjVLGA; n=1; Dugesia japonica|Rep: DjVL... 60 5e-08
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 60 5e-08
UniRef50_P45818 Cluster: ATP-dependent RNA helicase ROK1; n=11; ... 60 5e-08
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 60 5e-08
UniRef50_Q9NXZ2 Cluster: Probable ATP-dependent RNA helicase DDX... 60 5e-08
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 60 5e-08
UniRef50_P24784 Cluster: ATP-dependent RNA helicase DBP1; n=103;... 60 5e-08
UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2; ... 60 5e-08
UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic... 60 7e-08
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 60 7e-08
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 60 7e-08
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 60 7e-08
UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2; ... 60 7e-08
UniRef50_Q7QTB0 Cluster: GLP_15_15676_17025; n=1; Giardia lambli... 60 7e-08
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 60 7e-08
UniRef50_Q4W7T8 Cluster: VASA RNA helicase; n=1; Artemia francis... 60 7e-08
UniRef50_Q4W7T7 Cluster: VASA RNA helicase; n=3; Daphniidae|Rep:... 60 7e-08
UniRef50_Q4MYL1 Cluster: ATP-dependent RNA helicase, putative; n... 60 7e-08
UniRef50_A7AWJ7 Cluster: DEAD/DEAH box helicase and helicase con... 60 7e-08
UniRef50_A5K071 Cluster: ATP-dependent RNA helicase, putative; n... 60 7e-08
UniRef50_A0BDT5 Cluster: Chromosome undetermined scaffold_101, w... 60 7e-08
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 60 7e-08
UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4; F... 60 7e-08
UniRef50_UPI0000F2BC8C Cluster: PREDICTED: similar to eukaryotic... 60 9e-08
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 60 9e-08
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 60 9e-08
UniRef50_Q869K2 Cluster: Similar to Dictyostelium discoideum (Sl... 60 9e-08
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 60 9e-08
UniRef50_Q23WN3 Cluster: Helicase conserved C-terminal domain co... 60 9e-08
UniRef50_A2D7F9 Cluster: DEAD/DEAH box helicase family protein; ... 60 9e-08
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 60 9e-08
UniRef50_UPI00004994C0 Cluster: DEAD/DEAH box helicase; n=2; Ent... 59 1e-07
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 59 1e-07
UniRef50_Q2J919 Cluster: Helicase-like; n=3; Frankia|Rep: Helica... 59 1e-07
UniRef50_Q0S0C7 Cluster: ATP-dependent RNA helicase; n=5; Actino... 59 1e-07
UniRef50_Q0HLM7 Cluster: DEAD/DEAH box helicase domain protein; ... 59 1e-07
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 59 1e-07
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 59 1e-07
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 59 1e-07
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 59 1e-07
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 59 1e-07
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 59 1e-07
UniRef50_Q2H0K3 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 59 1e-07
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 59 1e-07
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 59 1e-07
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 59 2e-07
UniRef50_UPI0000499ECF Cluster: DEAD/DEAH box helicase; n=1; Ent... 59 2e-07
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 59 2e-07
UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein; ... 59 2e-07
UniRef50_A4S461 Cluster: Predicted protein; n=1; Ostreococcus lu... 59 2e-07
UniRef50_Q4Y0X7 Cluster: DEAD-box RNA helicase, putative; n=2; P... 59 2e-07
UniRef50_Q4QIG1 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 59 2e-07
UniRef50_A2DSJ0 Cluster: DEAD/DEAH box helicase family protein; ... 59 2e-07
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 59 2e-07
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 59 2e-07
UniRef50_P21372 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 59 2e-07
UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116, mito... 59 2e-07
UniRef50_Q8NHQ9 Cluster: ATP-dependent RNA helicase DDX55; n=86;... 59 2e-07
UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box A... 58 2e-07
UniRef50_UPI0000F1F65D Cluster: PREDICTED: hypothetical protein;... 58 2e-07
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 58 2e-07
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 58 2e-07
UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein; ... 58 2e-07
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 58 2e-07
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 58 2e-07
UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;... 58 2e-07
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 58 2e-07
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 58 2e-07
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 58 2e-07
UniRef50_Q80Y44 Cluster: Probable ATP-dependent RNA helicase DDX... 58 2e-07
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 58 2e-07
UniRef50_Q0UMB6 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 58 2e-07
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 58 3e-07
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 58 3e-07
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 58 3e-07
UniRef50_Q6MHS8 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 58 3e-07
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 58 3e-07
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 58 3e-07
UniRef50_A7CSF3 Cluster: DEAD/DEAH box helicase domain protein; ... 58 3e-07
UniRef50_Q012E3 Cluster: DEAD-box protein abstrakt; n=1; Ostreoc... 58 3e-07
UniRef50_Q6BG49 Cluster: RNA helicase, putative; n=1; Paramecium... 58 3e-07
UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4; Eukaryota|... 58 3e-07
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 58 3e-07
UniRef50_Q4N4Z2 Cluster: ATP-dependent RNA helicase, putative; n... 58 3e-07
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 58 3e-07
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 58 3e-07
UniRef50_A7SE71 Cluster: Predicted protein; n=1; Nematostella ve... 58 3e-07
UniRef50_A2FQ89 Cluster: Type III restriction enzyme, res subuni... 58 3e-07
UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia girella... 58 3e-07
UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3; Eut... 58 3e-07
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 58 3e-07
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 58 3e-07
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 58 3e-07
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 58 3e-07
UniRef50_UPI00015564E6 Cluster: PREDICTED: similar to DEAD (Asp-... 58 4e-07
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 58 4e-07
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 58 4e-07
UniRef50_O54116 Cluster: Probable DEAD-box RNA helicase; n=10; S... 58 4e-07
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 58 4e-07
UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1; ... 58 4e-07
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 58 4e-07
UniRef50_Q9GV12 Cluster: Vasa-related protein CnVAS2; n=14; Eume... 58 4e-07
UniRef50_Q93382 Cluster: Putative uncharacterized protein; n=2; ... 58 4e-07
UniRef50_Q66WQ1 Cluster: DEAD box DNA helicase; n=2; Plasmodium ... 58 4e-07
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 58 4e-07
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 58 4e-07
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 58 4e-07
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 135 bits (326), Expect = 1e-30
Identities = 63/85 (74%), Positives = 75/85 (88%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRDVIAQ+QSGTGKTATFSIS+LQ +D +RE QALILAPTRELA QIQK ++ALGD++
Sbjct: 74 KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM 133
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
N +CHACIGGTNV EDIR+L+ G H
Sbjct: 134 NVQCHACIGGTNVGEDIRKLDYGQH 158
Score = 114 bits (275), Expect = 2e-24
Identities = 51/96 (53%), Positives = 73/96 (76%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V GTPGRV+DMI RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+S
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 218
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+P ++LE++ FM DP+RILV++ L + + F
Sbjct: 219 ATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF 254
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = +3
Query: 141 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI IK
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK 74
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 132 bits (320), Expect = 8e-30
Identities = 61/100 (61%), Positives = 81/100 (81%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV+DM+ RR L IK+FVLDEADEMLSRGFKDQI+++F+ L+ +QV+LLS
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 214
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
ATMP DVLEV++ FMRDP+RILV+K+ L + + F + +
Sbjct: 215 ATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV 254
Score = 129 bits (311), Expect = 1e-28
Identities = 58/82 (70%), Positives = 74/82 (90%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQIQKV++ALGD++
Sbjct: 69 KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM 128
Query: 434 NAKCHACIGGTNVREDIRQLES 499
A CHACIGGTNVR ++++L++
Sbjct: 129 GATCHACIGGTNVRNEMQKLQA 150
Score = 99.5 bits (237), Expect = 9e-20
Identities = 45/68 (66%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Frame = +3
Query: 60 NGPSKDQG-SYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQ 233
+G S D + GP GMDP G ++++W+++V+ FDDMNLKE LLRGIYAYGFEKPSAIQQ
Sbjct: 2 SGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQ 61
Query: 234 RAIMPCIK 257
RAI+PCIK
Sbjct: 62 RAIIPCIK 69
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 114 bits (275), Expect = 2e-24
Identities = 51/96 (53%), Positives = 73/96 (76%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V GTPGRV+DMI RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+S
Sbjct: 138 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 197
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+P ++LE++ FM DP+RILV++ L + + F
Sbjct: 198 ATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF 233
Score = 81.4 bits (192), Expect = 3e-14
Identities = 46/85 (54%), Positives = 57/85 (67%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRDVIAQ+QSGTGKTATFS+S+LQ +D Q L+ ALGD++
Sbjct: 74 KGRDVIAQSQSGTGKTATFSVSVLQCLDI-----QGLL----------------ALGDYM 112
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
N +CHACIGGTNV EDIR+L+ G H
Sbjct: 113 NVQCHACIGGTNVGEDIRKLDYGQH 137
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = +3
Query: 141 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI IK
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK 74
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 111 bits (266), Expect = 3e-23
Identities = 53/105 (50%), Positives = 73/105 (69%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E +VVGTPGRV D+I ++ L + +KLF+LDEADEML RGFKDQI+ +F+ L D+QV
Sbjct: 218 EGVQVVVGTPGRVLDLIQKKTLVTDHLKLFILDEADEMLGRGFKDQINKIFQNLPHDIQV 277
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
L SATM ++LE+++ FMRDP ILV+ L + F + L+
Sbjct: 278 ALFSATMAPEILEITKQFMRDPATILVKNDDLTLDGIKQFYIALD 322
Score = 78.2 bits (184), Expect = 2e-13
Identities = 42/61 (68%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ-IQKVVIALGDH 430
+G+D IAQAQSGTGKTATFSI+ LQ IDTS QALILAPTRELAQQ I ++ LG +
Sbjct: 70 KGKDTIAQAQSGTGKTATFSIATLQVIDTSSPHTQALILAPTRELAQQTITRIFFILGVN 129
Query: 431 L 433
L
Sbjct: 130 L 130
Score = 37.9 bits (84), Expect = 0.30
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 401 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+KV++ LG+ L +AC GGT+ +ED ++L GV
Sbjct: 186 KKVIMYLGEFLKVSAYACTGGTDPKEDRKRLREGV 220
Score = 33.9 bits (74), Expect = 5.0
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 186 RGIYAYGFEKPSAIQQRAIMPCIK 257
+ + +YGFEKPS IQQ I+P IK
Sbjct: 47 QNVLSYGFEKPSPIQQCGIIPIIK 70
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 105 bits (253), Expect = 1e-21
Identities = 48/92 (52%), Positives = 69/92 (75%)
Frame = +1
Query: 529 RVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 708
RV+D++ RRA+ A I+L VLDEAD+ML GFKDQIH++F L +VQ ILLSATMP V
Sbjct: 112 RVFDVLARRAVSAKAIRLLVLDEADQMLGNGFKDQIHEIFCKLPTNVQAILLSATMPAHV 171
Query: 709 LEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQ 804
LE ++ FM+DPV+IL++++ L + + F ++
Sbjct: 172 LEATKMFMQDPVKILIKREELTMEGIQQFYIK 203
Score = 75.4 bits (177), Expect = 2e-12
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 418
+G DVIAQ+QSGTGKTAT+ I+ LQ+ID + QA+ILAPTRELA QIQKVV++
Sbjct: 57 KGFDVIAQSQSGTGKTATYVIAALQRIDMMKEDTQAIILAPTRELANQIQKVVLS 111
Score = 64.1 bits (149), Expect = 4e-09
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
V++F+ M L E LLRGI+AYGFEKPSAIQQ+AI+PCIK
Sbjct: 20 VDSFEGMMLNENLLRGIFAYGFEKPSAIQQQAIVPCIK 57
>UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole
genome shotgun sequence; n=2; Euteleostomi|Rep:
Chromosome undetermined SCAF9757, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 101 bits (242), Expect = 2e-20
Identities = 44/57 (77%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Frame = +3
Query: 90 DGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
+GP GMDP G ++T+WD VV+ FDDMNLKE LLRG+YAYGFEKPSAIQQRAI+PCIK
Sbjct: 10 NGPEGMDPDGVIETNWDTVVDNFDDMNLKESLLRGVYAYGFEKPSAIQQRAILPCIK 66
Score = 83.8 bits (198), Expect = 5e-15
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 409
+G DVIAQAQSGTGKTATF ISILQ+IDTS++E QALILAPTRELAQQ K+
Sbjct: 66 KGHDVIAQAQSGTGKTATFVISILQRIDTSLKETQALILAPTRELAQQEWKL 117
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 98.3 bits (234), Expect = 2e-19
Identities = 46/84 (54%), Positives = 61/84 (72%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G+DV+AQAQSGTGKT TF+I LQ+ID + R+ Q +ILAP RELA+QI VV +G +LN
Sbjct: 93 GKDVLAQAQSGTGKTGTFTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLN 152
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ CIGGT+ +E + + GVH
Sbjct: 153 IEAFCCIGGTSTQETREKCKQGVH 176
Score = 90.6 bits (215), Expect = 4e-17
Identities = 39/101 (38%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ DM+ + L A ++L V+DEAD+ML +GF D ++ KM+ D+Q+ L S
Sbjct: 177 IIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFS 236
Query: 688 ATMPDDVLEVSRCFMRD-PVRILVQKKSLPWKVLNNFTLQL 807
AT P +++E+S+ F+RD +ILV+K+ L + + F + +
Sbjct: 237 ATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAI 277
Score = 64.5 bits (150), Expect = 3e-09
Identities = 27/45 (60%), Positives = 37/45 (82%)
Frame = +3
Query: 120 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
L +W + VETF+D+ L ++LLRGI++YGFE+PSAIQQ+AI P I
Sbjct: 47 LQENWIEQVETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPII 91
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 96.7 bits (230), Expect = 6e-19
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGRV D I R LH +++ +F+LDEAD+ML GF++ I D+F+ D Q IL S
Sbjct: 127 VVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
ATMP +L+++R F RDP + + +K L
Sbjct: 187 ATMPQPILDITRRFQRDPQFVKITRKEL 214
Score = 60.1 bits (139), Expect = 7e-08
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 397
G+DV QAQ+GTGKTA F I I++++D + QAL+L+PTRELA Q
Sbjct: 42 GKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQ 88
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 96.3 bits (229), Expect = 8e-19
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = +3
Query: 69 SKDQGSYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIM 245
SKD G GP GM+P G ++++W ++ + FDDMNLKE LLRGIYAYGFEKPSAIQQRAI+
Sbjct: 11 SKDHG---GPDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 67
Query: 246 PCIK 257
PCIK
Sbjct: 68 PCIK 71
Score = 76.6 bits (180), Expect = 7e-13
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 397
+G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQ
Sbjct: 71 KGYDVIAQAQSGTGKTATFAISILQQLEIDQKETQALVLAPTRELAQQ 118
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +1
Query: 646 FKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
F+ LS ++QV+LLSATMP +VLEV++ FMRDPVRILV+K+ L + + F + +
Sbjct: 160 FQKLSTNIQVVLLSATMPAEVLEVTKKFMRDPVRILVKKEELTLEGIKQFYINV 213
>UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 339
Score = 95.9 bits (228), Expect = 1e-18
Identities = 45/65 (69%), Positives = 54/65 (83%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G DVI QAQSGTGKTATF ILQQ++ + +CQAL+LAPTRELAQQI+KV+ ALGDHL
Sbjct: 48 KGLDVIQQAQSGTGKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGDHL 107
Query: 434 NAKCH 448
N K +
Sbjct: 108 NVKIY 112
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/55 (40%), Positives = 40/55 (72%)
Frame = +1
Query: 631 QIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
+I+++F++L +QV + SATMP +VLE+++ F+ PVRILV+++ L + + F
Sbjct: 110 KIYEIFQLLPERIQVGVFSATMPPEVLEITKKFINKPVRILVKREELTLEGIRQF 164
>UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 377
Score = 89.8 bits (213), Expect = 7e-17
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QG DVIAQAQSGTGKT+ F++++ Q +DTS RE QALI +PTRELA Q +KV++A+GD +
Sbjct: 312 QGHDVIAQAQSGTGKTSMFALTVYQMVDTSNREVQALISSPTRELASQTEKVILAIGDSV 371
Query: 434 NAKCH 448
N + H
Sbjct: 372 NIQAH 376
Score = 61.7 bits (143), Expect = 2e-08
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +3
Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
T+ +++ +FD M +K +LLRGIYAY FEKPSA+QQRA++P I+
Sbjct: 269 TEGVELIMSFDQMGIKNDLLRGIYAYSFEKPSAVQQRAVLPIIQ 312
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 89.0 bits (211), Expect = 1e-16
Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D+I R++L N I VLDEADEML+ GF D + ++ K L D Q +L S
Sbjct: 127 IVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFS 186
Query: 688 ATMPDDVLEVSRCFMR-DPVRILVQKKSLPWKVLNNFTLQL 807
ATMP + +++R +M+ D I ++K SL + F ++
Sbjct: 187 ATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEI 227
Score = 71.3 bits (167), Expect = 3e-11
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGD 427
+G D+I QAQ+GTGKTA F +I+ D S ++ +ALILAPTRELA Q+ + ++ LG
Sbjct: 40 EGHDIIGQAQTGTGKTAAFGCAIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGK 99
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
H GG + IR L++GV
Sbjct: 100 HEKLSVLPIYGGQPIDRQIRALKNGV 125
Score = 37.9 bits (84), Expect = 0.30
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
FDD+ LKE LL+ I GFE+PS IQ +I
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESI 35
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 89.0 bits (211), Expect = 1e-16
Identities = 41/84 (48%), Positives = 56/84 (66%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTGKTA F I L+++ + + QALI+ PTRELA Q +VV LG H
Sbjct: 83 GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 142
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
C GGTN+R+DI +L VH
Sbjct: 143 ISCMVTTGGTNLRDDILRLNETVH 166
Score = 64.5 bits (150), Expect = 3e-09
Identities = 34/85 (40%), Positives = 46/85 (54%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E ++VGTPGRV D+ +R+ + LF++DEAD+MLSR FK I + L Q
Sbjct: 163 ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQS 222
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRI 750
+L SAT P V E + P I
Sbjct: 223 LLFSATFPLTVKEFMVKHLHKPYEI 247
Score = 44.0 bits (99), Expect = 0.005
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
TF+D LK ELL GI+ GFEKPS IQ+ AI
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAI 77
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 85.8 bits (203), Expect = 1e-15
Identities = 41/86 (47%), Positives = 55/86 (63%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++VGTPGR+ D I R+ L + IK VLDEADEML GFK + VF+ Q +L
Sbjct: 121 NIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLF 180
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQK 762
SATMP VLE++ + +PV I+V K
Sbjct: 181 SATMPKQVLEIANNYQTNPVEIVVTK 206
Score = 58.4 bits (135), Expect = 2e-07
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
+D+I ++ +GTGKT F + ILQ ++T +++ QA+IL PT ELA QI + V +L
Sbjct: 39 QDIIGKSHTGTGKTVAFIVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEG 98
Query: 440 KCHACI-GGTNVREDIRQL 493
I GG++++ I L
Sbjct: 99 VNATLICGGSHIQRQIYAL 117
>UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: ATP-dependent RNA
helicase - Neptuniibacter caesariensis
Length = 417
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C +VV TPGR+ D++ + AL +K VLDEAD ML GF D++ D+ +VQ +L
Sbjct: 126 CDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLL 185
Query: 682 LSATMPDDVLEVSRCFMRDPVRILV-QKKSLP 774
SAT PD V E++ +R+PV I V Q+ +LP
Sbjct: 186 FSATFPDKVKELTEELLRNPVEISVKQEATLP 217
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVV 412
A+ +G D+IA A++G+GKTA F + +L+++ + AL+L PTRELA Q+ + V
Sbjct: 34 AVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSIPAPGNNLTHALVLVPTRELAVQVSQSV 93
Query: 413 IALGDHLNAKCH--ACIGGTNVREDIRQLESG 502
++ K A GG + ++ L G
Sbjct: 94 DRYSENCPRKIRSVAIYGGAAINPQMQSLSKG 125
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 85.0 bits (201), Expect = 2e-15
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
GRD++A+A++GTGKTA+F I L +I+TS+ QALIL PTRELA Q +V LG H+
Sbjct: 73 GRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP 132
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
N + GGT +R+DI +L+ VH
Sbjct: 133 NLQVMITTGGTTLRDDILRLQQPVH 157
Score = 56.0 bits (129), Expect = 1e-06
Identities = 30/81 (37%), Positives = 43/81 (53%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D+ ++ N +FV+DEAD++LS F I + + QV+L S
Sbjct: 158 ILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTLALCPQERQVMLFS 217
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P V E M P I
Sbjct: 218 ATFPWTVKEFKDQHMVQPYEI 238
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +3
Query: 78 QGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
QG P + P T D Q F+D L+ ELL GIY GFE+PS IQ++AI
Sbjct: 14 QGLAAPPKDLRPQTEDVTATQG-SRFEDFGLRRELLMGIYTAGFERPSPIQEQAI 67
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 84.2 bits (199), Expect = 4e-15
Identities = 36/88 (40%), Positives = 62/88 (70%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D I+RR + + VLDEADEML+ GF D + ++ K +S + +++L S
Sbjct: 124 IVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT+PD ++++++ +MR+ I V+++ L
Sbjct: 184 ATLPDSIMKLAKNYMREYDIIKVKRQQL 211
Score = 77.4 bits (182), Expect = 4e-13
Identities = 39/82 (47%), Positives = 51/82 (62%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
RD++ QAQ+GTGKTA F I IL+ ID S R QALILAPTRELA Q+ + + ++
Sbjct: 41 RDIVGQAQTGTGKTAAFGIPILETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKRL 100
Query: 440 KCHACIGGTNVREDIRQLESGV 505
GG ++ IR+L GV
Sbjct: 101 NVFPVYGGQSIDRQIRELRRGV 122
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 83.8 bits (198), Expect = 5e-15
Identities = 41/87 (47%), Positives = 55/87 (63%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
AL QG+DVI QAQ+GTGKTA F + I++++ R QAL+L PTRELA Q+ + + +G
Sbjct: 39 ALLQGKDVIGQAQTGTGKTAAFGVPIVERLVPGQRAVQALVLTPTRELAIQVAEEITKIG 98
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGV 505
H K A GG ++ IR L GV
Sbjct: 99 RHARVKTIAIYGGQSIERQIRSLRFGV 125
Score = 79.0 bits (186), Expect = 1e-13
Identities = 36/88 (40%), Positives = 56/88 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D + R L + +++ VLDEADEML GF + I + + A+ Q +L S
Sbjct: 127 VVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
ATMP ++ ++ +MRDP+ I V + L
Sbjct: 187 ATMPPEIRRLAGRYMRDPITISVTPQQL 214
Score = 33.5 bits (73), Expect = 6.6
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
TF D+ L E++L+ + GFE+PS IQ +AI
Sbjct: 7 TFRDLALSEKVLKALDDMGFEEPSPIQAQAI 37
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 83.4 bits (197), Expect = 6e-15
Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D++ R L + +K FVLDEADEMLS GF D + + D Q L S
Sbjct: 124 IVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILV-QKKSLPWKV 783
ATMP + + F+R PV + V Q K+ P K+
Sbjct: 184 ATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKI 216
Score = 75.8 bits (178), Expect = 1e-12
Identities = 36/87 (41%), Positives = 54/87 (62%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L GRDV+ Q+Q+GTGKTA FS+ IL+++D + QA++L PTRELA Q+ +
Sbjct: 37 LLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVG 96
Query: 428 HLNAKCHACIGGTNVREDIRQLESGVH 508
+ + A GG ++ + QL+ GVH
Sbjct: 97 NSGLRTLAIYGGQSIDRQMLQLKRGVH 123
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 83.4 bits (197), Expect = 6e-15
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D I R L +++ VLDEADEML GF++ I + + VQ S
Sbjct: 127 VVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
ATMPD +LE++R F+R+P + V ++ L
Sbjct: 187 ATMPDGILELARRFLREPELLRVTRRQL 214
Score = 76.2 bits (179), Expect = 9e-13
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +GRDVI QAQ+GTGKTA F + +LQ+ID + R QAL+L PTRELA Q+ + AL
Sbjct: 39 LLEGRDVIGQAQTGTGKTAAFGLPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAK 98
Query: 428 HL-NAKCHACIGGTNVREDIRQLESG 502
HL + + GG + L G
Sbjct: 99 HLRGVRILSVYGGQPIEPQASALRRG 124
Score = 37.1 bits (82), Expect = 0.53
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
VE+F D+ L+EELL+ I GF +PS IQ AI
Sbjct: 4 VESFKDLPLEEELLKAIEELGFTEPSPIQSIAI 36
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 83.4 bits (197), Expect = 6e-15
Identities = 34/100 (34%), Positives = 64/100 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++GTPGRV D I R+ L + + L VLDEAD+ML GF++ I ++ + + Q ++LS
Sbjct: 126 IIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVILS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
AT P ++L++SR F ++P+ + + + L + + +++
Sbjct: 186 ATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEV 225
Score = 53.2 bits (122), Expect = 8e-06
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G DV QA +GTGKTA F I ++ + R Q ++L P+RELA Q+ + L H
Sbjct: 41 GNDVAGQAYTGTGKTAAFGIPAIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKK 100
Query: 437 A-KCHACIGGTNVREDIRQLESGV 505
GG + I+ L GV
Sbjct: 101 GISILPVYGGQPIERQIKALSRGV 124
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 83.0 bits (196), Expect = 8e-15
Identities = 37/96 (38%), Positives = 57/96 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ + TPGR D+I L K+ VLDEAD+MLS F +Q++D+ + DVQ++L S
Sbjct: 216 ICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPEDVQILLFS 275
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+ + + FM DP RIL++K+ L + + F
Sbjct: 276 ATISQSIFHIMNTFMNDPFRILIKKEQLTLEGIKQF 311
Score = 69.3 bits (162), Expect = 1e-10
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
R VIAQAQSGTGKT FSI +L +ID S + QAL+LAPTRELA QI V +G +
Sbjct: 131 RHVIAQAQSGTGKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRI 188
Score = 46.4 bits (105), Expect = 9e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 84 SYDG-PPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
SY+ P D +W V+ FD M+L LL+G+Y+YGF PS IQ AI
Sbjct: 69 SYEAMTPAQDDPNFIPNWTTRVDDFDQMDLPPALLQGVYSYGFRAPSEIQAIAI 122
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 83.0 bits (196), Expect = 8e-15
Identities = 37/101 (36%), Positives = 60/101 (59%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++VGTPGR+ D I RR + N + V+DEADEML+ GF D I + + ++ Q +L
Sbjct: 123 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 182
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
SATMP + ++ FM +P + V+ K + + F L++
Sbjct: 183 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEV 223
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/79 (41%), Positives = 50/79 (63%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
+DVI QAQ+GTGKTA F I ++++I+ QA+++APTRELA Q+ + + +G A
Sbjct: 41 KDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRA 100
Query: 440 KCHACIGGTNVREDIRQLE 496
K GG ++ IR L+
Sbjct: 101 KVLPIYGGQDIGRQIRALK 119
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 82.6 bits (195), Expect = 1e-14
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
GRD++A+A++GTGK+ + I +L++ID QAL+L PTRELA Q+ ++ I + HL
Sbjct: 126 GRDILARAKNGTGKSGAYLIPMLERIDLKKDHIQALVLVPTRELALQVSQISIQIAKHLG 185
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
K A GGTN+R+DI +L+ VH
Sbjct: 186 GVKVMATTGGTNLRDDIMRLDETVH 210
Score = 38.3 bits (85), Expect = 0.23
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK ELL GI+ G+EKPS IQ+ +I
Sbjct: 91 FEDYCLKRELLMGIFEMGWEKPSPIQEESI 120
Score = 34.7 bits (76), Expect(2) = 0.002
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 586 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 750
V +AD++LS+ F + D+ L+ + Q++L SAT P V + ++ P I
Sbjct: 264 VSPQADKLLSQDFVALVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEI 318
Score = 29.5 bits (63), Expect(2) = 0.002
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDE 597
E +V+ TPGR+ D++ + + +++ V+DE
Sbjct: 207 ETVHVVIATPGRILDLMKKGVAKVDKVQIMVMDE 240
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 82.2 bits (194), Expect = 1e-14
Identities = 36/87 (41%), Positives = 56/87 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGRV D + R L + +K VLDEADEML GF + + +V + L A QV L S
Sbjct: 137 VIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFS 196
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP + +++ +++DP+ + + K+
Sbjct: 197 ATMPPQIRRIAQTYLQDPIEVTIATKT 223
Score = 60.9 bits (141), Expect = 4e-08
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
AL GRDV+ QAQ+GTGKTA F++ +L + + + Q L+LAPTRELA Q+ +
Sbjct: 48 ALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYA 107
Query: 425 DHLNA-KCHACIGGTNVREDIRQLESGVH 508
++ + GG + + + L+ GVH
Sbjct: 108 ASISGFRVLPVYGGQSYGQQLAALKRGVH 136
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 80.6 bits (190), Expect = 4e-14
Identities = 39/103 (37%), Positives = 59/103 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D I R+ L ++ VLDEADEML+ GF + I + + Q +L S
Sbjct: 123 IIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*K 816
ATMPD + ++ FM +P I V+ K + + F L++ K
Sbjct: 183 ATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEK 225
Score = 77.4 bits (182), Expect = 4e-13
Identities = 34/85 (40%), Positives = 52/85 (61%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QG+D+I QAQ+GTGKTA F + +L ++DT Q +++APTRELA Q+ + + +G H
Sbjct: 38 QGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHK 97
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ GG ++ IR L+ H
Sbjct: 98 RVRILPIYGGQDINRQIRALKKHPH 122
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 80.2 bits (189), Expect = 6e-14
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +GRDV+ AQ+GTGKTA F++ IL ID +R QAL+L PTRELAQQ+ + + G
Sbjct: 43 LLEGRDVVGLAQTGTGKTAAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGR 102
Query: 428 HLNA-KCHACIGGTNVREDIRQLESGVH 508
+ + + GG ++R+ ++ L G H
Sbjct: 103 GMGGLRILSIFGGADMRQQLKSLREGTH 130
Score = 66.5 bits (155), Expect = 8e-10
Identities = 35/87 (40%), Positives = 48/87 (55%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E +VV TPGR+ D I RR++ I VLDEADEML GF D + + + +V
Sbjct: 127 EGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKV 186
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILV 756
L SATMP V +++ + +P I V
Sbjct: 187 ALFSATMPKRVRDIANKHLSNPAEISV 213
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 79.8 bits (188), Expect = 8e-14
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ D + R ++H + IK+ VLDEADEML GF++ + + K AD Q I+ S
Sbjct: 131 IVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIMFS 190
Query: 688 ATMPDDVLEVSRCFMRDP--VRILVQKKSLP 774
ATM DDVL + + F P + + QK S P
Sbjct: 191 ATMTDDVLTLMKKFQNHPQIIDVTHQKLSAP 221
Score = 57.6 bits (133), Expect = 4e-07
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G+D+I AQ+GTGKTA F+I ++ ++ + QALIL PTREL Q+ + L +
Sbjct: 45 KGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYK 104
Query: 434 -NAKCHACIGGTNVREDIRQL 493
N + GG + +R L
Sbjct: 105 GNFEVVPIYGGQEIERQLRAL 125
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 79.8 bits (188), Expect = 8e-14
Identities = 35/84 (41%), Positives = 55/84 (65%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D I + N+I VLDEADEML+ GF + I + L + Q++L S
Sbjct: 174 VVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFS 233
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
ATMP+++ +++ ++ DP IL++
Sbjct: 234 ATMPNEIRNIAKKYLNDPAEILIK 257
Score = 60.1 bits (139), Expect = 7e-08
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAL-GDH 430
GRD++ QAQ+GTGKTA F++ +++++ D + L++ PTRELA Q+ + + +
Sbjct: 88 GRDLLGQAQTGTGKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSES 147
Query: 431 LNAKCHACIGGTNVREDIRQLESGV 505
N K A GGT+ R I L+ V
Sbjct: 148 TNFKTIAIYGGTDYRNQIYALKRKV 172
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 79.8 bits (188), Expect = 8e-14
Identities = 39/104 (37%), Positives = 64/104 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D I + L + + V+DEADEML+ GF +Q+ + K L + +L S
Sbjct: 123 IVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KN 819
AT+P D+ ++SR +M++P I V+ L + + + +Q+ +N
Sbjct: 183 ATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREEN 226
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/83 (32%), Positives = 49/83 (59%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
+D++ ++Q+G+GKTA+F I + + + + QALIL PTRELA Q+++ + +G
Sbjct: 40 KDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRI 99
Query: 440 KCHACIGGTNVREDIRQLESGVH 508
K A G ++ + +L+ H
Sbjct: 100 KATAVFGKSSFDKQKAELKQKSH 122
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 79.0 bits (186), Expect = 1e-13
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G+D+I QAQ+GTGKTA F+I IL +D SI Q L++APTRELA QI + LG +
Sbjct: 37 EGKDIIGQAQTGTGKTAAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYT 96
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+K +GG + + L SGV+
Sbjct: 97 CSKIALILGGVSYEKQKAALNSGVN 121
Score = 52.0 bits (119), Expect = 2e-05
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++VV TPGR+ D++ + + + IK F LDEADE+L GF ++I + L Q
Sbjct: 121 NIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFF 180
Query: 685 SATMPDDVLEVSR 723
+AT + ++S+
Sbjct: 181 TATFDEKTKKLSQ 193
Score = 35.5 bits (78), Expect = 1.6
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 248
F MN+K E+L+ + GFEKP+ IQ+ A++P
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQE-AVLP 33
>UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Rhodobacteraceae|Rep: DEAD/DEAH box helicase domain
protein - Dinoroseobacter shibae DFL 12
Length = 508
Score = 79.0 bits (186), Expect = 1e-13
Identities = 39/97 (40%), Positives = 60/97 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L+V TPGR+ D++ R+AL + + VLDEAD+ML GF + + +L A+ Q +L S
Sbjct: 197 LIVATPGRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLFS 256
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFT 798
ATMP + E+SR ++ DP R+ V + P K+ + T
Sbjct: 257 ATMPKQMEELSRAYLTDPARVEV---APPGKIADKIT 290
Score = 61.7 bits (143), Expect = 2e-08
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIAL 421
GRDV+ AQ+GTGKTA F + +L + + R C+ LILAPTREL QI + + A
Sbjct: 108 GRDVLGIAQTGTGKTAAFGLPLLDALMKAGTKPAPRTCRGLILAPTRELVSQICESLRAF 167
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
+ + K +GG + I++ E G
Sbjct: 168 TEGSHLKLQVIVGGVAIGPQIKRAERG 194
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 79.0 bits (186), Expect = 1e-13
Identities = 38/103 (36%), Positives = 60/103 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D I R L + VLDEADEML+ GF + I + + A+ Q +L S
Sbjct: 123 VIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*K 816
ATMPD + ++ FM +P + V+ K + + + L+++ K
Sbjct: 183 ATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEK 225
Score = 70.1 bits (164), Expect = 6e-11
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
Q +DVI QAQ+GTGKTA F I I+++++ QAL++APTRELA Q+ + + +G
Sbjct: 38 QNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVK 97
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ GG ++ IR L+ H
Sbjct: 98 RVRVLPIYGGQDIERQIRALKKHPH 122
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 79.0 bits (186), Expect = 1e-13
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D I R L+ + ++ VLDEADEML GF D + V L + Q L S
Sbjct: 127 VVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFS 186
Query: 688 ATMPDDVLEVSRCFMRDP--VRILVQKKSLP 774
ATMP+ + +++ FM DP V+I V ++ P
Sbjct: 187 ATMPEPIRRITKRFMNDPQEVKIKVNNENAP 217
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 400
L G DV+ AQ+G+GKTA F++ +L QID S + Q L++APTRELA Q+
Sbjct: 39 LLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQV 89
Score = 33.9 bits (74), Expect = 5.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
TF+D+ L E +L+ + GFE PS IQQ I
Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCI 36
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 78.6 bits (185), Expect = 2e-13
Identities = 38/78 (48%), Positives = 49/78 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D+ITR LH + F+LDEADEML GF D + + + Q +L S
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
Query: 688 ATMPDDVLEVSRCFMRDP 741
ATMP V E+ F+R+P
Sbjct: 208 ATMPPMVKEIVERFLRNP 225
Score = 74.1 bits (174), Expect = 4e-12
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +GRD + +AQ+GTGKTA FS+ +L +++ S + QA+++APTRELA Q+ + LG
Sbjct: 60 LLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQ 119
Query: 428 HLNA-KCHACIGGTNVREDIRQLESGVH 508
++ K GG ++ + +R L+SG H
Sbjct: 120 NIKGLKVLEIYGGASILDQMRALKSGAH 147
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 78.6 bits (185), Expect = 2e-13
Identities = 34/96 (35%), Positives = 58/96 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D + R+ L + + +LDEADEML GF D I + + + + Q +L S
Sbjct: 126 VVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQTLLFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
ATMP + ++SR +M DP + + ++ + ++ F
Sbjct: 186 ATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQF 221
Score = 72.1 bits (169), Expect = 2e-11
Identities = 38/87 (43%), Positives = 52/87 (59%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
A+ G DVI QAQ+GTGKTA F I +++++ T R QALIL PTRELA Q+ + L
Sbjct: 39 AILAGGDVIGQAQTGTGKTAAFGIPVVEKVSTG-RHVQALILTPTRELAIQVSGEIQKLS 97
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGV 505
H + GG ++ I+ L+ GV
Sbjct: 98 KHKKIRTLPIYGGQSIVHQIKALKQGV 124
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 78.6 bits (185), Expect = 2e-13
Identities = 34/85 (40%), Positives = 58/85 (68%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++VVGTPGR+ D++ + L + +K+ VLDEADEML+ GF + I + K + Q L
Sbjct: 129 AIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALF 188
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQ 759
SATMP+ + ++++ F++DP+ I ++
Sbjct: 189 SATMPNAIRKLAKTFLKDPLNIQIE 213
Score = 65.3 bits (152), Expect = 2e-09
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
AL +G+DV+ +AQ+GTGKTA F + L +ID S+++ Q L++ PTRELA Q+ + +
Sbjct: 41 ALLEGQDVLGEAQTGTGKTAAFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFA 100
Query: 425 DHLNAKCHACI-GGTNVREDIRQLESG 502
+ A + GG ++ L+ G
Sbjct: 101 AKMRGVGVATVYGGAPFGPQVKALKQG 127
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/96 (37%), Positives = 59/96 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + RR L+A+ + +LDEADEML+ GF++ I + L + Q +L S
Sbjct: 123 IVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+ +L +++ F +P I +++K L + F
Sbjct: 183 ATLAPPILALAKRFQNNPEIIKIERKELTISTVEQF 218
Score = 71.7 bits (168), Expect = 2e-11
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L G+D+ QAQ+GTGKTA F I ++ +D SI + Q+LIL PTRELA Q+ + L
Sbjct: 35 LMTGKDLTGQAQTGTGKTAAFGIPAIEHVDISINQTQSLILCPTRELALQVCTELKKLSK 94
Query: 428 HLNA-KCHACIGGTNVREDIRQLESGVH 508
+ A GG ++ IR L++G H
Sbjct: 95 FKKGLRVLAVYGGESIERQIRDLKAGAH 122
>UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2;
Salinispora|Rep: DEAD/DEAH box helicase-like -
Salinispora arenicola CNS205
Length = 633
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D+ ++ L + ++ VLDEAD ML GF D + + +L D Q +L S
Sbjct: 235 ILVGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQTMLFS 294
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMPD ++ +SR F+R PV I
Sbjct: 295 ATMPDPIVALSRRFLRRPVTI 315
Score = 53.2 bits (122), Expect = 8e-06
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIAL 421
+G D+I QA +GTGKT F + +L+Q+ + QAL++ PTREL Q+ K + A
Sbjct: 146 RGVDLIGQAPTGTGKTLGFGVPLLEQVLAPAEGGDGTPQALVVVPTRELGIQVAKDLQAA 205
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G + GG I L SGV
Sbjct: 206 GSTRGVRVLPIYGGVAYEPQIEALRSGV 233
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 78.2 bits (184), Expect = 2e-13
Identities = 34/85 (40%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
GRD++A+A++GTGK+ + I +L+++D QA+++ PTRELA Q+ ++ I + H+
Sbjct: 118 GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 177
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
AK A GGTN+R+D+ +L+ H
Sbjct: 178 GAKVMATTGGTNLRDDVMRLDDTGH 202
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/81 (32%), Positives = 45/81 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ D+I + + +++ VLDEAD++LS+ F + L + Q++L S
Sbjct: 203 VVIATPGRILDLIKKCLEKVDHVQMVVLDEADKLLSQDFVQIMEAFILTLPKNRQILLYS 262
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P V + ++ P I
Sbjct: 263 ATFPLSVQKFMNSHLQKPYEI 283
>UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10;
Rickettsia|Rep: ATP-dependent RNA helicase RhlE -
Rickettsia conorii
Length = 414
Score = 78.2 bits (184), Expect = 2e-13
Identities = 35/83 (42%), Positives = 55/83 (66%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++GTPGR+ D + R +L + I + VLDE D ML G K+Q+ ++ K L QV++ S
Sbjct: 122 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 181
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP ++ VS+ ++ +PVRI V
Sbjct: 182 ATMPKHIIAVSQKYLNNPVRITV 204
Score = 46.4 bits (105), Expect = 9e-04
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHL 433
G D++A +Q+G+GKT + +L ID+ I+ + ALIL PTRELA QI + +
Sbjct: 40 GSDILASSQTGSGKTLAY---LLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSY 96
Query: 434 NAKCHACIGGTNVREDIRQLE 496
IGG + + QL+
Sbjct: 97 KINSAVLIGGEPMPKQFIQLK 117
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 78.2 bits (184), Expect = 2e-13
Identities = 39/101 (38%), Positives = 62/101 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+I +RAL +++FVLDEAD+ML GF + + K+L + Q + S
Sbjct: 132 ILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFS 191
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
ATMP + E+S F+ DPV + V +S + + F + +N
Sbjct: 192 ATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVN 232
Score = 61.3 bits (142), Expect = 3e-08
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVV 412
L +G+D+ AQ+GTGKTA F++ + + T+ R C+ LIL+PTRELA QI +
Sbjct: 40 LLEGKDLCGIAQTGTGKTAAFALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARAC 99
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESG 502
HL +A GG + +R L+ G
Sbjct: 100 NDYTRHLRMSVNAVFGGVPIGRQMRMLDRG 129
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 78.2 bits (184), Expect = 2e-13
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + + + IK V+DEADEM + GF DQI + K LS +LLS
Sbjct: 125 VVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP + +S +M+DP+ ++++S
Sbjct: 185 ATMPSAIETLSNRYMKDPIHAEIEEES 211
Score = 60.9 bits (141), Expect = 4e-08
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
A+ + +D+I ++Q+G+GKTA F+I I Q +D + QAL+L PTRELA Q+++ + +G
Sbjct: 37 AILEHKDIIVKSQTGSGKTAAFAIPICQLVDWDENKPQALVLVPTRELAIQVKEDMFNIG 96
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGVH 508
K A G ++L+ H
Sbjct: 97 RFKRLKVAAVYGKAPFYHQEKELKQKTH 124
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 78.2 bits (184), Expect = 2e-13
Identities = 35/81 (43%), Positives = 55/81 (67%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D++TRRAL ++ VLDEAD ML GF+ I + + + Q +LLS
Sbjct: 127 IVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT+P + ++++ +MR+P ++
Sbjct: 187 ATVPPTIEKLAQRYMRNPEKV 207
Score = 65.7 bits (153), Expect = 1e-09
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID--TSIRECQALILAPTRELAQQIQKVVIALGD 427
+GRDV+ QA++GTGKTA F I I+++++ + R QALIL PTRELA Q++ + L
Sbjct: 40 EGRDVLGQARTGTGKTAAFGIPIIERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLTH 99
Query: 428 HLNAKCHACIGGTNVREDIRQLESGVH 508
A GG +R + +L+ H
Sbjct: 100 GQRINVVAVYGGKPLRSQMEKLKRAPH 126
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/93 (38%), Positives = 57/93 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D + + L + + VLDEADEML GF D + + + L + QV+L S
Sbjct: 193 VVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFS 252
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVL 786
ATMP ++ +S+ ++ DP + ++ K K++
Sbjct: 253 ATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLI 285
Score = 72.5 bits (170), Expect = 1e-11
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA-LGDHL 433
GRD++ QAQ+GTGKTA F++ +L+++++ + Q L+LAPTRELA Q+ A H
Sbjct: 108 GRDLVGQAQTGTGKTAAFALPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHP 167
Query: 434 NAKCHACIGGTNVREDIRQLESGV 505
+ K A GGT+ R I L GV
Sbjct: 168 HLKVLAVYGGTDFRSQISTLRRGV 191
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 77.8 bits (183), Expect = 3e-13
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +G+DV+ AQ+GTGKTA F++ +L + +RE Q L+LAPTRELAQQ+ V +
Sbjct: 40 LLEGKDVLGLAQTGTGKTAAFTLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSK 99
Query: 428 H-LNAKCHACIGGTNVREDIRQLESGVHW 511
H N K + GG++ R L+ G W
Sbjct: 100 HESNVKVASIYGGSDFGSQFRALKQGPQW 128
Score = 72.5 bits (170), Expect = 1e-11
Identities = 38/86 (44%), Positives = 49/86 (56%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
VVGTPGRV D I R L I+ VLDEADEML GF D + V + Q+ L SA
Sbjct: 129 VVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSA 188
Query: 691 TMPDDVLEVSRCFMRDPVRILVQKKS 768
TMP + V+ +R+P I ++ K+
Sbjct: 189 TMPKQIKAVAEKHLREPTEIRIKSKT 214
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/83 (43%), Positives = 54/83 (65%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+YD I RR L + + LDEADEML+ GF +++ + L D Q +L S
Sbjct: 141 IIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLLFS 200
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT+P D+ ++ R ++ DP IL+
Sbjct: 201 ATVPADIEQIIRDYLTDPETILL 223
Score = 72.9 bits (171), Expect = 9e-12
Identities = 35/85 (41%), Positives = 55/85 (64%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
+ G+DVI ++++GTGKTA F+I IL++I R AL++ PTRELA Q+ + AL
Sbjct: 54 VRDGKDVIVRSKTGTGKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAK 113
Query: 428 HLNAKCHACIGGTNVREDIRQLESG 502
H + A GG ++ E +++LE+G
Sbjct: 114 HRDLSVVAVYGGASMGEQLQKLEAG 138
>UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1;
Picrophilus torridus|Rep: ATP-dependent RNA helicase -
Picrophilus torridus
Length = 387
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/98 (36%), Positives = 60/98 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++GTPGR+ D+I R L+ + +F+LDEAD ML GF D I+ + + L Q +L S
Sbjct: 123 IIIGTPGRIIDLINRDLLNLEHVGMFILDEADMMLDMGFIDDIYKIIENLPEKRQNVLAS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTL 801
ATMP+ + ++ + M DP I V P +++++T+
Sbjct: 183 ATMPERLDDMIKNLMNDPELIAVSNGYTPKTIVHDYTI 220
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRDV+ ++ +G+GKTA F I +Q+ S LI+ PTRELA Q V + + +
Sbjct: 41 GRDVVIKSMTGSGKTAAFLIPAIQRALGSKFFNTVLIILPTRELALQTYSVALNISRNF- 99
Query: 437 AKCHACIGGTNVREDIRQL 493
+ GG+++ + I L
Sbjct: 100 FRTTVVYGGSSMEKQIHDL 118
>UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX59;
n=34; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX59 - Homo sapiens (Human)
Length = 619
Score = 77.8 bits (183), Expect = 3e-13
Identities = 33/89 (37%), Positives = 60/89 (67%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D+I + ++ +K+ V+DEAD ML GF+ Q+ D+ + + D Q IL+S
Sbjct: 325 VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVS 384
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
AT+P + +++ + +PVRI+ +K+LP
Sbjct: 385 ATIPTSIEQLASQLLHNPVRIITGEKNLP 413
Score = 51.2 bits (117), Expect = 3e-05
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
GRD++A A +G+GKTA F + ++ + + ALIL PTRELA QI++ L L
Sbjct: 240 GRDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLP 299
Query: 434 NAKCHACIGGTNVREDIRQLESGV 505
K +GG + + +L+ V
Sbjct: 300 RMKTVLLVGGLPLPPQLYRLQQHV 323
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 77.4 bits (182), Expect = 4e-13
Identities = 34/87 (39%), Positives = 58/87 (66%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR++D+I R A+ + + VLDEADEML GF+D+++ + + +L S
Sbjct: 125 VVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP +V ++ +M+DP+ I+V +++
Sbjct: 185 ATMPREVAAIAANYMKDPLEIIVGRRN 211
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L++ D++ AQ+GTGKTA F I ++Q DT ++ QAL+L PTREL Q+ + +G
Sbjct: 37 LNRQTDLVGLAQTGTGKTAAFGIPLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGR 96
Query: 428 HL-NAKCHACIGGTNVREDIRQLESG 502
++ K GG ++ +L G
Sbjct: 97 YVQKLKIVPVYGGASIVSQTEELRKG 122
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 77.4 bits (182), Expect = 4e-13
Identities = 36/88 (40%), Positives = 54/88 (61%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
S+V GTPGRV+D I+ L I+ VLDEAD ML GF DQ+ + K L + +L
Sbjct: 123 SIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLF 182
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SATMP ++ + + +M +PV I ++ ++
Sbjct: 183 SATMPPEIHNICKRYMNNPVTIEIESQT 210
Score = 56.0 bits (129), Expect = 1e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 442
D+I +++G+GKTA F +SILQ + Q LIL P RELA Q+ + + +L K
Sbjct: 42 DLIVMSKTGSGKTAVFGVSILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHK 101
Query: 443 CHACIGGTNVREDIRQLESGV 505
A G N+ + + L GV
Sbjct: 102 TTAIYGQHNINLETQILNKGV 122
>UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_85,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 957
Score = 77.4 bits (182), Expect = 4e-13
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ ++I ++ N I + +LDEAD ML GF+ Q+ D+ + D Q ILLS
Sbjct: 202 VIVATPGRLIELIDEGMVNLNKITMLILDEADRMLDMGFEPQVRDIVSTIREDRQTILLS 261
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQK 762
AT P++V ++S+ F DP+ + + K
Sbjct: 262 ATWPNEVQQLSKEFCYDPILVKIGK 286
Score = 35.9 bits (79), Expect = 1.2
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQID--TSIREC---QALILAPTRELAQQIQKVVIAL 421
GR+ +A AQ+G+GKT + + L ++ I E + LIL PTREL QI ++ L
Sbjct: 96 GRNALAIAQTGSGKTLAYLLPALVHLEQHAMIMESPQPKLLILVPTRELGVQIYDQLLQL 155
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 77.4 bits (182), Expect = 4e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++GTPGRV D I R L N IK +LDEADEML GF++ I + + + + Q +L S
Sbjct: 126 IIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLLFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT+P ++L++++ + +P + V K L
Sbjct: 186 ATLPQEILQLAQRYQTNPEIVKVTKHEL 213
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 436
+DV QAQ+GTGKTA F I +L+ ID+ QA+IL PTRELA Q+ + + L +L
Sbjct: 42 KDVTGQAQTGTGKTAAFGIPLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPK 101
Query: 437 AKCHACIGGTNVREDIRQLESGV 505
GG + I+ L+ GV
Sbjct: 102 IDVLPVYGGQPIDRQIKALQKGV 124
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 77.4 bits (182), Expect = 4e-13
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++VVGTPGR+ D I R L+ +K F+LDEADEML+ GF + + + D +++L
Sbjct: 125 NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLF 184
Query: 685 SATMPDDVLEVSRCFMRD 738
SATMP ++L +++ +M D
Sbjct: 185 SATMPREILNLAKKYMGD 202
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/84 (33%), Positives = 53/84 (63%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L+ +++AQA++G+GKTA+F+I +++ ++ + +A+IL PTRELA Q+ + +L
Sbjct: 41 LNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKG 99
Query: 428 HLNAKCHACIGGTNVREDIRQLES 499
+ N K GG + I+ L++
Sbjct: 100 NKNLKIAKIYGGKAIYPQIKALKN 123
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 77.0 bits (181), Expect = 5e-13
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ ++ +RALH ++ VLDEAD ML GF++ I ++ Q +L S
Sbjct: 149 VVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQSLLFS 208
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
AT PD + ++R ++DP+ I V+
Sbjct: 209 ATFPDIIRTLAREILKDPIEITVE 232
Score = 67.7 bits (158), Expect = 3e-10
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G DVIAQA +G+GKTA F + +LQ++D ++ QAL+L PTRELA Q+ K + L +
Sbjct: 62 RGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGI 121
Query: 434 -NAKCHACIGGTNVREDIRQLES 499
N K GG + + LE+
Sbjct: 122 PNMKLVVLTGGMPLGPQLASLEA 144
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 77.0 bits (181), Expect = 5e-13
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L QGRDV+ Q TGKT S+S+L D S+++ Q LIL TR+L ++ +++ALG
Sbjct: 56 LIQGRDVVIQNFRSTGKTTVMSLSVLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGK 115
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
LN HAC G ++++DI ++ GV
Sbjct: 116 FLNVSIHACSEGNSIQDDISVVQQGV 141
Score = 71.3 bits (167), Expect = 3e-11
Identities = 32/101 (31%), Positives = 62/101 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTP RV++++ R+ + +K+ +LDEADEML K ++ +FK L Q +L++
Sbjct: 143 IVLGTPDRVFELVQRKEISFAHLKMIILDEADEMLIDESKSLVYCIFKYLPPKPQYVLVT 202
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
AT+ D+L+ F +P+ I+ ++ L + + F +Q++
Sbjct: 203 ATLSQDILDFIEKFFNNPLVIMDKRNELTLEGIQQFFIQVD 243
Score = 48.8 bits (111), Expect = 2e-04
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = +3
Query: 141 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI--KDAML-SLKPSQELEKLLLS 311
+ TF+ M L++ELLRGI A+GF +P +QQRA++P I +D ++ + + + + + LS
Sbjct: 20 IQSTFESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQGRDVVIQNFRSTGKTTVMSLS 79
Query: 312 LYRFYNKSIQ 341
+ ++ S++
Sbjct: 80 VLSIFDLSVK 89
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 76.6 bits (180), Expect = 7e-13
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C + VGTPGR+ +I L TI+LFVLDEAD++L F++Q++ ++ LS + Q++
Sbjct: 85 CHIAVGTPGRIKQLIEYEVLKTGTIRLFVLDEADKLLDDTFQEQVNWIYNHLSDNKQMLA 144
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
LSAT P+ + + +MR+P+ + + K L + + ++L
Sbjct: 145 LSATYPEYLAKHLTKYMREPMFVRLNPKDLALRGIKQLYVEL 186
Score = 69.3 bits (162), Expect = 1e-10
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
+D+I QA+SGTGKT FS+ L+ ID + Q LILAPTRE+A QIQ + A+G +
Sbjct: 4 QDLIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEMEG 63
Query: 440 -KCHACIGGTNVREDIRQLE 496
+ H IGGT D ++L+
Sbjct: 64 LRSHVFIGGTLFGPDRQKLK 83
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 76.6 bits (180), Expect = 7e-13
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D I + L +K V+DEADEML+ GF DQ+ + L +L S
Sbjct: 125 IVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
AT+P+DV +SR +M P I ++
Sbjct: 185 ATLPEDVERLSRTYMNAPTHIEIK 208
Score = 57.2 bits (132), Expect = 5e-07
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
Q +D++ ++Q+G+GKTA+F I + + ++ + QAL+L PTRELA Q+++ + +G
Sbjct: 40 QKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFK 99
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
K A G + +L+ H
Sbjct: 100 RIKAAAIYGKSPFARQKLELKQKTH 124
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 76.6 bits (180), Expect = 7e-13
Identities = 35/84 (41%), Positives = 55/84 (65%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGRV D I R++L+ +++ VLDEADEML GF D + + + A+ Q L S
Sbjct: 166 VIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFS 225
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
ATMPD + V+ ++R+P + ++
Sbjct: 226 ATMPDAIRRVAHRYLREPREVKIK 249
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G D++ +AQ+GTGKTA F++ +L ++D +++ Q L+LAPTRELA Q+ + +L
Sbjct: 81 GHDLLGEAQTGTGKTAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLP 140
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
GG ++ +RQL G H
Sbjct: 141 GFHVLPVYGGQSMVVQLRQLARGAH 165
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 76.6 bits (180), Expect = 7e-13
Identities = 36/88 (40%), Positives = 54/88 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D+I R AL + ++ FVLDE D ML FK+ I ++ L + QV +S
Sbjct: 91 VVIGTPGRIKDLIERGALKTDDVRYFVLDEVDVMLDMNFKEDIDFIYSQLPEEKQVFFVS 150
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P +V E+S + + P I V+ + L
Sbjct: 151 ATFPKEVRELSHRYTKKPEFIKVESREL 178
Score = 66.9 bits (156), Expect = 6e-10
Identities = 38/83 (45%), Positives = 49/83 (59%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QGRD + QA++GTGKTA F + IL + + ALILAPTRELA QI+ +L
Sbjct: 8 QGRDCLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRDFARYL 64
Query: 434 NAKCHACIGGTNVREDIRQLESG 502
N + A GGT V D++ L G
Sbjct: 65 NVRTFAFYGGTKVFGDLKVLRGG 87
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 76.6 bits (180), Expect = 7e-13
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D+I + AL + +++ VLDEADEML GF + + + D L S
Sbjct: 167 VVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALFS 226
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP + +V+R ++DPV++ V +S
Sbjct: 227 ATMPAAIEKVAREHLKDPVKVAVSTES 253
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 412
RDV+ AQ+GTGKTA F + +L +D R QAL+LAPTRELA Q + +
Sbjct: 83 RDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVLAPTRELAMQSAQAI 133
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 76.6 bits (180), Expect = 7e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
+VGTPGRV D I ++ L + +K FVLDEADEML GF D I + + + Q+ L SA
Sbjct: 135 IVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFSA 194
Query: 691 TMPDDVLEVSRCFMRDPVRILVQKKS 768
TMP+ + ++++ F+ P I ++ K+
Sbjct: 195 TMPNVIKKIAKQFLNQPKIIKIKTKT 220
Score = 63.7 bits (148), Expect = 5e-09
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +D+I QAQ+GTGKTA F + +L +I+ +I Q LILAPTRELA Q+ + V
Sbjct: 46 LLNNKDIIGQAQTGTGKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYAR 105
Query: 428 HLNA-KCHACIGGTNVREDIRQLESGVH 508
+ GG + +R L+ GVH
Sbjct: 106 GMKGFHVLPIYGGQSYDIQLRPLKRGVH 133
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 76.6 bits (180), Expect = 7e-13
Identities = 36/99 (36%), Positives = 64/99 (64%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
+VGTPGRV ++ +L I+ FVLDEAD ++++ FK I ++++ L++ VQ+I+ SA
Sbjct: 132 IVGTPGRVLHLLQIGSLAITKIRTFVLDEADILMNKNFKIDIFNIYRYLNSKVQIIICSA 191
Query: 691 TMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
T+P L+ + F+ DPV IL++K+ + + F + +
Sbjct: 192 TIPLYTLQAASKFLLDPVMILMRKEEINIDKIKQFYISV 230
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/87 (41%), Positives = 49/87 (56%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +GRD+I Q+ SGTGKT + I Q+ SI Q LIL PTREL+ QI+ V L
Sbjct: 44 LLKGRDIIYQSPSGTGKTTCYIIGTSNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNI 103
Query: 428 HLNAKCHACIGGTNVREDIRQLESGVH 508
+ +C GG + ED++ L+ H
Sbjct: 104 YTKNSITSCHGGRWLGEDLKNLKKNFH 130
>UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;
n=6; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 41 - Arabidopsis thaliana (Mouse-ear cress)
Length = 505
Score = 76.6 bits (180), Expect = 7e-13
Identities = 37/103 (35%), Positives = 63/103 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L++GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L S
Sbjct: 239 LIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFS 297
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*K 816
AT+ +V +V ++ + + + + P K +N + ++ K
Sbjct: 298 ATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAK 340
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVV 412
G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 147 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESGV 505
LG L K +GG + + +++ GV
Sbjct: 207 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 237
>UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor
4A-2; n=5; Oryza sativa|Rep: Putative eukaryotic
initiation factor 4A-2 - Oryza sativa subsp. japonica
(Rice)
Length = 416
Score = 76.6 bits (180), Expect = 7e-13
Identities = 40/85 (47%), Positives = 54/85 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ VGTP V M+ RAL + I++FVLDEADE+L RGFKDQIH + + L Q S
Sbjct: 167 VAVGTPCHVLGMLQGRALCPDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKTQFGFFS 225
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQK 762
A+M + LE+ R +M PV I+V +
Sbjct: 226 ASMSHEALEMCRKYMNKPVEIIVPR 250
Score = 76.2 bits (179), Expect = 9e-13
Identities = 40/86 (46%), Positives = 53/86 (61%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L G D+I Q+ GT T T ILQ++D + ECQAL+L PT +LA + Q V+ LG
Sbjct: 82 LCNGLDIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQ 139
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
L+AK HA GGT+ ED + L +GV
Sbjct: 140 FLSAKAHAFCGGTSAHEDQQILSTGV 165
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 76.2 bits (179), Expect = 9e-13
Identities = 34/77 (44%), Positives = 53/77 (68%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D + R+ L + ++ +LDEADEML GFK++I +F+ +S DVQ+ L S
Sbjct: 122 IVVGTPGRVNDHLNRKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSPDVQIGLFS 181
Query: 688 ATMPDDVLEVSRCFMRD 738
AT V++++ +M +
Sbjct: 182 ATTSPKVMQIANDYMNE 198
Score = 67.7 bits (158), Expect = 3e-10
Identities = 32/82 (39%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G+++ ++ +GTGKTA+F + IL++I+ + R QA+I+APTRELA QI + G +
Sbjct: 37 EGKNIFGKSSTGTGKTASFVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRI 96
Query: 434 -NAKCHACIGGTNVREDIRQLE 496
N IGG ++R+ I++L+
Sbjct: 97 ENLVIAPLIGGADMRDQIKRLK 118
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 76.2 bits (179), Expect = 9e-13
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + +++L +++K+ VLDEAD ML GF D I DV +D Q +L S
Sbjct: 126 IVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVR 747
AT P ++ ++S R P R
Sbjct: 186 ATYPQEIEQISARVQRQPQR 205
Score = 58.4 bits (135), Expect = 2e-07
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
A+ G DV A+A++G+GKTA F I +L +I S QAL+L PTRELA Q+ K + L
Sbjct: 37 AVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLA 96
Query: 425 DHL-NAKCHACIGGTNVREDIRQLESGVH 508
N K GG + + QL+S VH
Sbjct: 97 RFAQNIKILTLCGGQPMGQ---QLDSLVH 122
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 76.2 bits (179), Expect = 9e-13
Identities = 37/101 (36%), Positives = 55/101 (54%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D + R + + +K VLDEADEML GF I + + Q L S
Sbjct: 124 IIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
AT+PD+V E+ FM+ P IL++ + + Q+N
Sbjct: 184 ATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVN 224
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D++ QAQ+GTGKTA+F I IL ++ QAL+L PTRELA Q+ + + +L +
Sbjct: 41 GLDLMGQAQTGTGKTASFGIPILNRVIKG-EGLQALVLCPTRELAVQVTEEISSLSRRMR 99
Query: 437 AKCHACIGGTNVREDIRQL 493
+ A GG ++ +R L
Sbjct: 100 IQVLAIYGGQSIELQLRSL 118
>UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Maricaulis maris (strain MCS10)
Length = 787
Score = 76.2 bits (179), Expect = 9e-13
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C +VVGTPGR+ D I R AL + +K VLDEADEML GF++ + + A + +L
Sbjct: 125 CHIVVGTPGRLRDHIERGALDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASRRTLL 184
Query: 682 LSATMPDDVLEVSRCFMRDPVRI 750
SAT+P + +++R F +D +RI
Sbjct: 185 FSATVPRAIADIARRFQKDALRI 207
Score = 60.9 bits (141), Expect = 4e-08
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQIQKVVI 415
+GRD++ AQ+G+GKTA F +++ + + D ALI+APTRELA Q+Q+ +
Sbjct: 36 EGRDLLVSAQTGSGKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELA 95
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
L + +C+GG + R + + LE G H
Sbjct: 96 WLYGEARGQIASCVGGMDPRAERKALERGCH 126
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 75.8 bits (178), Expect = 1e-12
Identities = 34/87 (39%), Positives = 54/87 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D I + L N +K F+LDEADEML GF + + + + L Q+ L S
Sbjct: 128 VVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFS 187
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP + +++ ++ DP I ++ ++
Sbjct: 188 ATMPYRIRQIANTYLNDPASIEIRMET 214
Score = 71.7 bits (168), Expect = 2e-11
Identities = 40/84 (47%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH- 430
QGRD IA AQ+GTGKTA F++ ILQ + I QALILAPTRELA Q+ + L +
Sbjct: 42 QGRDAIALAQTGTGKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQ 101
Query: 431 LNAKCHACIGGTNVREDIRQLESG 502
N GG ++QL SG
Sbjct: 102 RNVTIAVLCGGQEYGRQLKQLRSG 125
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 75.8 bits (178), Expect = 1e-12
Identities = 35/87 (40%), Positives = 53/87 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGRV D + R +L + + VLDEADEML GF D + V D Q + S
Sbjct: 131 VIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVFFS 190
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT+PD++ + ++ DP+RI ++ K+
Sbjct: 191 ATLPDEISRIVNHYLVDPLRIAIETKT 217
Score = 75.4 bits (177), Expect = 2e-12
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
AL +GRDV+ QAQ+GTGKTA F++ +L ++D RE Q L+LAPTRELAQQ+ + G
Sbjct: 42 ALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYG 101
Query: 425 DHLNA-KCHACIGGTNVREDIRQLESG 502
+ + + GG RE + L G
Sbjct: 102 RGVKGLEVLSLCGGQEYREQLSGLRRG 128
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/88 (37%), Positives = 54/88 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + R L + ++ VLDEAD ML GF D + ++ K + + L S
Sbjct: 141 IVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFS 200
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
ATMP ++++++R FM++ + + K L
Sbjct: 201 ATMPKEIVDIARKFMKEYIHVSTVKDEL 228
Score = 67.7 bits (158), Expect = 3e-10
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIAL 421
AL +D+IAQAQ+GTGKTA F I +L++ID + +A+I+ PTRELA QI + + +L
Sbjct: 52 ALSTDKDLIAQAQTGTGKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSL 111
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
K GG ++ + + LE GV
Sbjct: 112 KGTKRVKITTLYGGQSLEKQFKDLEKGV 139
Score = 33.5 bits (73), Expect = 6.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 248
E F+D L EE+L I G+EKP+ I Q+ ++P
Sbjct: 18 ERFEDFGLSEEILLAIQKKGYEKPTEI-QKIVLP 50
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 75.8 bits (178), Expect = 1e-12
Identities = 34/86 (39%), Positives = 55/86 (63%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++VGTPGR D+I R L+ + + FVLDEADEML GF + I + +L + Q L
Sbjct: 121 NIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQSFLF 180
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQK 762
SAT+P +++E+++ FM + + + K
Sbjct: 181 SATIPSEIIELAKGFMHNEEILFLSK 206
Score = 54.4 bits (125), Expect = 3e-06
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D++ ++++G+GKTA + I I+ + +ALIL PTRELA Q+ KV ALG
Sbjct: 39 GSDLVVRSKTGSGKTAAYLIPIINNTAKE-KGIRALILLPTRELAVQVAKVSEALGKRSG 97
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ GG ++ + I + G +
Sbjct: 98 IRTVVVYGGVSINKQIELILRGAN 121
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 75.8 bits (178), Expect = 1e-12
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G DV+ +AQ+GTGKTA F+I +L+ ++ R QALI+ PTREL Q+ + + +G ++
Sbjct: 41 GMDVVGEAQTGTGKTAAFAIPVLENLEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMK 99
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
K A GG ++ I QL GVH
Sbjct: 100 VKVLAVYGGQSIGNQIAQLRRGVH 123
Score = 70.1 bits (164), Expect = 6e-11
Identities = 36/89 (40%), Positives = 52/89 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D I R + I VLDEADEML+ GF D I + + Q +L S
Sbjct: 124 VIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
AT+ +L ++R +MR+P + V+KK P
Sbjct: 184 ATVSKPILRIARKYMRNPQVMRVEKKHSP 212
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 75.4 bits (177), Expect = 2e-12
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQALILAPTRELAQQIQKVVIALGDH 430
G+DVI QA++GTGKTA FSI IL+Q+D+ R+ QA+++ PTRELA Q+ L
Sbjct: 81 GKDVIGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARG 140
Query: 431 LNAKCHACIGGTNVREDIRQLESG 502
+ + GG N+ +RQLE+G
Sbjct: 141 VPTEIAVLSGGKNMNRQLRQLENG 164
Score = 74.5 bits (175), Expect = 3e-12
Identities = 37/81 (45%), Positives = 50/81 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
LVVGTPGRV+D + R L N + VLDEAD ML GF+ QI + + + Q +LLS
Sbjct: 167 LVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLLS 226
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT+P V ++ +M +PV I
Sbjct: 227 ATLPPVVRRLAESYMHEPVVI 247
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 75.4 bits (177), Expect = 2e-12
Identities = 33/75 (44%), Positives = 50/75 (66%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGT GRV D I R +L + ++ F+LDEADEML+ GF + I +F + D +V++ S
Sbjct: 168 IIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFS 227
Query: 688 ATMPDDVLEVSRCFM 732
ATMP +L ++ FM
Sbjct: 228 ATMPRQILSIASTFM 242
Score = 66.1 bits (154), Expect = 1e-09
Identities = 30/80 (37%), Positives = 49/80 (61%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 442
++IA+A++GTGKTA F + ++Q++ + AL+L PTRELA Q+ + +L +
Sbjct: 86 NIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPR 145
Query: 443 CHACIGGTNVREDIRQLESG 502
H GG ++ E +R LE G
Sbjct: 146 IHTVYGGVSIAEQLRNLEQG 165
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 75.4 bits (177), Expect = 2e-12
Identities = 33/86 (38%), Positives = 54/86 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++GTPGR+ D + R+ ++ + + VLDEAD+ML GF + D+ + Q + S
Sbjct: 124 IIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKK 765
ATMP+ V ++ +M+DPV+I VQ K
Sbjct: 184 ATMPNQVRTLAEQYMKDPVQIQVQSK 209
Score = 69.3 bits (162), Expect = 1e-10
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
RDV+AQAQ+GTGKT F + IL++++ QALI+ PTRELA QI L +
Sbjct: 41 RDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALIITPTRELAIQITAETKKLAEVKGI 100
Query: 440 KCHACIGGTNVREDIRQLESGVH 508
A GG +V + +R+L+ +H
Sbjct: 101 NILAAYGGQDVEQQLRKLKGSIH 123
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 75.4 bits (177), Expect = 2e-12
Identities = 36/87 (41%), Positives = 52/87 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ DMI RR + + I +LDEADEML+ GF + I ++ + L S
Sbjct: 125 IIVATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNTWLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP +V + + FM DP+ I V K+
Sbjct: 185 ATMPAEVARIGKQFMTDPIEITVGAKN 211
Score = 62.9 bits (146), Expect = 9e-09
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L + D++A AQ+GTGKTA F ++Q+ID + R QALIL+PTREL QI +
Sbjct: 37 LEKDIDLVALAQTGTGKTAAFGFPVIQKIDANNRNTQALILSPTRELCLQITNELKNYSK 96
Query: 428 H-LNAKCHACIGGTNVREDIRQLESG 502
+ A GG ++ E R ++ G
Sbjct: 97 YEKGINVVAVYGGASITEQARDIKRG 122
Score = 34.3 bits (75), Expect = 3.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+ + L E LLR I GFE P+ +Q++AI
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAI 33
>UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocystis
pacifica SIR-1|Rep: DEAD/DEAH box helicase -
Plesiocystis pacifica SIR-1
Length = 1390
Score = 75.4 bits (177), Expect = 2e-12
Identities = 36/82 (43%), Positives = 52/82 (63%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
VVGTPGRV D I R++L + ++ VLDE DEMLS GF + I + + + Q L SA
Sbjct: 282 VVGTPGRVLDHIRRKSLDLSKVRTVVLDECDEMLSMGFLEDIRAILRACPKERQTCLFSA 341
Query: 691 TMPDDVLEVSRCFMRDPVRILV 756
T+P D+ ++R MR+P I++
Sbjct: 342 TVPRDIARIARRDMREPEHIVL 363
Score = 52.4 bits (120), Expect = 1e-05
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISIL----QQIDTSIRECQALILAPTRELAQQIQKVVIAL 421
QG DV+ Q+Q+G+GKT F + L Q D + Q ++L PTRELA+Q+ ++ L
Sbjct: 192 QGTDVLVQSQTGSGKTGAFCLPWLANRFQPGDAAETGVQLIVLLPTRELAKQVCNELVRL 251
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGVH 508
GGT + + L GVH
Sbjct: 252 AIETPVDVLPVYGGTAMNPQLDALARGVH 280
>UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 598
Score = 75.4 bits (177), Expect = 2e-12
Identities = 36/89 (40%), Positives = 53/89 (59%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
SLVV TPGR+ D I N + VLDEAD+ML GF+ QI + +S D Q ++
Sbjct: 250 SLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQTMMF 309
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKSL 771
SAT P ++ +++ F+ DPV +++ K L
Sbjct: 310 SATWPKEIQQLAADFLVDPVHMIIGNKDL 338
Score = 44.8 bits (101), Expect = 0.003
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIA 418
+G D+I A++G+GKTA F I + I + L+L+PTRELAQQI +V
Sbjct: 161 KGHDLIGIAKTGSGKTAAFLIPAMVHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKG 220
Query: 419 LGDHLNAKCHACIGGTN---VREDIRQLES 499
D+L + GG D+R L S
Sbjct: 221 FCDNLMIRQTCLFGGAGRGPQANDLRHLPS 250
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 75.4 bits (177), Expect = 2e-12
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS--ADVQVIL 681
+VVGTPGRV MI L + IKLFV+DEADEML GF++Q+ +F+ ++ +VQ+ +
Sbjct: 159 IVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQIAM 218
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
SAT ++ L VS + +PV I ++ K + + + L
Sbjct: 219 FSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDL 260
Score = 61.3 bits (142), Expect = 3e-08
Identities = 36/84 (42%), Positives = 46/84 (54%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD+ AQAQSGTGKT F+++ LQ D S Q L+LA TRE+A Q LG +
Sbjct: 75 GRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMG 134
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
A+ GG+ + D LE H
Sbjct: 135 ARVALLSGGSPIAADKVALEKKPH 158
Score = 49.6 bits (113), Expect = 9e-05
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +3
Query: 123 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
D+ ++ +T++D LKE+LL+GIY+ GFE PS IQ+ AI P I
Sbjct: 30 DSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPII 73
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 74.9 bits (176), Expect = 2e-12
Identities = 31/81 (38%), Positives = 58/81 (71%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D++ +A++ + +++ VLDEAD+ML+ GFK+++ ++FK+L Q +L S
Sbjct: 135 ILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQKRQNLLFS 194
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT+ DV ++ + DPV+I
Sbjct: 195 ATLGKDVDTITEFLLHDPVKI 215
Score = 59.3 bits (137), Expect = 1e-07
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVV 412
A+ +G+D++ AQ+G+GKTA+F + ILQ + T R AL+L PTRELA Q+ +V
Sbjct: 42 AILKGKDILGIAQTGSGKTASFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVF 101
Query: 413 IALGDHL--NAKCHACIGGTNVREDIRQLE 496
A + L K A GG ++ + QL+
Sbjct: 102 QAFSNALPNKIKSLAVYGGVSINPQMIQLQ 131
>UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;
n=1; uncultured marine bacterium 66A03|Rep: Putative
cold-shock dead-box protein A - uncultured marine
bacterium 66A03
Length = 659
Score = 74.5 bits (175), Expect = 3e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D I R L + IK VLDEADEML GF++ + + + + +L S
Sbjct: 127 IVVGTPGRLRDHIERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKK 765
AT+P ++++++ + +D VRI V K
Sbjct: 187 ATVPTQIVKLAKTYQKDSVRISVSSK 212
Score = 59.7 bits (138), Expect = 9e-08
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALG 424
D++ AQ+G+GKT F ISI + E A+I+APTRELA Q++K + L
Sbjct: 39 DLLVSAQTGSGKTLAFGISIATTLLAEKMEFDRPKIPLAIIIAPTRELALQVRKELEWLY 98
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGVH 508
A+ +C+GG + R + R LESG H
Sbjct: 99 VRTKAQFASCVGGMDPRAERRTLESGAH 126
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 74.5 bits (175), Expect = 3e-12
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L+ ++V+ AQ+GTGKTA F + +LQQI+ S+++ Q L+L PTREL QQ+ K +
Sbjct: 36 LNSTKNVVGVAQTGTGKTAAFGLPVLQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSR 95
Query: 428 HL-NAKCHACIGGTNVREDIRQLESGVH 508
++ A GG + E I++LE+ H
Sbjct: 96 YIVRIHTEAVYGGKKIEEQIKKLETPKH 123
Score = 59.3 bits (137), Expect = 1e-07
Identities = 25/75 (33%), Positives = 48/75 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+I R+A++ + +K +LDEADEML+ GF I + K+ + +L +
Sbjct: 124 ILVATPGRLLDLIARKAVNLSNLKYLILDEADEMLNMGFLPDIDKIMKIAKPTARKLLFT 183
Query: 688 ATMPDDVLEVSRCFM 732
+T+ ++ + R ++
Sbjct: 184 STLGSELKLIIREYL 198
>UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella frigidimarina (strain NCIMB
400)
Length = 421
Score = 74.5 bits (175), Expect = 3e-12
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ +RAL + + V DEAD ML GFKD+I +V K L + Q +L S
Sbjct: 136 ILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVEVLKRLPSTRQTLLFS 195
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT+ D +L SR +R P I V +++
Sbjct: 196 ATLDDRMLSFSRRLLRSPQVIEVAQRN 222
Score = 58.0 bits (134), Expect = 3e-07
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI-----------DT---SIRECQALILAPTRELAQ 394
G+DV+A AQ+GTGKTA F++ +L Q+ DT + AL+L PTRELAQ
Sbjct: 38 GKDVMAGAQTGTGKTAAFALPLLHQLLTHQDNLAAQPDTQHINSTPITALVLVPTRELAQ 97
Query: 395 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
Q+ + + GG ++ E IRQL +G H
Sbjct: 98 QVHSSIEQYAYGSSVTSVMVYGGVSIGEQIRQLANGTH 135
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 74.5 bits (175), Expect = 3e-12
Identities = 37/87 (42%), Positives = 51/87 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D + + +L + IK VLDEADEML GF D + + + Q L S
Sbjct: 129 VVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFS 188
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP + ++ ++RDP I V K+
Sbjct: 189 ATMPSAIKRIATTYLRDPDLITVAAKT 215
Score = 62.9 bits (146), Expect = 9e-09
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L RDV+ QAQ+GTGKTA+F++ IL +ID QAL+LAPTRELA Q+ +
Sbjct: 41 LLNNRDVLGQAQTGTGKTASFALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYAT 100
Query: 428 HL-NAKCHACIGGTNVREDIRQLESGVH 508
++ GG + + L GVH
Sbjct: 101 YIPGFHVLPIYGGQSYGAQLSALRRGVH 128
>UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 654
Score = 74.5 bits (175), Expect = 3e-12
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C +V+GTPGR+ D + R+ L + +K VLDEADEML+ GF D + + K S DVQ +L
Sbjct: 213 CDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELILKS-SGDVQTLL 271
Query: 682 LSATMPDDVLEVSRCFMR 735
SAT+P V ++++ F++
Sbjct: 272 FSATLPPWVKDIAKRFLK 289
Score = 43.6 bits (98), Expect = 0.006
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQID-----------TSIRECQALILAPTRELAQQIQ 403
G+DV+ +A++G GKT F + I++++ R ++LAPTRELA+Q+
Sbjct: 120 GKDVVGRARTGCGKTLAFVLPIVEEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVF 179
Query: 404 KVVIALGDHLNAKCHACIGGTNVREDIRQLESG 502
+G+ K GGT RE L G
Sbjct: 180 ADFDWIGNSFGFKSVCVYGGTPYREQEMGLRGG 212
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 74.1 bits (174), Expect = 4e-12
Identities = 36/101 (35%), Positives = 56/101 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ L +++ VLDEAD ML GF + I + L Q + S
Sbjct: 142 VLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFS 201
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
ATMP D+ E++ +RDP R+ V S + +N LQ++
Sbjct: 202 ATMPKDIAELADSMLRDPARVAVTPVSSTAERINQRILQVD 242
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIAL 421
GRDV+ AQ+GTGKTA+F++ IL + I + + L+L+PTREL+ QI A
Sbjct: 53 GRDVVGIAQTGTGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAY 112
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G H+ IGG + +R L GV
Sbjct: 113 GRHIRLSSTLAIGGVPMGRQVRSLMQGV 140
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 74.1 bits (174), Expect = 4e-12
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + R + + +K VLDEAD+ML GF D+I V + L Q +L S
Sbjct: 169 IVVGTPGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQTVLFS 228
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
AT P+ + +SR + R +++++
Sbjct: 229 ATFPESIEHLSRKYQRHAQQVIIE 252
Score = 70.5 bits (165), Expect = 5e-11
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G+D+I QA++G+GKTA FS+ IL +I+ QALIL PTRELA Q+ + LG L
Sbjct: 84 GKDIIGQAKTGSGKTAAFSLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLP 143
Query: 434 NAKCHACIGGTNVREDIRQLESGV 505
K A GG + RE LE+GV
Sbjct: 144 GLKVLAMTGGQSGREQADALENGV 167
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 74.1 bits (174), Expect = 4e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGT GRV D I + L + ++ VLDEADEML GF D + V +S + Q +L S
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFS 190
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT+P D+ ++ ++R+P +I V+ K+
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKT 217
Score = 66.9 bits (156), Expect = 6e-10
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDH 430
GRDV+ QAQ+GTGKTA F++ ++ +D + R+ Q L+LAPTRELA Q+ + A +
Sbjct: 44 GRDVLGQAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKN 103
Query: 431 LNAKCHACI-GGTNVREDIRQLESGV 505
+ ACI GG IR L+ GV
Sbjct: 104 VPNLDVACIYGGQEYGSQIRALKQGV 129
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 74.1 bits (174), Expect = 4e-12
Identities = 33/86 (38%), Positives = 52/86 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGRV D + +R + +KL VLDEAD ML GF+D + +F VQ +L S
Sbjct: 126 IIVGTPGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKK 765
AT + + V++ ++ +PV V+ +
Sbjct: 186 ATFTEQIERVAKQYLHNPVTCKVESQ 211
Score = 63.7 bits (148), Expect = 5e-09
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDH 430
QG+DVI QAQ+G+GKT F I L++I+ + QA++L PTRELA+Q+ Q+ A D
Sbjct: 40 QGKDVIGQAQTGSGKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDI 99
Query: 431 LNAKCHACIGGTNVREDIRQLESGVH 508
N K GG + I+ L+ H
Sbjct: 100 GNIKVTTLCGGQPMGPQIQSLKHSPH 125
>UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=3;
Paramecium tetraurelia|Rep: Nucleolar RNA helicase II,
putative - Paramecium tetraurelia
Length = 664
Score = 74.1 bits (174), Expect = 4e-12
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVI 678
C +VVGTPGR+ D++ R+ L + I++ VLDEAD+ML+ GF++ I + + +Q++
Sbjct: 149 CEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNERKIQML 208
Query: 679 LLSATMPDDVLEVSRCFM 732
L SAT+PD V E+S +M
Sbjct: 209 LFSATIPDWVKELSHKYM 226
Score = 46.8 bits (106), Expect = 7e-04
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ---ALILAPTRELAQQI-QKVV 412
++ G D+I Q ++G+GKT + + IL++I +++ + L+L PTRELA Q+ +
Sbjct: 59 IYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKNPYVLVLLPTRELAIQVTTEFN 118
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESG 502
L + ++ GGT++R I Q+ G
Sbjct: 119 TILHKENEYRIYSIYGGTDLRNQIDQVRQG 148
>UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;
n=7; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 24 - Arabidopsis thaliana (Mouse-ear cress)
Length = 760
Score = 74.1 bits (174), Expect = 4e-12
Identities = 35/85 (41%), Positives = 50/85 (58%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C +VV TPGR+ DM+ +AL VLDEAD M GF+ Q+ + + D Q +L
Sbjct: 352 CEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLL 411
Query: 682 LSATMPDDVLEVSRCFMRDPVRILV 756
SATMP V +++R + DP+R+ V
Sbjct: 412 FSATMPWKVEKLAREILSDPIRVTV 436
Score = 45.2 bits (102), Expect = 0.002
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIAL 421
GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
+ A GG + E ++L++G
Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKAG 351
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 73.7 bits (173), Expect = 5e-12
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D+I + +L + +K VLDEADEMLS GF D I + D Q +L S
Sbjct: 176 VVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFS 235
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT+ V+ ++ ++ P I + K +
Sbjct: 236 ATLSSRVMSIANRYLHSPESISISPKQM 263
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/82 (41%), Positives = 46/82 (56%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+I QAQ+GTGKTA F + +L ID S + QAL+LAPTRELAQQ+ +
Sbjct: 92 GSDLIGQAQTGTGKTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSGDDG 151
Query: 437 AKCHACIGGTNVREDIRQLESG 502
GG++ + + L G
Sbjct: 152 RNVLVVYGGSSYQAQVGGLRRG 173
Score = 33.5 bits (73), Expect = 6.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+F D NLK +L+ + GF +P+ IQ++AI
Sbjct: 56 SFTDFNLKSDLVANLVKLGFSQPTPIQEKAI 86
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 73.7 bits (173), Expect = 5e-12
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG-DHL 433
G+DV+ +AQ+GTGKTA F + L +IDTSI++ Q ++LAPTRELA Q+ + + + G D
Sbjct: 52 GKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMK 111
Query: 434 NAKCHACIGGTNVREDIRQLESG 502
+ GG + +QLE G
Sbjct: 112 GLRVATLYGGQSYGPQFQQLERG 134
Score = 72.9 bits (171), Expect = 9e-12
Identities = 34/83 (40%), Positives = 54/83 (65%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + R++L + +++ VLDEADEML+ GF + I + + Q+ L S
Sbjct: 137 VVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFS 196
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP + +++ F++DP I V
Sbjct: 197 ATMPPAIRKIANRFLKDPEHIKV 219
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 73.7 bits (173), Expect = 5e-12
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L + RD++A AQ+GTGKTA F +LQ ID S + Q LI+APTREL QI +
Sbjct: 36 LAEDRDMVALAQTGTGKTAAFGFPLLQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAK 95
Query: 428 HL-NAKCHACIGGTNVREDIRQLESG 502
H+ + A GG+N++E R++ G
Sbjct: 96 HIKGVRVVAVYGGSNIQEQAREISRG 121
Score = 73.3 bits (172), Expect = 7e-12
Identities = 37/87 (42%), Positives = 52/87 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ DM+ RR + + VLDEADEML+ GF + I ++ D L S
Sbjct: 124 IVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP +V +++ FM DP+ I V K+
Sbjct: 184 ATMPREVARIAKEFMHDPLEITVGHKN 210
Score = 33.9 bits (74), Expect = 5.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
TFD + L LL+ I GFE PS IQ+ AI
Sbjct: 2 TFDQLGLNAPLLQAIADMGFETPSKIQEEAI 32
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 73.7 bits (173), Expect = 5e-12
Identities = 33/87 (37%), Positives = 59/87 (67%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
+ QG++++ Q+Q+G+GKTATFSI L ++ + + + +I++PTRELA Q + + +LG
Sbjct: 54 ISQGKNIMFQSQNGSGKTATFSIGTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLG- 112
Query: 428 HLNAKCHACIGGTNVREDIRQLESGVH 508
A AC+GG ++ D++ L+ G+H
Sbjct: 113 ---ANTRACVGGNSLGADVKALQKGIH 136
Score = 60.9 bits (141), Expect = 4e-08
Identities = 32/99 (32%), Positives = 58/99 (58%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
V GTPGR+ ++ + A ++ VLDEADEML+ FK I D+ + L Q ++++A
Sbjct: 138 VSGTPGRILQLLKEHNIQAEKVQSVVLDEADEMLT-SFKSTIMDILQKL-PHAQKVIVTA 195
Query: 691 TMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
T+ DV+E++ +R+ V I V + L ++ + +++
Sbjct: 196 TVSADVVELATAHLRNSVEIRVPRDELTLTGIDQYVVRV 234
Score = 39.9 bits (89), Expect = 0.076
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 138 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+V T++ M LK EL+ I G+EKPS IQQRAI
Sbjct: 17 EVYPTWESMKLKPELIEAIKKNGWEKPSPIQQRAI 51
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 73.7 bits (173), Expect = 5e-12
Identities = 37/85 (43%), Positives = 54/85 (63%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QG+D++ A++G+GKTA F+I ILQ + T+ + AL+LAPTRELA QI++ ALG +
Sbjct: 134 QGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSM 193
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ IGG ++ E R L H
Sbjct: 194 GLRSVCIIGGMSMMEQARDLMRKPH 218
>UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep:
LOC562123 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 483
Score = 73.3 bits (172), Expect = 7e-12
Identities = 31/89 (34%), Positives = 57/89 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ +++ ++A+ + ++ V+DEAD ML GF+ Q+ D+ + + D Q +L S
Sbjct: 296 IVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPDDHQTLLTS 355
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
AT+P +++ DPV I + +K+ P
Sbjct: 356 ATIPTGTQQLAERLTHDPVTITIGQKNQP 384
Score = 47.2 bits (107), Expect = 5e-04
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQ---QIDTSIRECQA-LILAPTRELAQQIQKVVIALG 424
GRDVIA A +G+GKT F + ++ Q +++ C A LIL PTRELA QI++ L
Sbjct: 207 GRDVIATADTGSGKTVAFLLPVVMRALQSESASPSCPACLILTPTRELAIQIEEQAKELM 266
Query: 425 DHL-NAKCHACIGGTNVREDIRQLESGV 505
L N +GG + + +L+ +
Sbjct: 267 RGLPNMGTALLVGGMPLPPQLHRLKHNI 294
>UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Deinococcus|Rep: DEAD/DEAH box helicase-like protein -
Deinococcus geothermalis (strain DSM 11300)
Length = 591
Score = 72.9 bits (171), Expect = 9e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + R L + I+ VLDEADEMLS GF D I + + A Q +L S
Sbjct: 127 VVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFS 186
Query: 688 ATMPDDVLEVSRCFMRDPV 744
AT+ D++ ++R ++R+PV
Sbjct: 187 ATLNDEIHRLARKYLREPV 205
Score = 44.4 bits (100), Expect = 0.004
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 8/68 (11%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDT----SIRE----CQALILAPTRELAQQIQKVV 412
G+D+I +A++GTGKT F++ I+Q + RE +A+++APTRELA+Q+ +
Sbjct: 37 GKDLIGRARTGTGKTLAFALPIIQNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEEF 96
Query: 413 IALGDHLN 436
G L+
Sbjct: 97 SKSGPQLS 104
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 72.9 bits (171), Expect = 9e-12
Identities = 33/94 (35%), Positives = 59/94 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+ + + + +++FVLDEAD ML GF + V K+L A Q + S
Sbjct: 125 ILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQTLFFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLN 789
ATMP +V+++ +++PV++ V S P ++++
Sbjct: 185 ATMPPEVMDLVNGLLKNPVKVAVDPVSSPVEIID 218
Score = 68.5 bits (160), Expect = 2e-10
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIALGD 427
GRDV+ AQ+GTGKT F+ ILQ++ I R ++LIL PTRELA QIQ+ A G
Sbjct: 38 GRDVLGCAQTGTGKTCAFAAPILQRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGK 97
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
HL + GG + + +L+ GV
Sbjct: 98 HLPLRSAVIFGGVGQQPQVDKLKKGV 123
Score = 36.7 bits (81), Expect = 0.70
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
TF ++ L + +L+ + G+EKPS IQ++AI P +
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPPAL 36
>UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1;
Salinibacter ruber DSM 13855|Rep: ATP-dependent RNA
helicase - Salinibacter ruber (strain DSM 13855)
Length = 478
Score = 72.5 bits (170), Expect = 1e-11
Identities = 35/78 (44%), Positives = 50/78 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D I + A+T+++ VLDEADEMLS GF + D+ + + D + S
Sbjct: 166 VVIGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYS 225
Query: 688 ATMPDDVLEVSRCFMRDP 741
ATMP V V+R F+ DP
Sbjct: 226 ATMPPKVRSVAREFLDDP 243
Score = 53.2 bits (122), Expect = 8e-06
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQK 406
GRD+I Q+Q+G+GKT F + + ++ E Q LIL PTRELA+QI +
Sbjct: 78 GRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHE 127
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 72.5 bits (170), Expect = 1e-11
Identities = 41/85 (48%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 251 HQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 430
H G D I AQ+GTGKTA F + +L ID + RE QALILAPTRELAQQI + + H
Sbjct: 50 HDG-DFIGLAQTGTGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKH 108
Query: 431 L-NAKCHACIGGTNVREDIRQLESG 502
L GG N+ IR + G
Sbjct: 109 LGKLNVVPVFGGANIMNQIRDIRRG 133
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/100 (33%), Positives = 57/100 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ RR + + +K VLDEADEML+ GFK+ I + + L S
Sbjct: 136 IIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIWLFS 195
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
ATM ++ + +M P + + K++ K + + ++QL
Sbjct: 196 ATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQL 235
>UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2;
Frankia|Rep: DEAD/DEAH box helicase-like - Frankia sp.
(strain CcI3)
Length = 649
Score = 72.1 bits (169), Expect = 2e-11
Identities = 34/85 (40%), Positives = 50/85 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D+ + L + VLDEADEML GF + + L + Q +L S
Sbjct: 210 IVVGTPGRLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQTMLFS 269
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQK 762
ATMP V+ ++R FM+ PV + ++
Sbjct: 270 ATMPGPVISLARRFMKRPVHVRAEQ 294
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDH 430
D+I QA++GTGKT F + ++Q + + + QAL++ PTREL Q+ V G
Sbjct: 124 DIIGQARTGTGKTLAFGVPVVQTVLAAKEGADGRPQALVVVPTRELCVQVTADVTRAGAR 183
Query: 431 LNAKCHACIGGTNVREDIRQLESGV 505
+ + GG + L +GV
Sbjct: 184 RGLRVLSVYGGRAYEPQLSALRAGV 208
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 72.1 bits (169), Expect = 2e-11
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGRV D + R L + +K VLDEADEML GF + I + + D Q L S
Sbjct: 127 VIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
ATMP + ++ + +DPV+I ++
Sbjct: 187 ATMPHQIKRITDQYQKDPVKIEIK 210
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L G DV+ AQ+GTGKTA FS+ +L +IDT+ + QAL+L PTRELA Q+ +
Sbjct: 39 LLDGNDVLGLAQTGTGKTAAFSLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYAR 98
Query: 428 HL-NAKCHACIGGTNVREDIRQLE 496
+ N GG ++R +R L+
Sbjct: 99 GVDNFHVLPIYGGADMRNQLRALK 122
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 72.1 bits (169), Expect = 2e-11
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILL 684
+V+ TPGR+ D+I R A+ + +K +LDEADEMLS GFK ++ + K + +D + L
Sbjct: 126 IVIATPGRLIDLIERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKSDRKTWLF 185
Query: 685 SATMPDDVLEVSRCFM-RDPVRILVQKKSL 771
SATMPD++ + + +M + RI + K +L
Sbjct: 186 SATMPDEIKRIVKTYMDANAPRIEINKNTL 215
Score = 63.3 bits (147), Expect = 7e-09
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 442
D I AQ+GTGKTA F + +L ID + QALIL+PTREL QQI+K + +++ +
Sbjct: 42 DFIGLAQTGTGKTAAFGLPVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDR 101
Query: 443 --CHACIGGTNVREDIRQLESGVH 508
A GG + + L+ H
Sbjct: 102 IFLEAVFGGEKIDRQMNNLKRTTH 125
>UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4;
Wolbachia|Rep: Superfamily II DNA/RNA helicase -
Wolbachia sp. subsp. Brugia malayi (strain TRS)
Length = 408
Score = 71.7 bits (168), Expect = 2e-11
Identities = 32/87 (36%), Positives = 51/87 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D I R+ L N + VLDE D M GF QI + K L Q ++ S
Sbjct: 124 IVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLPKMRQNLMFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT+P D+++++ + P R+ V+ ++
Sbjct: 184 ATLPGDIVKLAEKYSNQPERVSVENEA 210
Score = 53.2 bits (122), Expect = 8e-06
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDH 430
+G+D++ AQ+GTGKT F+I ++ ++ AL++ PTRELAQQ+ ++ L +
Sbjct: 38 KGKDILGSAQTGTGKTLAFAIPLIAKLLGEPNASTALVIVPTRELAQQVTNEIGKLLLKN 97
Query: 431 LNAKCHACIGGTNVREDIRQLE 496
K IGG + + QL+
Sbjct: 98 SVLKIALLIGGEPIFRQLNQLQ 119
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 71.7 bits (168), Expect = 2e-11
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHL 433
GRDVI AQ+GTGKTA F + ILQ++ R +A+I+ PTRELA+QIQ V+ ALG +
Sbjct: 38 GRDVIGIAQTGTGKTAAFVLPILQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYT 97
Query: 434 NAKCHACIGGTNVREDIRQLESGV 505
+ GG + I++L GV
Sbjct: 98 GLRSVTLYGGVGYQGQIQRLRRGV 121
Score = 60.1 bits (139), Expect = 7e-08
Identities = 28/87 (32%), Positives = 48/87 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ V PGR+ D + R L + + +LDEAD+M GF + + ++ A Q +L S
Sbjct: 123 IAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTMLFS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMPD + ++R +R+P I + + +
Sbjct: 183 ATMPDAIRALAREALREPQTIQIGRSA 209
>UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2;
Ostreococcus|Rep: ATP-dependent RNA helicase -
Ostreococcus tauri
Length = 683
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/76 (43%), Positives = 51/76 (67%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D++ RRAL + I+ VLDEAD+ML+ GF++ + + A Q L S
Sbjct: 152 IVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGRQTFLFS 211
Query: 688 ATMPDDVLEVSRCFMR 735
ATMP V ++++ F++
Sbjct: 212 ATMPQWVKQITKKFLK 227
Score = 54.4 bits (125), Expect = 3e-06
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVV 412
G+DV+ +A++GTGKT FS+ +++++ R + ++LAPTRELA+Q++ +
Sbjct: 62 GQDVVGRARTGTGKTLAFSLPVIEKLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEI 121
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESGV 505
L+ C GGT + + +L GV
Sbjct: 122 FITAPTLDTAC--VYGGTPIGQQESKLRRGV 150
>UniRef50_Q7QA96 Cluster: ENSANGP00000013118; n=5; Eumetazoa|Rep:
ENSANGP00000013118 - Anopheles gambiae str. PEST
Length = 512
Score = 71.7 bits (168), Expect = 2e-11
Identities = 30/83 (36%), Positives = 51/83 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D++ + +TI +LDEAD ML GF+ QI V + D Q ++ S
Sbjct: 232 ILIATPGRLNDLVQEGVVDVSTITYLILDEADRMLDMGFEPQIRKVLLDVRPDRQTVMTS 291
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT PD V +++ +M DP+++ +
Sbjct: 292 ATWPDGVRRLAQSYMHDPIQVYI 314
Score = 46.0 bits (104), Expect = 0.001
Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR-ECQALILAPTRELAQQIQKV 409
L +G D+I AQ+GTGKT F + L Q I R L+LAPTRELA QI+K
Sbjct: 140 LLRGEDLIGIAQTGTGKTLAFLLPALIHIEGQPIPRGERGGPNVLVLAPTRELALQIEKE 199
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
V A K GG + R I + +GV
Sbjct: 200 V-AKYQFRGIKAVCLYGGGDRRAQINVVRNGV 230
>UniRef50_Q54CD6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 697
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ +MI + +++ + VLDEAD+MLS+G Q+ + + D Q IL S
Sbjct: 345 ILISTPGRLIEMIENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQIRPDSQNILFS 404
Query: 688 ATMPDDVLEVSRCFMRDP-VRILVQKKSLP 774
AT PD + EVS+ +++DP +R+ + LP
Sbjct: 405 ATFPDSLKEVSKDWIKDPSIRLRIGSSELP 434
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/84 (39%), Positives = 50/84 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + R L + + VLDEADEML GF + + + + Q L S
Sbjct: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
ATMP+ + ++R FM++P + +Q
Sbjct: 188 ATMPEAIRRITRRFMKEPQEVRIQ 211
Score = 68.9 bits (161), Expect = 1e-10
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L GRDV+ AQ+G+GKTA FS+ +LQ +D ++ Q L+LAPTRELA Q+ + +
Sbjct: 40 LLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSK 99
Query: 428 HL-NAKCHACIGGTNVREDIRQLESG 502
H+ A GG +R L G
Sbjct: 100 HMRGVNVVALYGGQRYDVQLRALRQG 125
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 71.3 bits (167), Expect = 3e-11
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L + DV+A AQ+GTGKTA F + +LQQID R Q+LIL PTREL QI +
Sbjct: 37 LGENNDVVALAQTGTGKTAAFGLPLLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSK 96
Query: 428 HLNA-KCHACIGGTNVREDIRQLESGVH 508
+++ K GG+++ IR L+ GVH
Sbjct: 97 YIDGLKVLPVYGGSSIDSQIRSLKRGVH 124
Score = 67.3 bits (157), Expect = 4e-10
Identities = 28/87 (32%), Positives = 55/87 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ R+ + +T+ V+DEADEML+ GF D I+ + + + +L S
Sbjct: 125 IIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNTLLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATM ++ +S+ ++++ I + +K+
Sbjct: 185 ATMSPEIARISKNYLQNAKEITIGRKN 211
>UniRef50_Q4AEL1 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=1; Chlorobium phaeobacteroides
BS1|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium phaeobacteroides BS1
Length = 356
Score = 71.3 bits (167), Expect = 3e-11
Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ R L + +K VLDEADEM++ GFK +I ++ K + +L +
Sbjct: 23 VVVATPGRLIDLLNRGVLSLDDLKYLVLDEADEMINMGFKAEIDEILKSCKPAITKLLFT 82
Query: 688 ATMPDDV-LEVSRCFMRDPVRILVQKKSLPWKVLNNFTL 801
ATMP DV L + + D I + K+ L + + ++ L
Sbjct: 83 ATMPKDVKLLIEEYLVADASEIRINKEELVNEKIQHYLL 121
>UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4;
Bacteria|Rep: ATP-dependent RNA helicase protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 413
Score = 71.3 bits (167), Expect = 3e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR++D+I ++ + +K+ VLDEAD ML GF I DV K L A Q + S
Sbjct: 126 ILVATPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPARHQTLFFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKK 765
AT+ +++ +++ +++P+RI + K
Sbjct: 186 ATINEEIKKLAYSLVKNPIRIQIAPK 211
Score = 54.8 bits (126), Expect = 2e-06
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALG 424
G DV+A AQ+GTGKTA F I +L + + + L++APTRELA QI +V +G
Sbjct: 38 GEDVLAIAQTGTGKTAAFVIPVLNTLINVKKSEHTDISCLVMAPTRELAVQISEVFKKIG 97
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGV 505
+ + GG I + G+
Sbjct: 98 AYTRLRTVCITGGVEQEAQIAAADYGI 124
>UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Cystobacterineae|Rep: DEAD/DEAH box helicase domain
protein - Anaeromyxobacter sp. Fw109-5
Length = 455
Score = 71.3 bits (167), Expect = 3e-11
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ D + + + I+ VLDEAD ML GFK Q+ + + L Q +L S
Sbjct: 124 IVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLPKQRQTLLFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQK 762
ATM +V + +R +RDPVR+ V +
Sbjct: 184 ATMAGEVADFARAHLRDPVRVEVAR 208
Score = 51.2 bits (117), Expect = 3e-05
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G+DVI A +GTGKTA F + ++ ++ +AL+LAPTRELA QI + + G
Sbjct: 41 GKDVIGTAATGTGKTAAFLLPLIDRL-AGKPGTRALVLAPTRELALQIGEELERFGHARR 99
Query: 437 AKCHACIGGTNVREDIRQL 493
+ IGG + + L
Sbjct: 100 VRGAVIIGGVGMAQQAEAL 118
>UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent
RNA helicase; n=4; Bacteroidetes|Rep: RhlE-like DEAD box
family ATP-dependent RNA helicase - Gramella forsetii
(strain KT0803)
Length = 455
Score = 71.3 bits (167), Expect = 3e-11
Identities = 35/89 (39%), Positives = 55/89 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TP R+YD++ RRA+ +I+ FV+DE D ML GFK Q++++ ++L + Q I+ S
Sbjct: 131 IVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQSIMFS 190
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
ATM + V E+ + P +I V P
Sbjct: 191 ATMTETVEEMIDTNFKAPEKISVAVSGTP 219
Score = 56.0 bits (129), Expect = 1e-06
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +2
Query: 242 NALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC-QALILAPTRELAQQIQKVVIA 418
+++ GRDV+ AQ+GTGKT + + +L+ + S ++ + LI+ PTREL Q+ + +
Sbjct: 41 SSIMSGRDVVGIAQTGTGKTFAYLLPLLRMLKYSEQKNPRILIMVPTRELVVQVVEEIEK 100
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
L ++N + GG N+ + L G+
Sbjct: 101 LAKYINLRVAGVYGGVNINTQHQDLMQGL 129
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 70.9 bits (166), Expect = 4e-11
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QG+D+IAQAQ+GTGKTA F+I IL ++ + ++ +ALI+ PTRELA QI + ++ LG
Sbjct: 81 QGKDLIAQAQTGTGKTAAFAIPILNTLNRN-KDIEALIITPTRELAMQISEEILKLGRFG 139
Query: 434 NAKCHACIGGTNVREDIRQLE 496
K GG +++ LE
Sbjct: 140 RIKTICMYGGQSIKRQCDLLE 160
Score = 61.7 bits (143), Expect = 2e-08
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
++ TPGR+ D + + + ++ VLDE+DEML GF D I ++FK L Q +L SA
Sbjct: 166 MIATPGRLLDHLQNGRIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFSA 225
Query: 691 TMPDDVLEVSRCFMRDPVRILV 756
TMP+ + ++ + +P + +
Sbjct: 226 TMPEPIKALAMKILNEPAFVKI 247
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 70.9 bits (166), Expect = 4e-11
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L+ D++A A++GTGKTA F + +LQ ID + QA+ILAPTREL QQI +I+ +
Sbjct: 38 LNDKEDIVALAKTGTGKTAAFGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAE 97
Query: 428 HLNAKCHACI-GGTNVREDIRQLESGVH 508
H + A + GG ++ I +L+ H
Sbjct: 98 HTSQVSIATLCGGIPIKPQIERLKEATH 125
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/79 (31%), Positives = 47/79 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ R A+ +I F+LDEADEM++ K+ + + K + + L +
Sbjct: 126 IIVATPGRLADLVKREAIDIKSISYFILDEADEMVT-ALKEGLDSIIKEIPKARRTFLFT 184
Query: 688 ATMPDDVLEVSRCFMRDPV 744
AT+P + ++ + +M V
Sbjct: 185 ATLPGTLKQLIQNYMAPKV 203
>UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein;
n=31; Actinobacteria (class)|Rep: DEAD/DEAH box helicase
domain protein - Mycobacterium sp. (strain KMS)
Length = 507
Score = 70.9 bits (166), Expect = 4e-11
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D+ + L + + VLDEADEML GF I + + Q +L S
Sbjct: 141 VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTRQAMLFS 200
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMPD ++ ++R FM P I
Sbjct: 201 ATMPDPIITLARTFMNQPTHI 221
Score = 44.0 bits (99), Expect = 0.005
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE-----CQALILAPTRELAQQIQKVVIAL 421
G D+I QA++G GKT F + +LQ++ T + +ALI+ PTREL Q+ +
Sbjct: 47 GDDLIGQARTGMGKTYAFGVPLLQRVTTDTEKELSGIPRALIVVPTRELCLQVHSDLSLA 106
Query: 422 GDHLNA 439
+L A
Sbjct: 107 AKYLTA 112
>UniRef50_Q54T87 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 586
Score = 70.9 bits (166), Expect = 4e-11
Identities = 32/88 (36%), Positives = 55/88 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D++ + H ++++ VLDEAD ML GF QI + + + Q ++ S
Sbjct: 237 IVIGTPGRLNDLLRKH--HLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFS 294
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P +V ++ F++DP++I V + L
Sbjct: 295 ATWPKEVKLLASKFLKDPIKITVGSQEL 322
Score = 39.9 bits (89), Expect = 0.076
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIA 418
G D++ A +G+GKT F + L +I + + L++APTRELAQQI++V
Sbjct: 147 GNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKT 206
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
+ + GG + R L +GV
Sbjct: 207 SIRGTSIRQLCAYGGLGKIDQSRILRNGV 235
>UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3;
n=13; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 748
Score = 70.9 bits (166), Expect = 4e-11
Identities = 33/81 (40%), Positives = 54/81 (66%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D+I R+L ++ VLDEAD+ML+ GF++ + + + L Q +L S
Sbjct: 231 VVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFS 290
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP V +++R ++ +P+ I
Sbjct: 291 ATMPTWVKKLARKYLDNPLNI 311
Score = 54.0 bits (124), Expect = 4e-06
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 10/74 (13%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQIQ 403
QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q++
Sbjct: 138 QGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVE 197
Query: 404 KVVIALGDHLNAKC 445
K + +L+ C
Sbjct: 198 KEIKESAPYLSTVC 211
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 70.9 bits (166), Expect = 4e-11
Identities = 34/87 (39%), Positives = 50/87 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + R L + + VLDEADEML+ GF D + + QV L S
Sbjct: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFS 194
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP + ++S ++ DP + + K+
Sbjct: 195 ATMPPAIRKLSAKYLHDPFEVTCKAKT 221
Score = 61.7 bits (143), Expect = 2e-08
Identities = 31/64 (48%), Positives = 43/64 (67%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
AL G DV+ AQ+GTGKTA F+I +L +ID + + QAL+L PTRELA Q+ + G
Sbjct: 46 ALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYG 105
Query: 425 DHLN 436
+L+
Sbjct: 106 AYLS 109
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 70.5 bits (165), Expect = 5e-11
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH- 430
+ +DVI Q+ +G+GKT + + I Q+IDTS RE QA+ILAPT ELA QI K + L +
Sbjct: 39 ENKDVIGQSPTGSGKTLAYLLPIFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGNS 98
Query: 431 -LNAKCHACIGGTNVREDIRQLESGVH 508
++ IG NV+ I +L+ H
Sbjct: 99 KVSVTSTPIIGNANVKRQIEKLKEKPH 125
Score = 60.1 bits (139), Expect = 7e-08
Identities = 27/77 (35%), Positives = 48/77 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VG+ GR+ ++I ++ + A+TIK V+DE D++L I DV K D Q+++ S
Sbjct: 126 VIVGSSGRILELIKKKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTTMRDRQLMVFS 185
Query: 688 ATMPDDVLEVSRCFMRD 738
AT+ + L V++ M+D
Sbjct: 186 ATINEKTLNVAKGLMKD 202
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 70.5 bits (165), Expect = 5e-11
Identities = 34/104 (32%), Positives = 60/104 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGRV DM R + N+ K+ LDEAD ML GF I + + +++ Q +L S
Sbjct: 125 IIVGTPGRVMDMNERGHIDLNSPKMLCLDEADRMLDMGFFPDIMWIVERMTSRQQTLLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KN 819
AT P ++++ + FM +P +L + L ++ +++++ N
Sbjct: 185 ATFPQEIIDAAHEFMNEPDFVLTNAEELDIPPIDLYSVRIGRSN 228
Score = 64.9 bits (151), Expect = 2e-09
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QG DVI QA++G+GKTA F + IL++ S + QAL+LAPTRELA Q+ + L +
Sbjct: 41 QGTDVIGQARTGSGKTAAFGLPILERCQPS-GKLQALVLAPTRELANQVAQEFELLQGNA 99
Query: 434 NAKCHACIGGTNVREDIRQLESGV 505
GGT++ + + L GV
Sbjct: 100 GLSIVTVYGGTDLEKQAKTLAKGV 123
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 70.5 bits (165), Expect = 5e-11
Identities = 33/86 (38%), Positives = 52/86 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ AL N + VLDEAD MLS GF D+++ V + L A Q +L S
Sbjct: 138 VLVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYS 197
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKK 765
AT P++V ++ + P+ +Q +
Sbjct: 198 ATFPEEVRALTAKLLHQPLEYHLQSE 223
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 8/94 (8%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 406
A+ GRDV+A A +G+GKTA F++ +LQ++ + S + + L+L PTRELAQQ+
Sbjct: 42 AVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVAD 101
Query: 407 VVIALGDHLNA--KCHACIGGTNVREDIRQLESG 502
++ H N K A GG +V ++ L +G
Sbjct: 102 SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAG 135
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 70.5 bits (165), Expect = 5e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ + + +L + ++ VLDEAD ML GF+D+I + + Q +L S
Sbjct: 126 IVVGTPGRILKHLNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQTLLFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P + +++ M+DP+RI
Sbjct: 186 ATYPKKIATIAKRVMKDPLRI 206
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
A+ G+D+IAQA++GTGKTA F + +L ++ Q LIL PTREL +Q+ K + L
Sbjct: 37 AILDGKDLIAQAKTGTGKTAAFGLGVLSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLA 96
Query: 425 DHL-NAKCHACIGGTNVREDIRQLESGVH 508
+ N K + GG R ++ + G H
Sbjct: 97 RMMPNIKLLSLGGGMPFRPQMKSVAHGAH 125
>UniRef50_A2WLP5 Cluster: Putative uncharacterized protein; n=3;
Magnoliophyta|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 523
Score = 70.5 bits (165), Expect = 5e-11
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ DMI + I VLDEAD ML GF+ QI + + D Q + S
Sbjct: 193 IVIATPGRLIDMIESHHTNLRRITYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 252
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P +V +++R F+ DP ++++ + L
Sbjct: 253 ATWPKEVEQLARNFLFDPYKVIIGSEEL 280
Score = 38.3 bits (85), Expect = 0.23
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIA 418
+GRD+I A++G+GKT + + + ++ L+LAPTRELA QIQ+
Sbjct: 129 RGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATK 188
Query: 419 LG 424
G
Sbjct: 189 FG 190
>UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacteroidales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 427
Score = 70.1 bits (164), Expect = 6e-11
Identities = 30/95 (31%), Positives = 53/95 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ + + + + FVLDEAD ML GF D I ++K L + Q ++ S
Sbjct: 128 IVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSCQTVMFS 187
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNN 792
ATMP + +++ +RDP+ + + P ++ +
Sbjct: 188 ATMPPKIRKLAASILRDPIEVEIAISRPPESIMQS 222
Score = 57.6 bits (133), Expect = 4e-07
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALG 424
+GRDVIA AQ+GTGKTA + + IL ++ + + A+I+APTRELAQQI + V
Sbjct: 37 EGRDVIACAQTGTGKTAAYLLPILDRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFS 96
Query: 425 DHLNAKCHACIGGTN 469
+ A GGT+
Sbjct: 97 YFMPVSAVAIYGGTD 111
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 70.1 bits (164), Expect = 6e-11
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 442
D I A +GTGKTA F I +++ ID+++++ QAL+L+PTRELA Q+ + + LG +
Sbjct: 84 DFIGLASTGTGKTAAFGIPLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGKKKGVR 143
Query: 443 CHACIGGTNVREDIRQLESGVH 508
GG + R I ++ G H
Sbjct: 144 VVTIYGGASYRTQIDGIKRGAH 165
Score = 59.3 bits (137), Expect = 1e-07
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD------- 666
+VV TPGR+ D + ++ + ++K VLDEADEMLS GFK+ + + D
Sbjct: 166 IVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSVRA 225
Query: 667 -VQVILLSATMPDDVLEVSRCFMRDPVRILVQK 762
+ L SATM +V ++ ++ +P + V K
Sbjct: 226 ACRTWLFSATMSSEVRRLTSTYLENPETVSVNK 258
>UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=11; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 678
Score = 70.1 bits (164), Expect = 6e-11
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D R L ++ V+DEAD ML GF I +FKM Q + S
Sbjct: 126 VLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP ++ +++ F++DPVRI
Sbjct: 186 ATMPPEITRLTKQFLKDPVRI 206
Score = 52.8 bits (121), Expect = 1e-05
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
G+DV+ AQ+GTGKTA F++ ++ ++ R +AL++APTRELA Q+
Sbjct: 39 GQDVLGIAQTGTGKTAAFTLPLIDKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAK 98
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
IGG + + ++L+ GV
Sbjct: 99 GTKLSWALLIGGVSFGDQEKKLDRGV 124
>UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila
melanogaster|Rep: LD33749p - Drosophila melanogaster
(Fruit fly)
Length = 703
Score = 70.1 bits (164), Expect = 6e-11
Identities = 32/83 (38%), Positives = 51/83 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D+I + +TI VLDEAD ML GF+ QI V + D Q I+ S
Sbjct: 409 IIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTS 468
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT P V +++ +M++P+++ V
Sbjct: 469 ATWPPGVRRLAQSYMKNPIQVCV 491
Score = 43.2 bits (97), Expect = 0.008
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSI--SILQQIDTSIR----ECQALILAPTRELAQQIQKV 409
L QG D+I AQ+GTGKT F + I + ++ R L+LAPTRELA QI+ +
Sbjct: 317 LLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANVLVLAPTRELALQIE-M 375
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESG 502
+ K GG N I LE G
Sbjct: 376 EVKKYSFRGMKAVCVYGGGNRNMQISDLERG 406
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 69.7 bits (163), Expect = 8e-11
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+I +A+SGTGKTA F I L+ ID I Q +ILAPTRE+A QI++V+ +LG +
Sbjct: 61 GFDLIVRAKSGTGKTAVFGIIALEMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIK 120
Query: 437 A-KCHACIGGTNVREDIRQLES 499
K + IGG + D ++L +
Sbjct: 121 GLKVESFIGGVAMDIDRKKLSN 142
Score = 62.9 bits (146), Expect = 9e-09
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C + +G PGRV +I + L + ++LFVLDEAD+++ F+ I+ ++ L + QVI
Sbjct: 143 CHIAIGAPGRVKHLIDKGYLKMDHVRLFVLDEADKLMEESFQKDINYIYAKLPPNRQVIS 202
Query: 682 LSATMPDDVLEVSRCFMRDPV 744
SAT P D+ +M+ P+
Sbjct: 203 SSATYPGDLEIFLESYMQSPI 223
Score = 34.3 bits (75), Expect = 3.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
TF M L +++L G+ GF KPS IQ ++I
Sbjct: 25 TFSQMGLSQQVLNGLLNCGFHKPSPIQHKSI 55
>UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_03001730;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001730 - Ferroplasma acidarmanus fer1
Length = 430
Score = 69.7 bits (163), Expect = 8e-11
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D+ ++ L + +K VLDEAD ML GF D I + Q ILLS
Sbjct: 117 IVIGTPGRILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGRQTILLS 176
Query: 688 ATMPDDVLEVSRCFMRDP 741
AT+P +V ++ FM +P
Sbjct: 177 ATLPAEVKTIANHFMNNP 194
Score = 53.2 bits (122), Expect = 8e-06
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDT-SIRECQALILAPTRELAQQIQKVVIALGDHL 433
G+DVI ++++G+GKTA + + +L ++ + +A+I+ PTRELA Q +V LG
Sbjct: 33 GKDVIIRSKTGSGKTAAYLLPVLNSVEKLKGKSVKAIIILPTRELALQTHRVASRLGKIS 92
Query: 434 NAKCHACIGGTNVREDIRQL 493
K GG ++ + +L
Sbjct: 93 GIKSTIVYGGASIIRQVEEL 112
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 69.7 bits (163), Expect = 8e-11
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 100 GLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKME 159
Query: 437 A-KCHACIGGTNVREDIRQLE 496
+CH IGGT + +D +L+
Sbjct: 160 GLECHVFIGGTPLSQDKTRLK 180
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVI 678
C + VG+PGR+ +I L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++
Sbjct: 182 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 241
Query: 679 LLSATMPDDVLEVSRCFMRDP 741
+SAT P+ + +MRDP
Sbjct: 242 AVSATYPEVLANALTRYMRDP 262
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 69.7 bits (163), Expect = 8e-11
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D I R+ A IK+ +LDEADEML GF D I + L+ Q +L S
Sbjct: 122 VIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFS 181
Query: 688 ATMPDDVLEVSRCFM--RDPVRILVQKKSLP 774
AT+P + + + F+ V+++ ++K++P
Sbjct: 182 ATLPAPIKTIIKKFLGGYKTVKLVGREKTVP 212
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G +++ QA +GTGKTA + + +LQ+I ++ Q LI+ PTRELA Q+ V LG +L
Sbjct: 38 EGHNLVGQAPTGTGKTAAYLLPVLQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGKYL 96
Query: 434 NAKCHACIGGTNVREDIRQLESGV 505
+ A GG + IR L GV
Sbjct: 97 KVRALAVYGGQAIERQIRGLRQGV 120
>UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3;
Rhodospirillales|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 731
Score = 69.7 bits (163), Expect = 8e-11
Identities = 31/91 (34%), Positives = 57/91 (62%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C +VVGTPGR+ D + R L+ + ++ VLDEADEML GF+D++ ++ A+ + +L
Sbjct: 168 CHIVVGTPGRLCDHLGRGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERRTLL 227
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
SAT+ ++ +++ + + +RI ++ P
Sbjct: 228 FSATIAREIAALAKRYQTNALRIDTVSRNKP 258
Score = 60.5 bits (140), Expect = 5e-08
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQA---LILAPTRELAQQIQKVVIAL 421
RD++ AQ+G+GKT + +++ + D + + A LI+APTRELA Q+Q+ ++ L
Sbjct: 81 RDLLVSAQTGSGKTVAYGLALADTLLGADERLGQAGAPLALIVAPTRELAMQVQQELLWL 140
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGVH 508
A+ +CIGG + R + + LE G H
Sbjct: 141 YGPAGARVVSCIGGMDARREAQALERGCH 169
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 69.7 bits (163), Expect = 8e-11
Identities = 33/87 (37%), Positives = 50/87 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D+ + AL I V DEAD M GF I + KML Q +L S
Sbjct: 127 IVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLLFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT P +V+ + ++DP+RI +++++
Sbjct: 187 ATYPSEVMSLCNSMLKDPLRIQIEEQN 213
Score = 63.3 bits (147), Expect = 7e-09
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKV 409
A+ QG+D++A A++GTGKTA F++ IL+++ + R + + L+L PTRELA Q+ +
Sbjct: 34 AIMQGKDILAGARTGTGKTAAFALPILEKLSSKERNKKRPQTRVLVLVPTRELANQVTQN 93
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+ + L K GG + I+ L+SG+
Sbjct: 94 IKSYAKKLPFKTLPVFGGVSSYPQIQALKSGI 125
>UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein;
n=22; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain ANA-3)
Length = 491
Score = 69.7 bits (163), Expect = 8e-11
Identities = 34/91 (37%), Positives = 54/91 (59%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E L+V TPGR+ DM T+RA+ + + + VLDEAD ML GF + I+ + + L Q
Sbjct: 122 EGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQN 181
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKS 768
+L SAT+ V +++ + D + I + +KS
Sbjct: 182 LLFSATLSKQVKALAKSAIPDAIEIEISRKS 212
Score = 54.0 bits (124), Expect = 4e-06
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTS--IR--ECQALILAPTRELAQQIQKVVIALG 424
G++V+A AQ+GTGKTA+F + +L + + IR +A+IL PTRELA Q+++ +
Sbjct: 38 GKNVLAAAQTGTGKTASFVLPLLHRFADAPKIRPKRVRAIILTPTRELALQVEENINQYA 97
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGV 505
+L A GG + ++L GV
Sbjct: 98 KYLPLTAMAMYGGVDAAPQKKRLIEGV 124
>UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 630
Score = 69.7 bits (163), Expect = 8e-11
Identities = 32/83 (38%), Positives = 50/83 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ DM+T++ ++ + VLDEAD ML GF+D+I +F A Q +L S
Sbjct: 325 IVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFS 384
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP + ++ + P+ + V
Sbjct: 385 ATMPRKIQFFAKSALVKPIVVNV 407
Score = 48.8 bits (111), Expect = 2e-04
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQIQKVV 412
GRD+I A +G+GKT TF + ++ Q++ + LI+ P+RELA+QI ++
Sbjct: 227 GRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLI 286
Query: 413 IALGDHL------NAKCHACIGGTNVREDIRQLESGVH 508
I + D L + CIGG + E + + G+H
Sbjct: 287 IEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIH 324
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 69.7 bits (163), Expect = 8e-11
Identities = 35/85 (41%), Positives = 49/85 (57%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G D++ A++GTGKT F+I ILQ++ ALIL PTRELA QI + ALG +
Sbjct: 125 EGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPI 184
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
KC +GG ++ R+L H
Sbjct: 185 TLKCSVIVGGRSLIHQARELSERPH 209
Score = 55.2 bits (127), Expect = 2e-06
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRR----ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
+VV TPGR+ D+I A I+ FVLDEAD ML + DQ+ +F+ +S Q
Sbjct: 210 VVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQT 269
Query: 676 ILLSATMPDDVLEVSRCFMRDP 741
+LLSAT+ +++ + R R P
Sbjct: 270 LLLSATITNNINMLHRVSTRKP 291
>UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55;
Eukaryota|Rep: Spliceosome RNA helicase BAT1 - Homo
sapiens (Human)
Length = 428
Score = 69.7 bits (163), Expect = 8e-11
Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILL 684
+VVGTPGR+ + ++L+ IK F+LDE D+ML + + + ++F+M + QV++
Sbjct: 168 IVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 227
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ ++ V R FM+DP+ I V ++
Sbjct: 228 SATLSKEIRPVCRKFMQDPMEIFVDDET 255
Score = 56.8 bits (131), Expect = 6e-07
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G DV+ QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++
Sbjct: 82 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 141
Query: 434 NAKCHACIGGTNVRED 481
N K GG ++++D
Sbjct: 142 NVKVAVFFGGLSIKKD 157
Score = 33.1 bits (72), Expect = 8.7
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 47 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 83
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 69.7 bits (163), Expect = 8e-11
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 99 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 158
Query: 437 A-KCHACIGGTNVREDIRQLE 496
+CH IGGT + +D +L+
Sbjct: 159 GLECHVFIGGTPLSQDKTRLK 179
Score = 69.7 bits (163), Expect = 8e-11
Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVI 678
C + VG+PGR+ +I L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++
Sbjct: 181 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 240
Query: 679 LLSATMPDDVLEVSRCFMRDP--VRILVQKKSL-----PWKVLNNFTL 801
+SAT P+ + +MRDP VR+ SL +KV+N++ L
Sbjct: 241 AVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPL 288
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 69.3 bits (162), Expect = 1e-10
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKV 409
L QGRDV+A AQ+GTGKTA + + ++Q + +T+ + +ALILAPTRELAQQ+
Sbjct: 37 LLQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQSREETAPKHPRALILAPTRELAQQVFDN 96
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+ H GGT++R QL GV
Sbjct: 97 LKQYAQHTELAIVTVYGGTSIRVQQEQLAKGV 128
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D + + N +++ VLDEAD ML GF I + K + + Q +L S
Sbjct: 130 ILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLLFS 189
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT V ++ M++PV + V
Sbjct: 190 ATFETRVKALAYRLMKEPVEVQV 212
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 69.3 bits (162), Expect = 1e-10
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIA 418
+G D+ A AQ+GTGKTA FS+ ++QQ+ S + +ALI APTRELA+QI + A
Sbjct: 37 RGHDIFATAQTGTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPTRELAEQIADNIKA 96
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
+ N A GG + R LE+GV
Sbjct: 97 YTKYTNLSVAAIFGGRKMSSQERMLENGV 125
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/87 (29%), Positives = 49/87 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ + I + I+ V DEAD +L GF + + + + + Q+++ S
Sbjct: 127 ILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMMFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT + E+S+ +R P RI V++++
Sbjct: 187 ATTSSQLNELSKDILRKPKRIAVEREN 213
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 69.3 bits (162), Expect = 1e-10
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIA 418
+G D++ AQ+GTGKTA FS+ ILQ + R+ + LIL PTRELA QI + + A
Sbjct: 40 EGHDLLGIAQTGTGKTAAFSLPILQNLSKHTRKIEPKSPRCLILTPTRELAIQIHENIEA 99
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
HLN K GG +R L+ GV
Sbjct: 100 YSKHLNMKHAVIFGGVGQNPQVRALQGGV 128
Score = 58.0 bits (134), Expect = 3e-07
Identities = 26/83 (31%), Positives = 48/83 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D+ ++ L + +++FVLDEAD ML GF I + +L + S
Sbjct: 130 ILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRHNLFFS 189
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP ++ ++ + +P ++ V
Sbjct: 190 ATMPHEIQTLANRILVNPKKVEV 212
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 69.3 bits (162), Expect = 1e-10
Identities = 32/94 (34%), Positives = 52/94 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D++ + LH I+ FVLDEAD ML GF I + L Q + S
Sbjct: 208 ILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKKQSLFFS 267
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLN 789
ATMP ++ ++ + +PV + V S +++N
Sbjct: 268 ATMPPEITRLAASILHNPVEVSVTPVSSTVEIIN 301
Score = 58.8 bits (136), Expect = 2e-07
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVIAL 421
G D++ AQ+GTGKTA F+I +LQ ++ R+ ++LI+ PTRELA QI + A
Sbjct: 119 GNDLLGCAQTGTGKTAAFAIPVLQLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAY 178
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G H GG N L+ G+
Sbjct: 179 GRHTGLTSTVIFGGVNQNPQTASLQKGI 206
>UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein;
n=7; Actinomycetales|Rep: DEAD/DEAH box helicase domain
protein - Arthrobacter sp. (strain FB24)
Length = 585
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D+ ++ L +K+ +LDEADEML GF + + A Q +L S
Sbjct: 168 IVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGTPAVRQTLLFS 227
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP V+ ++R +M P I
Sbjct: 228 ATMPGPVIAMARRYMTQPTHI 248
Score = 50.8 bits (116), Expect = 4e-05
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI----DTSIREC------QALILAPTRELAQQIQK 406
G D+I QA++GTGKT F I LQ++ D + QAL++ PTRELA Q+ K
Sbjct: 74 GHDIIGQAKTGTGKTLGFGIPALQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAK 133
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+ NA+ GG + L+ GV
Sbjct: 134 DLENAARKRNARIATIYGGRAYEPQVDSLQKGV 166
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 68.9 bits (161), Expect = 1e-10
Identities = 37/86 (43%), Positives = 50/86 (58%)
Frame = +2
Query: 242 NALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 421
NA+H G+DV+ QA++GTGKTA F +S+L Q+ + L+L TRELA QI+ L
Sbjct: 71 NAIH-GKDVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRL 129
Query: 422 GDHLNAKCHACIGGTNVREDIRQLES 499
G N K A GG DI L++
Sbjct: 130 GKFTNFKVKAVYGGVEESVDIHTLKT 155
Score = 37.9 bits (84), Expect = 0.30
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI--KDAMLSLK 278
+F+D +LK++LLR + GFE+PS +Q + I I KD + K
Sbjct: 39 SFNDFSLKQDLLRSVKEAGFERPSEVQHQCIPNAIHGKDVLCQAK 83
>UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2;
Bacillaceae|Rep: ATP-dependent RNA helicase -
Oceanobacillus iheyensis
Length = 432
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/92 (32%), Positives = 56/92 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D++ AL T K FV+DEAD ML GF +++ + D+Q+++ S
Sbjct: 126 IIVGTPGRILDLVKSGALSIYTAKSFVVDEADLMLDLGFIEEVDQLLVRSKQDIQLLVFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKV 783
AT+P + + ++++P+ + + + P K+
Sbjct: 186 ATIPQRLQHFFKKYIKNPLNVKINEHFSPEKM 217
Score = 50.4 bits (115), Expect = 5e-05
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ---KVVI 415
A+ +G V+ Q+++G+GKT F + + +++ +E Q +I APTRELA Q+ + +I
Sbjct: 34 AIIKGDSVVGQSRTGSGKTHAFLLPLFHGLESDKKEVQFVITAPTRELATQLYGEVRNII 93
Query: 416 ALGDHLNA-KCHACIGGTNVREDIRQLESGVH 508
L D +GGT+ ++ +L++ H
Sbjct: 94 TLADKTKEWNAKLLVGGTDKQKMTEKLKTPPH 125
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/83 (39%), Positives = 51/83 (61%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G+D+I ++++GTGKTA F + +L++I R +ALIL PTRELA Q+ + L H
Sbjct: 65 EGKDLIVRSKTGTGKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKMLAKHK 124
Query: 434 NAKCHACIGGTNVREDIRQLESG 502
K A GG ++++ LE G
Sbjct: 125 GLKIAAIYGGASMKQQEDALEEG 147
Score = 65.3 bits (152), Expect = 2e-09
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E ++VGTPGRV+D I R L + VLDEADEML++GF +++ + L QV
Sbjct: 146 EGTPIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQV 205
Query: 676 ILLSATMPDDV 708
+L SAT+P D+
Sbjct: 206 LLFSATVPTDI 216
Score = 33.9 bits (74), Expect = 5.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
FDDMNL E + + G+ P+ +Q RA P I+
Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIE 65
>UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase
DbpA; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to ATP-independent RNA helicase DbpA -
Candidatus Kuenenia stuttgartiensis
Length = 407
Score = 68.9 bits (161), Expect = 1e-10
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ L IK +LDEADE+L GF + I + + Q +L S
Sbjct: 122 ILVATPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILSCIRHKHQTLLFS 181
Query: 688 ATMPDDVLEVSRCFMRDPVRI-LVQKKSLPWKVLNNFT 798
ATMPDD+ ++++ + +P I LV K+S P + + F+
Sbjct: 182 ATMPDDIKKLTQDCLHEPQYISLVTKRSAPESIEHYFS 219
Score = 56.0 bits (129), Expect = 1e-06
Identities = 27/84 (32%), Positives = 48/84 (57%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+ A A++G+GKTA +I ++Q++D S+ Q L++ PTREL Q + + + +
Sbjct: 38 GHDLCALAETGSGKTAACAIPLIQKVDPSLDAIQGLVIVPTRELCMQYVEEIRKIAAKTD 97
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+A GG + I +++ VH
Sbjct: 98 VIPYAVYGGFDRAAQIARVKQTVH 121
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 68.9 bits (161), Expect = 1e-10
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L Q D+I QAQ+GTGKTA F + I+Q+I+ +++ QALIL PTRELA Q+ + + +
Sbjct: 37 LSQDHDIIGQAQTGTGKTAAFGLPIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCK 96
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
GG + + R L+ GV
Sbjct: 97 GRGITTVTLYGGAPIMDQKRALKKGV 122
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/94 (32%), Positives = 54/94 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
LVV TPGR I L ++++ VLDEADEML+ GF + + V K D V++ S
Sbjct: 124 LVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLN 789
ATMP + +++ +M + + I + +++ + ++
Sbjct: 184 ATMPPRLKKIAESYMHNSITIKAKSETMTMETID 217
>UniRef50_Q9FLB0 Cluster: DEAD-box ATP-dependent RNA helicase 18;
n=8; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 18 - Arabidopsis thaliana (Mouse-ear cress)
Length = 593
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
E C++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200
Query: 673 VILLSATMPDDVLEVSRCFMRDPVRILVQKKS 768
L SAT + V E+++ +R+PVR+ V+ KS
Sbjct: 201 TGLFSATQTEGVEELAKAGLRNPVRVEVRAKS 232
Score = 41.5 bits (93), Expect = 0.025
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Frame = +2
Query: 218 FCNP--ATRNNALHQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 373
FC P A L +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 374 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 496
PTREL+ QI V L N +GG V+ D++ +E
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 684
+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ ++ V + FM+DP+ I V ++
Sbjct: 229 SATLSKEIRPVCKKFMQDPMEIYVDDEA 256
Score = 62.1 bits (144), Expect = 2e-08
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 434 NAKCHACIGGTNVR 475
+ K GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156
Score = 33.1 bits (72), Expect = 8.7
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 68.9 bits (161), Expect = 1e-10
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+I QA+SGTGKT F+ L + Q L+LAPTRE+A QI VV+A+G +
Sbjct: 63 GLDLIVQAKSGTGKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAME 122
Query: 437 A-KCHACIGGTNVREDIRQLE 496
+CH IGG + +D + L+
Sbjct: 123 GLECHVFIGGRPISQDKQHLK 143
Score = 68.9 bits (161), Expect = 1e-10
Identities = 33/84 (39%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEML----SRGFKDQIHDVFKMLSADV 669
C + +G+PGR+ +I AL ++I+LFVLDEAD++L S F++QI+ ++ L A+
Sbjct: 145 CHIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLPANK 204
Query: 670 QVILLSATMPDDVLEVSRCFMRDP 741
Q++ LSAT P+ + + +MR+P
Sbjct: 205 QMLALSATYPESLAQQLSRYMREP 228
>UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=55; Lactobacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Enterococcus faecalis
(Streptococcus faecalis)
Length = 449
Score = 68.5 bits (160), Expect = 2e-10
Identities = 32/106 (30%), Positives = 63/106 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ DM+ +AL +T FV+DEAD L GF ++ + L +Q+++ S
Sbjct: 126 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KNGS 825
AT+P+ + + ++ +PV ++ K++ + ++N+ + KN +
Sbjct: 186 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSN 231
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV--IAL 421
+ +G+ VI Q+Q+G+GKT TF + ++ ++ +I E Q +I AP+RELA QI + +A
Sbjct: 36 IKKGKSVIGQSQTGSGKTHTFLLPLMDKVKPTIDEVQIVITAPSRELANQIYQEAQQLAR 95
Query: 422 GDHLNAKCHACIGGTNVREDIRQLE 496
+ +GGT+ + + +L+
Sbjct: 96 FSQPEIRVSNFVGGTDKQRQLNKLK 120
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHL 433
G+D+I QA++GTGKT F + IL++ID + QALI+APTRELA QI ++ L
Sbjct: 42 GKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQRE 101
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ A GG +V + +R+L+ H
Sbjct: 102 DINVLAIYGGQDVAQQLRKLKGNTH 126
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D I R + + + VLDEAD+ML GF I D+ Q +L S
Sbjct: 127 IVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT+P D+ ++++ +M +P I VQ + +
Sbjct: 187 ATIPKDIKKLAKRYMDEPQMIQVQSEEV 214
>UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=2;
Clostridium difficile|Rep: Putative ATP-dependent RNA
helicase - Clostridium difficile (strain 630)
Length = 381
Score = 68.5 bits (160), Expect = 2e-10
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIALGD 427
Q +D++ +Q+GTGKT + + I ++IDTS RE QALILAPT EL QI Q ++A
Sbjct: 38 QNKDLLINSQTGTGKTLAYLLPIFEKIDTSKRETQALILAPTHELVMQITNQVELLAKNA 97
Query: 428 HLNAKCHACIGGTNVREDIRQLES 499
L+ A IG N+++ I+ +++
Sbjct: 98 ELSVTSLALIGEVNIQKQIKNIKA 121
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/87 (32%), Positives = 50/87 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+G+ GRV D+I ++ L ++ IK VLDE D +L+ I D+ + D Q+I S
Sbjct: 126 IVIGSCGRVLDLIKQKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRTTLRDRQIIGCS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
A++ D +++ M++ I ++KS
Sbjct: 186 ASLTDSTIKICDKLMKEFEIIKTKEKS 212
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR D + R L + + VLDEADEML GF + I + + Q +L S
Sbjct: 181 VVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFS 240
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT+P + +++R +RDPVRI +
Sbjct: 241 ATLPPRMDQIARRHLRDPVRIQI 263
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGD 427
GRD++ QA +GTGKTA F++ +L ++ T QAL+L PTRELA Q+ + + G
Sbjct: 94 GRDLLGQAATGTGKTAAFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGR 153
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
L A+ GG + +R L GV
Sbjct: 154 DLGARVLPVYGGAPIGRQVRALVQGV 179
Score = 37.5 bits (83), Expect = 0.40
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +3
Query: 123 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
D D + V F ++ L+ ELLR + A G+E+P+ IQ+ A+ P +
Sbjct: 49 DIDPAEDVAGFAELALRPELLRSLAALGYEEPTPIQREAVPPLV 92
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 68.5 bits (160), Expect = 2e-10
Identities = 30/88 (34%), Positives = 50/88 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR D + R+ L +++ VLDEADEML GF + + + Q L S
Sbjct: 160 VVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTALFS 219
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT+P + ++ +R+PVR+ + ++ +
Sbjct: 220 ATLPPRIASIAERHLREPVRVRIAREKV 247
Score = 61.7 bits (143), Expect = 2e-08
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIA 418
L +G+D++ A +GTGKTA FS+ +LQ+I AL+L PTRELA Q+ + +
Sbjct: 70 LLEGKDLLGIAATGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHR 129
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
G L GG + + +R L+ GV
Sbjct: 130 YGQKLGISVVPLYGGQVISQQLRVLKRGV 158
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 68.5 bits (160), Expect = 2e-10
Identities = 32/90 (35%), Positives = 54/90 (60%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++VV TPGR+YD ++R ++ T+++ +LDE+D ML GF I + + A+ Q +L
Sbjct: 124 NIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQTLLF 183
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
SAT+ V ++ +R+ VRI + S P
Sbjct: 184 SATLESSVKQLVETHVRNAVRIELGSISKP 213
Score = 67.3 bits (157), Expect = 4e-10
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDH 430
G+D++A AQ+GTGKT F + +Q + T R+ +ALIL PTRELA QI + ++ +
Sbjct: 39 GKDIVATAQTGTGKTLAFLLPTIQLLSTEPRQPGVRALILTPTRELALQINEALLQIARG 98
Query: 431 LNAKCHACIGGTNVREDIRQLESGVH 508
+ +GG N R +R + G +
Sbjct: 99 TGIRAAVAVGGLNERSQLRDIRGGAN 124
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH- 430
+ +D+I Q+Q+G+GKT + + I Q+ID+S RE QALILAPT EL QI K + L +
Sbjct: 39 KNKDIIGQSQTGSGKTLAYLLPIFQKIDSSKRETQALILAPTHELVMQIDKQIKTLSSNA 98
Query: 431 -LNAKCHACIGGTNVREDIRQLESGVH 508
L IG N+ I +L+ H
Sbjct: 99 GLTINSTVMIGEVNIVRQIEKLKEKPH 125
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/88 (31%), Positives = 51/88 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VG+ GRV ++I R+ + ++TIK V+DEAD +L + + DV K D Q+++ S
Sbjct: 126 IIVGSTGRVLELIKRKKISSHTIKTIVIDEADMLLDQNNLAGVKDVIKTTMRDRQLMIFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
A M + S+ +D I+++ + L
Sbjct: 186 AYMNQRAMAESKELTKDAEVIIIEDEIL 213
>UniRef50_Q4P9E5 Cluster: ATP-dependent rRNA helicase SPB4; n=2;
Ustilago maydis|Rep: ATP-dependent rRNA helicase SPB4 -
Ustilago maydis (Smut fungus)
Length = 767
Score = 68.5 bits (160), Expect = 2e-10
Identities = 29/84 (34%), Positives = 57/84 (67%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ ++++++ + +++++ VLDEAD +L GF + + + +L + L S
Sbjct: 211 ILVGTPGRLEELLSKKGVKKSSLEVLVLDEADRLLDLGFTENLRRILSLLPKQRRTGLFS 270
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
ATM D + E+ R +R+PVR++V+
Sbjct: 271 ATMTDALSELVRIGLRNPVRVVVK 294
Score = 49.2 bits (112), Expect = 1e-04
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQI---DTSIR--ECQALILAPTRELAQQIQKVVIALG 424
+DV+ +A +G+GKT F I +L+ + T ++ E ALI++PTRELA+QI KV++
Sbjct: 66 KDVVVEAVTGSGKTLAFVIPVLEMLARRTTRLKKDEVGALIVSPTRELAEQIYKVLVMF- 124
Query: 425 DHLNAKCHACIGGTNVREDIRQLE 496
L+A+ HA + ++ Q E
Sbjct: 125 --LDAQNHAHVQAQQQQDQDEQDE 146
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 68.5 bits (160), Expect = 2e-10
Identities = 35/85 (41%), Positives = 50/85 (58%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G D+I AQ+G+GKTA F+I IL ++ A ILAPTRELAQQI++ +LG +
Sbjct: 117 EGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLM 176
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ +GG N+ + R L H
Sbjct: 177 GVRSTCIVGGMNMMDQARDLMRKPH 201
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVIL 681
+++ TPGR+ D + + +K V+DEAD +L F + + K++ + + L
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQKK 765
SATM + ++ R + +PV+ V K
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNK 289
Score = 36.3 bits (80), Expect = 0.93
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 123 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
+T+ D+ E+F ++NL EL++ + KP+ IQ +AI P ++
Sbjct: 73 NTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALE 117
>UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;
Eukaryota|Rep: ATP-dependent RNA helicase DDX39 - Homo
sapiens (Human)
Length = 427
Score = 68.5 bits (160), Expect = 2e-10
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILL 684
+VVGTPGR+ ++ R+ +K FVLDE D+ML + + + ++F++ + Q ++
Sbjct: 167 VVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMF 226
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ D+ V R FM+DP+ + V ++
Sbjct: 227 SATLSKDIRPVCRKFMQDPMEVFVDDET 254
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G DV+ QA+SG GKTA F ++ LQQI+ + L++ TRELA QI K ++
Sbjct: 81 GMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMP 140
Query: 434 NAKCHACIGGTNVRED 481
+ K GG ++++D
Sbjct: 141 SVKVSVFFGGLSIKKD 156
Score = 34.7 bits (76), Expect = 2.8
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 51 DSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET-FDDMNLKEELLRGIYAYGFEKPSAI 227
D + P Q S PP D + + + + F D LK ELLR I GFE PS +
Sbjct: 14 DEEEEPQAPQESTPAPPKKD---IKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEV 70
Query: 228 QQRAIMPCIKDAMLSL 275
Q CI A+L +
Sbjct: 71 QHE----CIPQAILGM 82
>UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX27;
n=34; Bilateria|Rep: Probable ATP-dependent RNA helicase
DDX27 - Homo sapiens (Human)
Length = 796
Score = 68.5 bits (160), Expect = 2e-10
Identities = 31/88 (35%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++ TPGR+ D + + H ++I++ +LDEAD ML F++Q+ ++ +M S Q +L
Sbjct: 342 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLF 401
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SATM D+V +++ +++PVRI V +
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFVNSNT 429
Score = 52.8 bits (121), Expect = 1e-05
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIREC---QALILAPTRELAQQIQKVVIALGD 427
G+D+ A A +GTGKTA F++ +L+++ R+ + L+L PTREL Q+ V L
Sbjct: 255 GKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQ 314
Query: 428 HLNAKCHACIGGTNVR 475
N +GG +V+
Sbjct: 315 FCNITTCLAVGGLDVK 330
Score = 35.9 bits (79), Expect = 1.2
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 102 GMDPGTLDTDWDQVVE--TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
G + G D Q E +F DMNL LL+ I A GF++P+ IQ+ I
Sbjct: 201 GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACI 249
>UniRef50_UPI0000E49D13 Cluster: PREDICTED: similar to DEAD
(Asp-Glu-Ala-Asp) box polypeptide 59; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 -
Strongylocentrotus purpuratus
Length = 620
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/88 (36%), Positives = 52/88 (59%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
+VGTPGR+ ++I + + + IKL +DE D ML GF+ Q++D+ L + Q I SA
Sbjct: 351 IVGTPGRIMEIIKQEGVCLSEIKLVAIDEVDTMLQLGFQQQVYDIMTHLPDNHQTIFTSA 410
Query: 691 TMPDDVLEVSRCFMRDPVRILVQKKSLP 774
T+P + +++ + +PV I V S P
Sbjct: 411 TIPSSIEKMASSLLSNPVFISVGTPSTP 438
>UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=1;
Propionibacterium acnes|Rep: Putative ATP-dependent RNA
helicase - Propionibacterium acnes
Length = 561
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D+ R+ L + +++ VLDEADEML GF + ++ A Q +L S
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP ++ ++R + PV +
Sbjct: 244 ATMPAPIMALARSQLHRPVHV 264
Score = 54.4 bits (125), Expect = 3e-06
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID----------TSIRECQALILAPTRELAQQIQ 403
+G D+I QA++GTGKT F I+IL +I T+ + QAL++ PTRELA Q+
Sbjct: 89 EGTDLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMCPTRELALQVS 148
Query: 404 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
K + A+ GG I L++GV
Sbjct: 149 KDISTAASVRGARVLTVYGGVGYESQIDALKAGV 182
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/104 (30%), Positives = 57/104 (54%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+I ++ +++FVLDEAD ML GF + + L Q +L S
Sbjct: 128 ILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFS 187
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KN 819
ATMP ++ ++ + DP +I + +++ ++N L+ N
Sbjct: 188 ATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSN 231
Score = 62.1 bits (144), Expect = 2e-08
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 409
AL G D++ AQ+GTGKTA FS+ I+ + ID + ++LIL PTRELA QI +
Sbjct: 35 ALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLILTPTRELASQIMQN 94
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+ D L K GG + + +E G+
Sbjct: 95 IDDYSDGLGLKTKVVYGGVGRQAQVDSIELGL 126
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 68.1 bits (159), Expect = 2e-10
Identities = 34/104 (32%), Positives = 58/104 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+ + A+ + ++ VLDEAD ML GF +++ VF L A Q +L S
Sbjct: 127 VLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KN 819
AT DD+ ++ +R PV I V + + + + ++ +N
Sbjct: 187 ATFSDDIRAMAATILRGPVNISVSPPNATASKIKQWVVTVDKRN 230
Score = 66.5 bits (155), Expect = 8e-10
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIAL 421
G+DV+A AQ+GTGKTA F++ +LQ++ S + L+L PTRELA+Q+ + IA
Sbjct: 38 GKDVMAGAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAY 97
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G L+ + A GG ++ + +L GV
Sbjct: 98 GKGLDLRFLAAYGGVSINPQMMKLRKGV 125
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/83 (34%), Positives = 52/83 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ ++ L + K VLDEAD+ML GF + + ++ D Q +L S
Sbjct: 229 ILVATPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLLFS 288
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATM ++ +++ ++ DPV++ V
Sbjct: 289 ATMSKEIKKLTETYLTDPVQVSV 311
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 409
A+ +D++ AQ+GTGKTA F++ ++QQ I R +A+IL+PTRELA QI +
Sbjct: 136 AVLNSKDLVGLAQTGTGKTAAFALPLIQQLLMNPIAIKGRSARAIILSPTRELALQIHEA 195
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
++ G L IGG +R+ +R L GV
Sbjct: 196 FVSFGKRLPLNFTHAIGGAPIRKQMRDLSKGV 227
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
LVVGTPGR+ D + R L IK V+DEADEML GF + + + + + Q+++ S
Sbjct: 124 LVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQILMFS 183
Query: 688 ATMPDDVLEVSRCFM 732
ATMP ++ ++R M
Sbjct: 184 ATMPQRIVTLARKHM 198
Score = 64.5 bits (150), Expect = 3e-09
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 442
+VI QAQ+GTGKTA F I +++++D + QAL+L PTRELA Q+ + +L +
Sbjct: 42 NVIGQAQTGTGKTAAFGIPLIERLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLN 101
Query: 443 CHACIGGTNVREDIRQLESGV 505
GG ++ IR L+ V
Sbjct: 102 LLPVYGGVSIGNQIRALKRRV 122
>UniRef50_Q4Z5Q6 Cluster: ATP-dependent RNA helicase, putative; n=4;
Plasmodium (Vinckeia)|Rep: ATP-dependent RNA helicase,
putative - Plasmodium berghei
Length = 1312
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMIT---RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 678
++VGTPGR+ D++T + + N VLDEAD +L GF+ QIH + D Q
Sbjct: 695 IIVGTPGRIIDILTISNSKVTNLNRASFIVLDEADRLLDLGFESQIHSILNNCRKDKQTA 754
Query: 679 LLSATMPDDVLEVSRCFMRDPVRILVQKK 765
++SAT P+ + +++ + P+ I+V +K
Sbjct: 755 MISATFPNYIQNLAKKLLYKPIEIIVGEK 783
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQA---LILAPTRELAQQIQKV 409
AL GRD+IA A++G+GKT ++ +++ + +R +IL PTREL+ Q++
Sbjct: 602 ALMCGRDIIAIAETGSGKTISYLFPLIRHVLHQDKLRNNDGPIGIILTPTRELSIQVKNE 661
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
++ K A GG+N+ + L+ GV
Sbjct: 662 ASIYCKAVDLKILAVYGGSNIGAQLNVLKKGV 693
>UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n=1;
Plasmodium vivax|Rep: ATP-dependent RNA helicase,
putative - Plasmodium vivax
Length = 1341
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 678
++VGTPGR+ D++T + + N + VLDEAD +L GF+ QIH++ D Q
Sbjct: 795 ILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIHNILNNCRKDKQTA 854
Query: 679 LLSATMPDDVLEVSRCFMRDPVRILVQKK 765
++SAT P+ + +++ + P+ I+V +K
Sbjct: 855 MISATFPNYIQNLAKKLLYKPIEIIVGEK 883
Score = 52.4 bits (120), Expect = 1e-05
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 409
AL GRDVIA A++G+GKT ++ +++ + +R A+IL PTREL++Q++
Sbjct: 702 ALMCGRDVIAIAETGSGKTLSYLFPLIRHVLHQPPLRNNDGPIAIILTPTRELSKQVKSE 761
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+N + A GG+N+ + L+ GV
Sbjct: 762 ARPYCQAVNLRILAVYGGSNIGTQLNTLKRGV 793
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 67.7 bits (158), Expect = 3e-10
Identities = 30/89 (33%), Positives = 52/89 (58%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C + VG PGRV ++ AL N +KLFVLDEAD+++ F+ I++++ L Q+I+
Sbjct: 143 CHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEADKLMEESFQSDINEIYNSLPPRKQMIV 202
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT P ++ +M+ P + + ++
Sbjct: 203 SSATYPQELDTFLANYMQSPTHVTSENET 231
Score = 66.9 bits (156), Expect = 6e-10
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+I +++SGTGKT FS L+ ++T+ Q LIL PTRE+A QI+ V+ ++G H+N
Sbjct: 61 GFDLIVKSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVN 120
Query: 437 A-KCHACIGGTNVREDIRQ 490
K + IGG + +D+++
Sbjct: 121 GLKIESFIGGRPLEDDLKK 139
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 67.7 bits (158), Expect = 3e-10
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D I R + + ++ +LDEADEMLS GF D + + + L+ Q +L S
Sbjct: 136 VLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLLFS 195
Query: 688 ATMPDDVLEVSRCFMRDPVRI-LVQKKSLP 774
ATMP + +++ M+DP + L+ +++ P
Sbjct: 196 ATMPAAIQRLAKHHMKDPQEVNLILEQASP 225
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/86 (37%), Positives = 51/86 (59%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
+ + +D+IA +Q+G+GKTAT +I I +++T + + QALI+ PTRELA Q +G
Sbjct: 49 IQKKQDLIALSQTGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGK 108
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
+ K A GG + +L+ GV
Sbjct: 109 YKGVKAFAIFGGEDSALQQSKLKHGV 134
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 67.7 bits (158), Expect = 3e-10
Identities = 29/87 (33%), Positives = 56/87 (64%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +G++++ ++++G+GKTA+F+I + + I+ QALI+ PTRELA Q++ + +G
Sbjct: 37 LLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGR 96
Query: 428 HLNAKCHACIGGTNVREDIRQLESGVH 508
+C A G ++++ I +L+ VH
Sbjct: 97 LKKVRCSAIFGKQSIKDQIAELKQRVH 123
Score = 59.7 bits (138), Expect = 9e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D I R ++ +K V+DEAD+M ++GF +Q+ + L + V L S
Sbjct: 124 IVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFS 183
Query: 688 ATMPDDVLEVSRCFMRD 738
AT+ +++ + +M D
Sbjct: 184 ATIDEEIKYICEKYMLD 200
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHL 433
G DVI AQ+GTGKTA +++ I+Q++ ++ R + L++APTRELA QI +LG
Sbjct: 38 GHDVIGLAQTGTGKTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRA 97
Query: 434 NAKCHACIGGTNVREDIRQLESGV 505
+ + GG N+ + IR+L SGV
Sbjct: 98 RIRECSIYGGVNMDQQIRRLRSGV 121
Score = 58.4 bits (135), Expect = 2e-07
Identities = 30/87 (34%), Positives = 47/87 (54%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV PGR+ D I R + ++ ++DEAD M GF+ I + K L Q +L S
Sbjct: 123 VVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP +V +++ +PV + V +S
Sbjct: 183 ATMPPEVRKLTLETQTNPVTVQVGTQS 209
>UniRef50_A4EAF2 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 749
Score = 67.7 bits (158), Expect = 3e-10
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C ++V TPGR+ D+I + A H + +K+ VLDEAD ML GF + + + A+ Q +L
Sbjct: 189 CDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDMGFLPAVRRIVRETPAERQTLL 248
Query: 682 LSATMPDDVLEVSRCFMRDPVRI 750
SAT+ ++ + + DP R+
Sbjct: 249 FSATLDEEAVGEITDLVSDPARV 271
Score = 39.1 bits (87), Expect = 0.13
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 24/107 (22%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQA------------------- 361
+GRD++A AQ+GTGKTA F + + ++ +RE
Sbjct: 82 EGRDLLAAAQTGTGKTAAFLLPTMNNLEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVM 141
Query: 362 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 502
L++ PTRELAQQI +V + D +GG + + L+ G
Sbjct: 142 LVITPTRELAQQIDEVAGKIADVTGHVAVTVVGGVSYKPQTAALKYG 188
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/70 (48%), Positives = 46/70 (65%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRD+IA A++G+GKTA+F+I IL Q+ A+IL PTRELA QI + A+G +
Sbjct: 40 KGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPM 99
Query: 434 NAKCHACIGG 463
N C IGG
Sbjct: 100 NVNCSVVIGG 109
Score = 36.7 bits (81), Expect = 0.70
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHA-NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV--QVI 678
++V TPGR+ + A K VLDEAD +L F+ +I + + L Q +
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQTL 184
Query: 679 LLSATMPDDVLEVSRCFMRDP 741
L SATM ++ ++ + P
Sbjct: 185 LFSATMTKNLTKLDSIALNKP 205
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 67.7 bits (158), Expect = 3e-10
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QGRD+IA A++G+GKTA F + ILQ++ + ALILAPTREL QI + ++A+G L
Sbjct: 87 QGRDIIALAETGSGKTAAFGLPILQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTL 146
Query: 434 NAKCHACIGG 463
+GG
Sbjct: 147 GVTVVTLVGG 156
Score = 53.6 bits (123), Expect = 6e-06
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS--ADVQVI 678
+VVG+PGRV D + + + ++K+ VLDEAD +LS F + + + + A+ Q +
Sbjct: 172 VVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTM 231
Query: 679 LLSATMPDDVLEVSRCFMRDPVRILVQKK 765
L SATM V ++ + ++ PV++ V K
Sbjct: 232 LFSATMTTKVSKLQKASLKKPVKLEVNSK 260
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D + + + + + V+DEAD ML GF D I DV + A Q +L S
Sbjct: 125 IIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P+ + +S RDP+ I
Sbjct: 185 ATWPEAIAAISGRVQRDPLAI 205
Score = 66.1 bits (154), Expect = 1e-09
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
A+ G+DV QA++G+GKTA F + +LQQID S+ + QAL+L PTRELA Q+ + L
Sbjct: 36 AILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLA 95
Query: 425 DHL-NAKCHACIGG 463
L N K GG
Sbjct: 96 RFLPNTKILTLCGG 109
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 67.3 bits (157), Expect = 4e-10
Identities = 32/86 (37%), Positives = 52/86 (60%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
S+VV TPGR+ D++ + N VLDEADEML GF D+I ++F L + Q ++
Sbjct: 119 SIVVATPGRLQDLLMSGKIKLNP-HFVVLDEADEMLDMGFLDEIKNIFTFLPKERQTLMF 177
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQK 762
SATMP+ + +++ + +P + + K
Sbjct: 178 SATMPNGIRKLAEQILNNPKTVSITK 203
Score = 58.0 bits (134), Expect = 3e-07
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G D+IAQAQ+GTGKTA F + I+ + + L++ PTRELA Q+ + G
Sbjct: 37 EGHDMIAQAQTGTGKTAAFGLPIMSMMKAD-GSVEGLVIVPTRELAMQVSDELFRFGKLS 95
Query: 434 NAKCHACIGGTNVREDIRQLE 496
K GGT + I +++
Sbjct: 96 GLKTATVYGGTAYGKQIERIK 116
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 67.3 bits (157), Expect = 4e-10
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF-KMLSADVQVILL 684
+VVGTPGRV D + RR L + I +LDEADEM++ GF D + + K+ + Q +L
Sbjct: 122 IVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLF 181
Query: 685 SATMPDDVLEVSRCFMRDP 741
SATMP + + + FM+ P
Sbjct: 182 SATMPKAIQALVQQFMKSP 200
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QG D++ QAQ+GTGKT F I +++++ + Q+LILAPTRELA Q+ + +
Sbjct: 38 QGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRGQ 96
Query: 434 NAKCHACIGGTNVREDIRQLESG 502
+ GG + I+ L+ G
Sbjct: 97 GVQVVTVFGGMPIERQIKALKKG 119
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 66.9 bits (156), Expect = 6e-10
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIAL 421
A+ +G D+IA A++G+GKTA + + I+ +++T E ++LI+ PTRELA Q KV L
Sbjct: 46 AILRGNDIIAMARTGSGKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNEL 105
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G N K IGG+ + + L SG
Sbjct: 106 GKLTNLKASLIIGGSKLSDQFDNLSSG 132
Score = 60.1 bits (139), Expect = 7e-08
Identities = 29/96 (30%), Positives = 53/96 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ ++ + N +++ DEAD M GF +Q+ D+ +ML Q++L S
Sbjct: 135 IIVATPGRLTFILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFS 194
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+P ++ E + ++ P I + + L+NF
Sbjct: 195 ATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNF 230
>UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28;
Alphaproteobacteria|Rep: Cold-shock dead-box protein A -
Bradyrhizobium japonicum
Length = 650
Score = 66.9 bits (156), Expect = 6e-10
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIA 418
GRD++ AQ+G+GKT + +++ + + I + ALI+APTRELA Q+Q+ +
Sbjct: 36 GRDLLVSAQTGSGKTLAYGLALAKDLLDGIERFERAGAPLALIVAPTRELALQVQRELAW 95
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGVH 508
L +H + + +C+GG + R + R+L +G H
Sbjct: 96 LYEHADGRVVSCVGGMDPRREQRELAAGAH 125
Score = 62.1 bits (144), Expect = 2e-08
Identities = 30/83 (36%), Positives = 50/83 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + R L + +K VLDEADEML+ GF++ + + + + +L S
Sbjct: 126 IVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRRTLLFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT P ++ +++ + + RI V
Sbjct: 186 ATFPRGIVALAKQYQQQAFRIEV 208
>UniRef50_Q5FLW7 Cluster: RNA helicase; n=9; Lactobacillus|Rep: RNA
helicase - Lactobacillus acidophilus
Length = 453
Score = 66.9 bits (156), Expect = 6e-10
Identities = 33/104 (31%), Positives = 54/104 (51%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
LV+ TPGR+ D + ++ + +K FV+DEAD L GF I V + DVQ+ S
Sbjct: 127 LVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLSDIDQVASKMPKDVQIAAFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KN 819
AT+P + R +M P +I++ S+ + N + + K+
Sbjct: 187 ATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTIKNDLIDIGSKD 230
Score = 47.2 bits (107), Expect = 5e-04
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +2
Query: 266 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD--HLNA 439
V+ QA +G+GKT + + I +ID + QA++ P+RELA Q+ +V L D ++
Sbjct: 43 VVVQAATGSGKTHAYLVPIFNEIDEAAHYVQAIVTLPSRELADQLYQVARKLRDAAGMHF 102
Query: 440 KCHACIGGTNVREDIRQLE 496
GGT+ RE RQLE
Sbjct: 103 SIAHLAGGTD-RE--RQLE 118
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 66.9 bits (156), Expect = 6e-10
Identities = 31/87 (35%), Positives = 52/87 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D I + +++++ VLDEAD ML GF D I D+ + D Q I+ S
Sbjct: 169 VIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQTIMCS 228
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT V +++ F ++P R+ ++ +S
Sbjct: 229 ATWDGPVGKIAASFTKNPERVSIKVES 255
Score = 58.8 bits (136), Expect = 2e-07
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID--TSI-RECQALILAPTRELAQQIQKVVIALG 424
QGRD++ AQ+G+GKTA F I +L ++ TS + +ALIL PTRELAQQ+ V
Sbjct: 80 QGRDLLLSAQTGSGKTAAFVIPVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTYS 139
Query: 425 -DHLNAKCHACIGGTNVREDIRQLESGV 505
D C +GG I L+ GV
Sbjct: 140 KDMRGLFCVPLVGGAPYNGQITALKKGV 167
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 66.9 bits (156), Expect = 6e-10
Identities = 31/87 (35%), Positives = 50/87 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D + R +T+K VLDEADEML GF + + +F L Q +L S
Sbjct: 145 ILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTVLFS 204
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT+P + E++ + +P + + K+
Sbjct: 205 ATLPHSIREIAEKHLHEPQHVKIAAKT 231
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G D+I QAQ+GTGKTA F++ +L +ID + RE Q LILAPTRELA Q+ L
Sbjct: 60 GHDMIGQAQTGTGKTAAFALPMLSRIDPARREPQLLILAPTRELALQVATAFETYASQLP 119
Query: 434 NAKCHACIGGTNVREDIRQLESG 502
A GG + ++ L G
Sbjct: 120 GVGVVAVYGGAPMGPQLKALRQG 142
>UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;
Sulfurovum sp. NBC37-1|Rep: ATP-independent RNA helicase
DbpA - Sulfurovum sp. (strain NBC37-1)
Length = 453
Score = 66.9 bits (156), Expect = 6e-10
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++GTPGR+ D + + L +IK VLDEAD ML GF ++I + + Q +L S
Sbjct: 125 ILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQTLLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT P + +++ ++DP+ I V
Sbjct: 185 ATFPPKIESLAKALLKDPLTIKV 207
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH- 430
+G+D++AQ+++G+GKT F I + D + Q +++ PTRELA+Q+ + + +
Sbjct: 39 KGKDILAQSKTGSGKTLAFGIPAVMGTDVKSNKPQTIVITPTRELAEQVAMELRKIAAYK 98
Query: 431 LNAKCHACIGGTNVREDIRQLESGVH 508
N K GG +R L G H
Sbjct: 99 ANLKILTLYGGVPLRAQADSLAKGAH 124
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 66.9 bits (156), Expect = 6e-10
Identities = 33/89 (37%), Positives = 52/89 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ V TPGR D + + + I VLDEAD ML GF+ QI ++ + L Q +L S
Sbjct: 245 IAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFS 304
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
ATMP ++ +++ ++ +PV++ V K S P
Sbjct: 305 ATMPVEIEALAKEYLANPVQVKVGKVSSP 333
Score = 66.1 bits (154), Expect = 1e-09
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 6/89 (6%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQ--IDTSIRECQ---ALILAPTRELAQQIQKVVIAL 421
GRD++ A++G+GKTA F+I +LQ + IR AL+LAPTRELAQQI+K V A
Sbjct: 155 GRDLLGCAETGSGKTAAFTIPMLQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAF 214
Query: 422 GDHLNA-KCHACIGGTNVREDIRQLESGV 505
L + K +GGTN+ + +L +GV
Sbjct: 215 SRSLESLKNCIVVGGTNIEKQRSELRAGV 243
>UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 573
Score = 66.9 bits (156), Expect = 6e-10
Identities = 32/88 (36%), Positives = 47/88 (53%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D + L I V+DEAD ++ GF+ QI +F + D QV+ S
Sbjct: 265 IVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWS 324
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P V + +R P+R+ + L
Sbjct: 325 ATWPKKVSSFAEKHIRTPIRLQIGSSQL 352
Score = 37.5 bits (83), Expect = 0.40
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIREC-----QALILAPTRELAQQIQKVVIAL 421
G D++ +++G+GKT +F + ++ I R+ L++APTRELA QI +
Sbjct: 176 GSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSVLVVAPTRELANQINQEAEQY 235
Query: 422 GDHLNAKCHACIGGTNVREDIRQL 493
+N + GG R QL
Sbjct: 236 LRLVNIEIATIYGGAPRRSQQLQL 259
>UniRef50_Q234J0 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 744
Score = 66.9 bits (156), Expect = 6e-10
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD-----VQ 672
+VVGTPGR+ D R AL ++I VLDEAD+ML+ GF++ I +F + D Q
Sbjct: 198 IVVGTPGRIIDQYERGALMFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKGEERPQ 257
Query: 673 VILLSATMPDDVLEVSRCFMRDPVRILV 756
+L SATMP V +++R F+R+ R+L+
Sbjct: 258 NLLFSATMPSWVHDIARKFLRED-RVLI 284
Score = 48.4 bits (110), Expect = 2e-04
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQA---LILAPTRELAQQI 400
A+ G+D+I + ++G+GKT FS+ +++++ TSI++ Q L++ PTREL Q+
Sbjct: 101 AIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIKKKQTPYMLVVVPTRELCIQV 160
Query: 401 QKVVIALGDHLNA-KCHACIGGTNVREDIRQLESGV 505
+ L N + GG +VRE Q+ GV
Sbjct: 161 ANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGV 196
>UniRef50_Q16T16 Cluster: DEAD box ATP-dependent RNA helicase; n=7;
Bilateria|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 741
Score = 66.9 bits (156), Expect = 6e-10
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D++ + +I VLDEAD ML GF+ QI + + D Q I+ S
Sbjct: 450 IIIATPGRLNDLVAANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQTIMTS 509
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT P V +++ +M +PV++ V
Sbjct: 510 ATWPPGVRRLAQSYMSNPVQVYV 532
Score = 44.8 bits (101), Expect = 0.003
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQA------LILAPTRELAQQIQK 406
L +G D+I AQ+GTGKT F + I+ + +A L++APTRELA QI+K
Sbjct: 357 LLKGEDLIGIAQTGTGKTLAFLLPAFIHIEGQPVPRGEARGGPNVLVMAPTRELALQIEK 416
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
V + K GG + R I +++ GV
Sbjct: 417 EVFKY-QFRDIKAICLYGGGDRRTQINKVKGGV 448
>UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3;
Platyhelminthes|Rep: DEAD box polypeptide 19 protein -
Dugesia japonica (Planarian)
Length = 434
Score = 66.9 bits (156), Expect = 6e-10
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +2
Query: 251 HQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 430
+Q +++IAQ+QSGTGKTATF +++L +ID + CQ L +APTREL QI +V I +
Sbjct: 85 NQPKNLIAQSQSGTGKTATFLLTMLSKIDVNDPFCQCLCMAPTRELVNQIAEVAIIMSKF 144
Query: 431 LN 436
+N
Sbjct: 145 MN 146
Score = 45.6 bits (103), Expect = 0.002
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
V++F+D+ LK ELL GI + GF KPS+IQ+RA+
Sbjct: 47 VKSFEDLQLKSELLNGISSMGFRKPSSIQERAL 79
Score = 44.8 bits (101), Expect = 0.003
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMIT-RRALHANT--IKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQV 675
+++GTPG + T +L+ N +K+FVLDEAD ++ + F + + ++ + Q+
Sbjct: 170 IIIGTPGTLKFWTTDNSSLYFNPKKLKVFVLDEADILIETPEFLNIAKRIKSKVTNNCQI 229
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQL 807
+L SAT + V++ + F+ P ++ + L K + F +Q+
Sbjct: 230 LLFSATYDERVMDFAHDFVPQPNEFSIKPQELTLKNIKQFYIQM 273
>UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82;
Eukaryota|Rep: ATP-dependent RNA helicase WM6 -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 66.9 bits (156), Expect = 6e-10
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILL 684
+VVGTPGR+ +I + L+ +K FVLDE D+ML + + + ++F+ QV++
Sbjct: 165 IVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMF 224
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ D+ V + FM+DP+ + V ++
Sbjct: 225 SATLSKDIRPVCKKFMQDPMEVYVDDEA 252
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHL 433
G D++ QA+SG GKTA F ++ LQQ++ S C L++ TRELA QI K ++
Sbjct: 78 GMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYM 137
Query: 434 -NAKCHACIGGTNVREDIRQLESG 502
K GG +++D L+SG
Sbjct: 138 PTVKVAVFFGGMAIQKDEETLKSG 161
>UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Pseudomonas aeruginosa
Length = 397
Score = 66.9 bits (156), Expect = 6e-10
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Frame = +1
Query: 499 WCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQ 672
+C ++V TPGR+ D R +H + +++ VLDEAD ML GF Q+ + + + Q
Sbjct: 135 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 194
Query: 673 VILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
+L SAT DDV+ +++ + DP + ++ +++
Sbjct: 195 TLLFSATFTDDVMNLAKQWTVDPAIVEIEPENV 227
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKVV 412
+G+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K
Sbjct: 45 RGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDA 104
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLES 499
AL + +GG + + ++QLE+
Sbjct: 105 AALTKYTGLNVMTFVGGMDFDKQLKQLEA 133
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 66.5 bits (155), Expect = 8e-10
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 8/91 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQ----ALILAPTRELAQQIQKVV 412
G+DV+A AQ+GTGKTA F++ +L ++ +TS+ + ALI+APTRELA QI + V
Sbjct: 42 GKDVMASAQTGTGKTAGFTLPLLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESV 101
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESGV 505
G +L + GG N+ I L++GV
Sbjct: 102 RKYGKYLALRTAVVFGGINIEPQIAALQAGV 132
Score = 64.5 bits (150), Expect = 3e-09
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ ++A++ + ++ VLDEAD ML GF I V +LS Q ++ S
Sbjct: 134 ILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLMFS 193
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT ++ +++ ++ PVRI
Sbjct: 194 ATFSGEIRKLADSLLKQPVRI 214
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 66.5 bits (155), Expect = 8e-10
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIAL 421
QG+D++A AQ+GTGKTA F + I++ + + + +L+L PTRELA Q++ A
Sbjct: 60 QGKDIMASAQTGTGKTAAFILPIIELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAY 119
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
+L + A GG ++R +++L+ GV
Sbjct: 120 TKYLALRSDAVFGGVSIRPQVKRLQGGV 147
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+I ++ + + +K+ VLDEAD ML GF I V + L + Q ++ S
Sbjct: 149 ILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQNMMFS 208
Query: 688 ATMPDDVLEVSRCFMRDPVRI--LVQKKSLP 774
AT + +++ + DPV I VQ ++ P
Sbjct: 209 ATFSTPIKKLALGLLNDPVEIKASVQNQAAP 239
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 66.5 bits (155), Expect = 8e-10
Identities = 31/101 (30%), Positives = 57/101 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ ++A+ ++ VLDEAD ML GF D I + + D Q +L +
Sbjct: 129 ILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTLLFT 188
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
AT + V ++ ++ +P +I V ++ K + F Q++
Sbjct: 189 ATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVD 229
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIAL 421
+G D++A+AQ+GTGKTA+F++ I++++ + R +AL+LAPTRELA Q+ +
Sbjct: 40 RGDDLLAEAQTGTGKTASFALPIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEY 99
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G L + + GG V I++L+ G
Sbjct: 100 GRDLGMRVISVYGGVPVENQIKRLKRG 126
>UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=7; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 542
Score = 66.5 bits (155), Expect = 8e-10
Identities = 29/83 (34%), Positives = 52/83 (62%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D + ++ H N +++FVLDEAD+ML GF I + L + Q + S
Sbjct: 191 VVVATPGRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQNLFFS 250
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP ++ +++ +++P ++ +
Sbjct: 251 ATMPSEIGKLAGELLKNPAQVAI 273
Score = 56.0 bits (129), Expect = 1e-06
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIAL 421
GRD++ AQ+GTGKTA F++ IL ++ R + L+L+PTRELA QI +
Sbjct: 102 GRDLLGIAQTGTGKTAAFALPILHRLAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDY 161
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G H+ GG ++ L +GV
Sbjct: 162 GKHMGLTVATIFGGVKYGPQMKALAAGV 189
>UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 387
Score = 66.5 bits (155), Expect = 8e-10
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G+D+IA++ +GTGKT + I IL +ID + QA+ILAP+ ELA QI + +
Sbjct: 46 EGKDLIAESPTGTGKTLAYLIPILHRIDPESKAVQAVILAPSHELAMQIHQTIEKWTKDN 105
Query: 434 NAKCHACIGGTNVREDIRQLE 496
N IGG N++ I L+
Sbjct: 106 NISSEPLIGGANIKRQIENLK 126
Score = 48.8 bits (111), Expect = 2e-04
Identities = 22/95 (23%), Positives = 50/95 (52%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V T GR+ ++I + + + +K V+DE D +++ + + + K + Q++ S
Sbjct: 131 IIVATTGRLLEVIKLKKIKMHEVKTIVVDEFDILIAEEHAENLKHIIKTTLKERQIVCFS 190
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNN 792
AT+ ++ ++ M++P I +QK L+N
Sbjct: 191 ATISENTEQIGMELMKEPKIIQIQKGQSSLSTLSN 225
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 66.5 bits (155), Expect = 8e-10
Identities = 32/89 (35%), Positives = 49/89 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L+V TPGR+ D + + + ++ VLDEAD+ML GF I + L Q ++ S
Sbjct: 183 LLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFS 242
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLP 774
ATMP + ++ F+RDP + V +S P
Sbjct: 243 ATMPKPIRALAGEFLRDPREVAVSVESKP 271
Score = 64.9 bits (151), Expect = 2e-09
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIA 418
+G D++ AQ+GTGKTA F + IL +I + R C+AL+LAPTRELA QI
Sbjct: 93 EGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRACRALVLAPTRELATQIADAART 152
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
G IGG R++ESGV
Sbjct: 153 YGKFTRPSVAVVIGGAKPGPQARRMESGV 181
>UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein;
n=10; Alphaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9)
Length = 793
Score = 66.5 bits (155), Expect = 8e-10
Identities = 31/81 (38%), Positives = 52/81 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D I R +L + ++ VLDEADEML GF++ + + + + ++ S
Sbjct: 142 IVVGTPGRLRDHIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFS 201
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT+P ++ +++ F +D VRI
Sbjct: 202 ATVPKEIEALAKEFQQDAVRI 222
Score = 57.6 bits (133), Expect = 4e-07
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIA 418
GRD + AQ+G+GKT F I+I QI AL +APTRELA Q+ + +
Sbjct: 52 GRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIALAIAPTRELALQVARELGW 111
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGVH 508
L A C+GG + R + R L+ G H
Sbjct: 112 LYGEAGAHIATCVGGMDYRTERRALDRGAH 141
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 66.5 bits (155), Expect = 8e-10
Identities = 32/87 (36%), Positives = 53/87 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+ ++A+ N +++ VLDEAD ML GF I + ML A Q ++ S
Sbjct: 126 VLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT D++ E+++ + PV I V ++
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRN 212
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVV 412
A+ G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 34 AVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESV 93
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESGV 505
G +L + GG + I++L GV
Sbjct: 94 ETYGKYLPLRSAVVFGGVPINPQIQKLRHGV 124
>UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n=2;
Plasmodium|Rep: ATP-dependent RNA helicase, putative -
Plasmodium falciparum (isolate 3D7)
Length = 1490
Score = 66.5 bits (155), Expect = 8e-10
Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 678
++VGTPGR+ D++T + + N + VLDEAD +L GF+ QI+++ + D Q
Sbjct: 849 ILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTA 908
Query: 679 LLSATMPDDVLEVSRCFMRDPVRILVQKK 765
++SAT P+ + +++ + P+ I+V +K
Sbjct: 909 MISATFPNYIQNMAKKLLYKPIEIIVGEK 937
Score = 50.8 bits (116), Expect = 4e-05
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 409
AL GRDVIA A++G+GKT ++ +++ + +R ++IL PTREL+ Q++
Sbjct: 756 ALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGPISIILTPTRELSIQVKNE 815
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+N + A GG+N+ ++ L+ GV
Sbjct: 816 AKIYCKAVNIEILAVYGGSNIARQLKVLKKGV 847
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 66.5 bits (155), Expect = 8e-10
Identities = 32/88 (36%), Positives = 54/88 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ + + R + + I++ VLDEAD+ML GF D+ + K L Q +L S
Sbjct: 123 IVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLFS 182
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT+ V ++R +++DP I +++ +
Sbjct: 183 ATLSPPVQMLARKYLKDPELIEFEEEGI 210
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/85 (36%), Positives = 51/85 (60%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G+D+I QA++GTGKTA F I +++ I + + Q L++ PTRELA Q+ + + +G
Sbjct: 38 EGKDLIGQARTGTGKTAAFGIPMVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKVR 97
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ A GG + R ++ LE H
Sbjct: 98 GIRSVAIYGGQDFRSQVKALEELPH 122
>UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 53 - Arabidopsis thaliana (Mouse-ear cress)
Length = 616
Score = 66.5 bits (155), Expect = 8e-10
Identities = 29/81 (35%), Positives = 52/81 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ S
Sbjct: 229 VAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 288
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP + +++ ++ +P+ +
Sbjct: 289 ATMPSWIRSLTKKYLNNPLTV 309
Score = 59.3 bits (137), Expect = 1e-07
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVI 415
+GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 140 EGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFR 199
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLESGV 505
L+ C GGT + + +RQL+ GV
Sbjct: 200 ESAPSLDTIC--LYGGTPIGQQMRQLDYGV 227
>UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1;
Ustilago maydis|Rep: ATP-dependent RNA helicase DRS1 -
Ustilago maydis (Smut fungus)
Length = 932
Score = 66.5 bits (155), Expect = 8e-10
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHA-NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV-QVIL 681
+V+ TPGR+ D + A + I++ V+DEAD ML GF D+++++ K Q +L
Sbjct: 461 VVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPKGARQTML 520
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQ-KKSLPWKVLNNF 795
SATM DDV ++ R ++ PVR+ V K++ K++ F
Sbjct: 521 FSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEF 559
Score = 50.0 bits (114), Expect = 7e-05
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIR-------ECQALILAPTRELAQQIQKVVI 415
G+D++A A +G+GKTA F I ++++ + + + LILAPTRELA Q V
Sbjct: 370 GKDIVAGAVTGSGKTAAFMIPTIERLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGK 429
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLE 496
++ + + C+GG +V+ +L+
Sbjct: 430 SIAKFTDIRFCLCVGGLSVKSQEAELK 456
>UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase drs1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 754
Score = 66.5 bits (155), Expect = 8e-10
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +1
Query: 508 LVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+V+ TPGR D M + I++ V+DEAD ML GF D+++++ + Q +L
Sbjct: 383 IVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLF 442
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVL 786
SATM D V ++ R + PVR+ V K K+L
Sbjct: 443 SATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLL 476
Score = 53.2 bits (122), Expect = 8e-06
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V +
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355
Query: 428 HLNAKCHACIGGTNVREDIRQL 493
+ CIGG +++ ++L
Sbjct: 356 FTDIMVCLCIGGLSLKLQEQEL 377
>UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7;
Ascomycota|Rep: ATP-dependent RNA helicase DBP5 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 504
Score = 66.5 bits (155), Expect = 8e-10
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +1
Query: 490 TGEWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSAD 666
TG ++VVGTPG V D+I RR + +KL V+DEAD ML +G +Q V ML
Sbjct: 211 TGVKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNMLPKT 270
Query: 667 VQVILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWK 780
+Q +L SAT PD V + F ++ ++++ L K
Sbjct: 271 IQTLLFSATFPDHVKSYAEKFAPQANQMKLRQQELTVK 308
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALG 424
R++IAQ+QSGTGKT F ++IL ++D + QAL LAP+RELA+QIQ V+ ++G
Sbjct: 136 RNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIG 191
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 66.1 bits (154), Expect = 1e-09
Identities = 28/88 (31%), Positives = 52/88 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L++ TPGR D + R + + +K+ LDEADEML GF++ + + K + + Q +L S
Sbjct: 125 LIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQTVLFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT+P + +++ + +D + V K++
Sbjct: 185 ATLPPFIKKIASKYQKDTKILQVPVKNI 212
Score = 64.5 bits (150), Expect = 3e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDH 430
+G DVI QAQ+GTGKT F I I+++I+ I++ Q+LIL PTREL Q+ +++ L +
Sbjct: 39 KGHDVIGQAQTGTGKTFAFGIPIIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFY 98
Query: 431 LNAKCHACIGGTNVREDIRQLESGVH 508
+ GG + + R LE+ H
Sbjct: 99 QEIRIAVVYGGESYTKQFRALEAKPH 124
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 66.1 bits (154), Expect = 1e-09
Identities = 28/87 (32%), Positives = 55/87 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D+I ++A + ++++ VLDEAD+ML GF + + +++ + Q + S
Sbjct: 128 ILIATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQTLFFS 187
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP + E+ + +PV++ V +S
Sbjct: 188 ATMPKAIKELVSGYCNNPVQVSVTPES 214
Score = 64.9 bits (151), Expect = 2e-09
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATF---SISILQQIDTSI--RECQALILAPTRELAQQIQKVVIA 418
+GRD++ AQ+GTGKTA F SI L++ D I + C+ L+LAPTREL QI
Sbjct: 38 EGRDLLGIAQTGTGKTAAFMLPSIDRLREADNRIPFKSCRMLVLAPTRELVSQIAASAKD 97
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESG 502
G K + +GGT+V +D +L G
Sbjct: 98 YGALAGLKVQSIVGGTSVNKDRNKLHRG 125
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 66.1 bits (154), Expect = 1e-09
Identities = 31/98 (31%), Positives = 55/98 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGR+ D + + L + +K VLDEADEML GF D + + Q L S
Sbjct: 146 VIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQRALFS 205
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTL 801
ATMP + +V++ ++++ + ++ ++ + + F L
Sbjct: 206 ATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVL 243
Score = 61.3 bits (142), Expect = 3e-08
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
AL G ++ AQ+GTGKTA F++ +L +ID ++ E Q L+LAPTRELA Q+ +
Sbjct: 57 ALLAGNHLLGVAQTGTGKTAAFALPLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYA 116
Query: 425 DHL-NAKCHACIGGTNVREDIRQLESG 502
N GG + IR L+ G
Sbjct: 117 SKFRNFHVLPIYGGQDFSPQIRGLKRG 143
>UniRef50_Q014T4 Cluster: Chromosome 07 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 07 contig 1, DNA
sequence - Ostreococcus tauri
Length = 506
Score = 66.1 bits (154), Expect = 1e-09
Identities = 31/98 (31%), Positives = 60/98 (61%)
Frame = -2
Query: 819 ILLIQLQCKIV*YLPG*ALLLYKYAYRISHKASRYFQYIIRHGSRE*YDLNIS*QHLEDI 640
+ L+ + +++ G + L + A+R+ H+ +R + + R E +LN+ + ED+
Sbjct: 190 LFLVDVDVELLNTFKGEFVTLDQNAHRLGHELARDLERLRRKRRGENTNLNLRREQGEDV 249
Query: 639 MDLVLETSGQHFISFIKNKKFDGVGMKRTTSYHIIYTT 526
+DL+LETSG+HFI F+K+K D V ++ T+ H++ +T
Sbjct: 250 VDLILETSGKHFIGFVKSKDLDVVALQSATTKHVVNST 287
Score = 40.3 bits (90), Expect = 0.057
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = -1
Query: 508 MNTTLQLANIFTDIGATNASMAFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACI 335
++T+L+ A IFT+ +A +A ++V+ + H LL+LLGQL QD+ L + +
Sbjct: 294 VDTSLEDAGIFTNGRTADARVALHLKVVAEGAHDLLDLLGQLPRRRQDERLALGDGVV 351
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 66.1 bits (154), Expect = 1e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E +VV TPGR+ D I R + +++ VLDEAD ML GF D + ++ +D Q
Sbjct: 117 ERADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQT 176
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQ 759
++ SAT+ D+ +S +M +P ++ +
Sbjct: 177 MMFSATVSKDIQYLSSKYMNNPSKVFAK 204
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G+D+I A +G+GKT F I+Q+I+ +AL+L PTRELA+Q+Q + H
Sbjct: 38 EGKDIIGGAATGSGKTLAFGCGIIQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSRHK 96
Query: 434 NAKCHACIGGTNVREDIRQLE 496
+ GG + IRQLE
Sbjct: 97 QLRVAPIYGGVAINPQIRQLE 117
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 66.1 bits (154), Expect = 1e-09
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDT------SIRECQALILAPTRELAQQIQK 406
A+ +GRD++A AQ+GTGKTA F++ +LQ + T R +ALIL PTRELA QI +
Sbjct: 34 AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
V +LN + GG ++ + +L GV
Sbjct: 94 NVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV 126
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+ + A+ + +++ VLDEAD ML GF I V L A Q +L S
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT DD+ ++ + +P+ I V +++
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRN 214
>UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;
n=3; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 29 - Oryza sativa subsp. japonica (Rice)
Length = 851
Score = 66.1 bits (154), Expect = 1e-09
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Frame = +1
Query: 508 LVVGTPGR-VYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++ TPGR V+ + L+ T++ V DEAD + S G Q+HD+ LS Q +L
Sbjct: 172 IIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLF 231
Query: 685 SATMPDDVLEVSRCFMRDP--VRILVQKKSLPWKVLNNFTLQ 804
SAT+P + + ++ +RDP VR+ + KK P L FTL+
Sbjct: 232 SATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFFTLR 273
Score = 53.2 bits (122), Expect = 8e-06
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 430
G D+ A A++G+GKTA F + ++Q++ + +ALIL+PTR+LA Q K LG
Sbjct: 86 GHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKF 145
Query: 431 LNAKCHACIGGTNVREDIRQL 493
+ K +GG ++ +L
Sbjct: 146 TDLKISLIVGGDSMESQFEEL 166
>UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20;
Ascomycota|Rep: ATP-dependent RNA helicase DBP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 523
Score = 66.1 bits (154), Expect = 1e-09
Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV-QVILL 684
+VV TPGR+ D++ ++ + + VLDEAD ML +GF++ I ++ + A Q ++
Sbjct: 234 VVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMF 293
Query: 685 SATMPDDVLEVSRCFMRDPVRILV 756
+AT P +V E++ FM +P+++ +
Sbjct: 294 TATWPKEVRELASTFMNNPIKVSI 317
Score = 56.8 bits (131), Expect = 6e-07
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 421
L G+DV+ A++G+GKT F + + + D R Q L+++PTRELA QI +I L
Sbjct: 146 LLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVL 205
Query: 422 GDHLNAKCHACIGGTNVREDIRQLE 496
D + +C GG E QL+
Sbjct: 206 TDKVGMQCCCVYGGVPKDEQRIQLK 230
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGD 427
+G+D++A AQ+GTGKTA F + I+Q + R ALIL PTRELAQQ+ + +
Sbjct: 43 EGKDLLAAAQTGTGKTAAFGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAE 102
Query: 428 HLNAKCHACIGGTNVREDIRQLESG 502
H + + GGT++ +LE G
Sbjct: 103 HTDLRIVCVYGGTSIGVQKNKLEEG 127
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/87 (31%), Positives = 45/87 (51%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E +++ TPGR+ D + ++ + + VLDEAD ML GF + + + L D Q+
Sbjct: 126 EGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQI 185
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILV 756
+L SAT + ++ M PV + V
Sbjct: 186 MLFSATFEKRIKTIAYKLMDSPVEVEV 212
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/106 (29%), Positives = 62/106 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D+ +AL + +K +++DEAD+ML GF ++ + + L +Q+++ S
Sbjct: 125 IVIGTPGRILDLFKEQALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEKLQMMVFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KNGS 825
AT+P+ + + +M +P V K K + + T+ + ++ S
Sbjct: 185 ATIPEKLQPFLKKYMNNPRYAHVDPKQQTAKKIVHHTVPVKHRDRS 230
Score = 63.3 bits (147), Expect = 7e-09
Identities = 27/51 (52%), Positives = 41/51 (80%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQK 406
+GRD+I Q+Q+GTGKT +F + I+Q ++ ++E QA+I+APTRELA QI +
Sbjct: 38 KGRDIIGQSQTGTGKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAWQIHE 88
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/87 (34%), Positives = 52/87 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D++ + + N +++ VLDEAD ML GF I + +L A Q ++ S
Sbjct: 126 VLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT D++ E+++ + PV I V ++
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRN 212
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVV 412
A+ G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 34 AVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESV 93
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESGV 505
G +L + GG + I++L GV
Sbjct: 94 ETYGKYLPLRSAVVFGGVPINPQIQKLRHGV 124
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVV 412
A+ +G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 38 AILEGQDVMAAAQTGTGKTAGFTLPLLEILSKGENAQSNQVRALVLTPTRELAAQVAESV 97
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESG 502
G HL+ K GG + + L G
Sbjct: 98 KNYGQHLSLKSTVVFGGVKINPQMMALRRG 127
Score = 59.7 bits (138), Expect = 9e-08
Identities = 26/87 (29%), Positives = 52/87 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D+ ++A+ + +++ VLDEAD ML GF I + +L Q +L S
Sbjct: 130 ILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQNLLFS 189
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT ++ ++++ + +P+ I V ++
Sbjct: 190 ATFSPEIRQLAKGLVNNPIEISVTPRN 216
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/84 (36%), Positives = 51/84 (60%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D + RR + + ++ VLDEAD ML GF + + + + + L S
Sbjct: 134 IVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGLFS 193
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQ 759
AT+ +V+++S + RDPV I+V+
Sbjct: 194 ATISREVMDISWVYQRDPVEIVVR 217
Score = 60.5 bits (140), Expect = 5e-08
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
+DVIA+A +GTGKT F I +++ ID QAL+LAPTRELA QIQ + L +
Sbjct: 50 KDVIAKAPTGTGKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEG 109
Query: 440 KCHACI-GGTNVREDIRQLE 496
C+ GG + + I L+
Sbjct: 110 VRSVCLYGGAPIEKQITTLK 129
>UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable
ATP-dependent RNA helicase - Lentisphaera araneosa
HTCC2155
Length = 482
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++ TPGR+ D+ + L++N I + V+DEAD + GF++ + + K L VQ +L S
Sbjct: 126 VISATPGRLIDIKEQGLLNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQTVLCS 185
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT DD+ S+ ++ PV I
Sbjct: 186 ATFTDDIKNFSKTLLKKPVII 206
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QG+D + +A++GTGKTA F+I LQ + ++ Q LIL P REL +QI + I LG L
Sbjct: 41 QGQDALVRAKTGTGKTAAFAIPALQHLRAEVQHPQVLILTPGRELCKQISQEFIKLGKGL 100
Query: 434 -NAKCHACIGG 463
N + GG
Sbjct: 101 ENFRVAEVTGG 111
Score = 33.9 bits (74), Expect = 5.0
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI--KDAMLSLK 278
F D+ LK+ +L IY G++KP+ IQ +++ + +DA++ K
Sbjct: 7 FQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAK 50
>UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein;
n=7; Flavobacteria|Rep: DEAD/DEAH box helicase domain
protein - Flavobacterium johnsoniae UW101
Length = 450
Score = 65.7 bits (153), Expect = 1e-09
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E ++VGTPGR D+ + + + V+DE DEML+ GF+ Q+ +F M+ Q
Sbjct: 120 EGVDILVGTPGRTMDLALDAVVRFDETQKLVIDEFDEMLNLGFRPQLTSLFAMMKTKRQN 179
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFT 798
IL SATM D+V ++ + P + + P + + FT
Sbjct: 180 ILFSATMTDEVDDILNDYFDFPEEVTLAPSGTPLEKITQFT 220
Score = 50.0 bits (114), Expect = 7e-05
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +2
Query: 242 NALHQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIA 418
+ + GRD++ AQ+GTGKT + + +L+ T + ++L PTREL Q+ + V
Sbjct: 34 SVIMSGRDMMGIAQTGTGKTFAYLLPLLKLYKFTHTNTPKIVVLVPTRELVVQVVEEVEK 93
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
L +++ K GG N+ + + GV
Sbjct: 94 LTKYMSVKTLGIYGGVNINTQKKAVYEGV 122
>UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinekea
sp. MED297|Rep: ATP-dependent RNA helicase - Reinekea
sp. MED297
Length = 534
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQVIL 681
++V TPGR+ D + R+A+ + I++ ++DEAD ML GF I + + + + Q +L
Sbjct: 155 ILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGFIPDIKTIVRATPRTENRQTLL 214
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQKK 765
SAT D+L +++ + DPVR+ V+ K
Sbjct: 215 FSATFSQDILNLAQRWTNDPVRVEVEPK 242
Score = 56.4 bits (130), Expect = 8e-07
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIA 418
G D I +AQ+GTGKTA F I+ + + + + E +ALILAPTRELA QI + A
Sbjct: 64 GHDCIGKAQTGTGKTAAFLITAITDLLEHRLEEQYVGEPRALILAPTRELALQIAEDAKA 123
Query: 419 LGDHLNAKCHACIGGTNVREDIRQL 493
L + K A +GG + + +QL
Sbjct: 124 LTKYSRLKVAAVVGGMDFDKQKQQL 148
>UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase -
Plasmodium falciparum
Length = 576
Score = 65.7 bits (153), Expect = 1e-09
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Frame = +1
Query: 478 RYSPTGEWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEM--LSRGFKDQIHDVFK 651
RY+ +G + + VGTPG+ D + R+ + IKLFVLDEAD++ + Q+ + +
Sbjct: 269 RYNKSGGY-QIYVGTPGKTLDFLKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVETIKR 327
Query: 652 MLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTL 801
L Q++L SAT D V + + F +I V+++ L K + + L
Sbjct: 328 FLPRSCQILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYL 377
Score = 57.6 bits (133), Expect = 4e-07
Identities = 28/65 (43%), Positives = 44/65 (67%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
L +++IAQ+Q+G+GKT TF I++L +I+ ++ QA+ + PTREL+QQ VV
Sbjct: 195 LSSNKNLIAQSQNGSGKTLTFVIAMLCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTK 254
Query: 428 HLNAK 442
+LN K
Sbjct: 255 YLNVK 259
>UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized protein
- Emericella nidulans (Aspergillus nidulans)
Length = 1676
Score = 65.7 bits (153), Expect = 1e-09
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++ TPGR D + A +T+++ VLDEAD ML GF D+++++ + Q +L
Sbjct: 914 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLF 973
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKK 765
SATM D V ++ R + PVR++V K
Sbjct: 974 SATMTDSVDKLIRVGLNRPVRLMVDTK 1000
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
G+D++ A +G+GKTA F + IL+++ + + IL PTRELA Q V L
Sbjct: 827 GKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLAT 886
Query: 428 HLNAKCHACIGGTNVRE 478
+ + +GG ++RE
Sbjct: 887 YTDITFCQLVGGFSLRE 903
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 65.7 bits (153), Expect = 1e-09
Identities = 36/85 (42%), Positives = 49/85 (57%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
Q RDVI AQ+G+GKTA F+I ILQ + + + A +LAPTRELA QI + V ALG +
Sbjct: 140 QARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTI 199
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ +GG ++ L H
Sbjct: 200 GVRSATIVGGMDMMSQSIALSKRPH 224
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++V TPGR+ D + + ++ V+DEAD +L F I + + + + + +L
Sbjct: 225 VIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLF 284
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKK 765
SATM V ++ R +++PVR+ V K
Sbjct: 285 SATMTTKVAKLQRASLKNPVRVEVDTK 311
>UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Pseudomonas putida (strain KT2440)
Length = 398
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQV 675
C ++V TPGR+ D R +H + +++ VLDEAD ML GF Q+ + + ++ Q
Sbjct: 136 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 195
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
+L SAT DDV+ +++ + +P + ++ +++
Sbjct: 196 LLFSATFTDDVMNLAKQWTTNPAIVEIEPENV 227
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTS-------IRECQALILAPTRELAQQIQKVV 412
+G+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K
Sbjct: 45 RGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDA 104
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLES 499
AL + + +GG + + ++ LE+
Sbjct: 105 AALTKYTGLNVMSFVGGMDFDKQLKALEA 133
>UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;
n=11; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
30 - Oryza sativa subsp. japonica (Rice)
Length = 666
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ DM+ + + VLDEAD ML GF+ QI + + D Q + S
Sbjct: 377 IVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWS 436
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P +V ++R F+++P ++++ L
Sbjct: 437 ATWPREVESLARQFLQNPYKVIIGSPDL 464
Score = 50.8 bits (116), Expect = 4e-05
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIA 418
+GRD+I AQ+G+GKT ++ + L + R Q LILAPTRELA QIQ+
Sbjct: 287 KGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGK 346
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
G + + GG IR L GV
Sbjct: 347 FGSYSRTRSTCIYGGAPKGPQIRDLRRGV 375
>UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;
Fungi/Metazoa group|Rep: ATP-dependent RNA helicase
drs-1 - Neurospora crassa
Length = 829
Score = 65.7 bits (153), Expect = 1e-09
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHA-NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+V+ TPGR D + A A +TI++ VLDEAD ML GF D+++++ L Q +L
Sbjct: 417 VVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLF 476
Query: 685 SATMPDDVLEVSRCFMRDPVRILV--QKKS 768
SATM V + R + PVRI+ QKK+
Sbjct: 477 SATMTSSVDRLIRAGLNKPVRIMADSQKKT 506
Score = 54.0 bits (124), Expect = 4e-06
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
G+DV+ A +G+GKTA F + IL+++ + + +IL PTRELA Q V + L
Sbjct: 330 GKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLAS 389
Query: 428 HLNAKCHACIGGTNVR 475
H + K +GG +++
Sbjct: 390 HTDIKFCLAVGGLSLK 405
Score = 33.5 bits (73), Expect = 6.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+ +F +M+L +LRG+ + GF KP+ IQ + I
Sbjct: 292 MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTI 324
>UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4;
Protostomia|Rep: ATP-dependent RNA helicase bel -
Drosophila melanogaster (Fruit fly)
Length = 798
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML----SADV 669
C L+V TPGR+ DMITR + I+ VLDEAD ML GF+ QI + + L +
Sbjct: 429 CHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQR 488
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILV 756
Q ++ SAT P + E++ F+ + + + V
Sbjct: 489 QTLMFSATFPKQIQELASDFLSNYIFLAV 517
Score = 51.2 bits (117), Expect = 3e-05
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQ-------ALILAPTRELA 391
GRD++A AQ+G+GKTA F + IL Q+ S R+ L+LAPTRELA
Sbjct: 332 GRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELA 391
Query: 392 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
QI + + GG N E +R+L+ G H
Sbjct: 392 TQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCH 430
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C + VG PGR+ +I + L ++LFVLDEAD+++ F+ I+ +F L QVI
Sbjct: 115 CQIAVGAPGRIRHLIDKGFLKVENVRLFVLDEADKLMETSFQKDINYIFSKLPLSKQVIA 174
Query: 682 LSATMPDDVLEVSRCFMRDPVRI 750
SAT P D+ + +M PV +
Sbjct: 175 SSATYPGDLEIFLQTYMCSPVLV 197
Score = 64.5 bits (150), Expect = 3e-09
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G D+I +A+SGTGKT F I L+ ID I Q LILAPTRE+A QI +V ++G +
Sbjct: 33 GFDLIMRAKSGTGKTLVFCIISLEMIDIDISSVQVLILAPTREIAVQIAQVFSSVGCEIK 92
Query: 434 NAKCHACIGGTNVREDIRQLES 499
+ K IGG + D +++ +
Sbjct: 93 DLKVEVFIGGLAIENDKKKVNN 114
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ D+I++ + +++ FVLDEAD ML GF I + K+L A Q + S
Sbjct: 124 ILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLFFS 183
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATMP ++ ++ + P ++ V S
Sbjct: 184 ATMPPEIETLANSMLTKPEKVEVTPAS 210
Score = 64.1 bits (149), Expect = 4e-09
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRE-CQALILAPTRELAQQIQKVVIAL 421
L QG+D++ AQ+GTGKTA FSI ILQ++ T R+ +AL+L PTRELA QI + A
Sbjct: 35 LLQGKDLLGCAQTGTGKTAAFSIPILQKLYKTDHRKGIKALVLTPTRELAIQIGESFEAY 94
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G + K GG + L SG+
Sbjct: 95 GRYTGLKHAVIFGGVGQKPQTDALRSGI 122
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/84 (36%), Positives = 53/84 (63%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G+DVIA++ +GTGKT +++ +L++I + QA+ILAP+REL QI +V+
Sbjct: 41 GKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSE 100
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ + IGG NV++ + +L+ H
Sbjct: 101 LRAASLIGGANVKKQVEKLKKHPH 124
Score = 57.6 bits (133), Expect = 4e-07
Identities = 29/99 (29%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++VGTPGRV+++I + L + +K VLDE D+++ ++ + + K D Q++ S
Sbjct: 125 IIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFS 184
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQK-KSLPWKVLNNFTL 801
AT+ + +V R ++P + VQ+ K+ KV + + +
Sbjct: 185 ATLKKETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLI 223
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 65.3 bits (152), Expect = 2e-09
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIA 418
GRD+I +AQ+GTGKTA F I++LQ++ + E +ALILAPTRELA QI K
Sbjct: 135 GRDIIGKAQTGTGKTAAFLITVLQKLLTVKPEERFASEPRALILAPTRELAMQIAKDADG 194
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
L + + +GG + + QLE+ V
Sbjct: 195 LSKYADLNIVTVLGGVDYDKQKEQLENEV 223
Score = 52.0 bits (119), Expect = 2e-05
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADV 669
E +VV TPGR+ D + + ++ + +++ V+DEAD ML GF + + + +
Sbjct: 222 EVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKSIR 281
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
Q L SAT P DV+ +S + P ++ ++ +S+
Sbjct: 282 QTQLFSATYPYDVVALSESWTYKPEQVEIEPESV 315
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDH 430
D++A AQ+GTGKTA F++ +LQ++ T ++ ++LI+ PTRELA Q+ V
Sbjct: 40 DLLAVAQTGTGKTAAFTLPLLQRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQ 99
Query: 431 LNAKCHACIGGTNVREDIRQLESGV 505
LN + A GG + I QL+ GV
Sbjct: 100 LNIRSFAVYGGVRIEPQIAQLQEGV 124
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/87 (34%), Positives = 46/87 (52%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E +++ TPGR+ D+ +RALH +++ V DEAD ML GF D + + +L Q
Sbjct: 122 EGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQT 181
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILV 756
+L SAT + +R + P I V
Sbjct: 182 LLFSATFSKQIKHFAREMLNAPKTIEV 208
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 65.3 bits (152), Expect = 2e-09
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 409
A+ +G DV+A AQ+GTGKTA F++ ILQ+ + +ALIL PTRELA Q+
Sbjct: 34 AIRRGEDVLASAQTGTGKTAAFALPILQKMHERPMTVQHSNARALILTPTRELAAQVADN 93
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESG 502
+ A H+N GG + ++L+ G
Sbjct: 94 ISAYSKHMNISVLTIYGGMKMATQAQKLKQG 124
Score = 51.2 bits (117), Expect = 3e-05
Identities = 27/87 (31%), Positives = 45/87 (51%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ + I L + ++ VLDEAD ML GF I + + ++ Q +L S
Sbjct: 127 IIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNLLFS 186
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT V +++ + P I K++
Sbjct: 187 ATFSTAVKKLANDMLDKPKIISADKQN 213
>UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=4;
Neisseria|Rep: Putative ATP-dependent RNA helicase -
Neisseria meningitidis serogroup C / serotype 2a (strain
ATCC 700532 /FAM18)
Length = 483
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/85 (36%), Positives = 49/85 (57%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C +VV T GR+ D + ++ + N +++ VLDEAD ML GF D I + +ML Q +L
Sbjct: 156 CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLL 215
Query: 682 LSATMPDDVLEVSRCFMRDPVRILV 756
SAT + ++++ FM P + V
Sbjct: 216 FSATFSAPIRKLAQDFMNAPETVEV 240
Score = 50.0 bits (114), Expect = 7e-05
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVV 412
G D++A AQ+GTGKTA F + L+++ ++ + L+L PTRELA QI + V
Sbjct: 66 GHDLLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNV 125
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESG 502
+ +L + GG N+ + L +G
Sbjct: 126 QSYIKNLPLRHTVLFGGMNMDKQTADLRAG 155
>UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 487
Score = 65.3 bits (152), Expect = 2e-09
Identities = 28/83 (33%), Positives = 48/83 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ +R + + + VLDEAD M+ GF++ + +F + Q +L S
Sbjct: 182 MVVATPGRLMDLLDKRIITLDVCRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFS 241
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP + ++ + PV + V
Sbjct: 242 ATMPKKIQNFAKSALVKPVTVNV 264
Score = 44.4 bits (100), Expect = 0.004
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 14/102 (13%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQI 400
A+ GRD+I A +G+GKT F++ I+ Q+ + + +I+ P+RELA+Q
Sbjct: 80 AVLTGRDMIGIAFTGSGKTLVFTLPIIMFSLEQEKAMPFQRNEGPYGMIVVPSRELARQT 139
Query: 401 QKVVIALGDHLNA------KCHACIGGTNVREDIRQLESGVH 508
+V+ L A + + CIGG++++E ++ GVH
Sbjct: 140 FEVITHFSRALEAHGFPSLRTNLCIGGSSIKEQSDAMKRGVH 181
>UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_146,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 566
Score = 65.3 bits (152), Expect = 2e-09
Identities = 29/83 (34%), Positives = 53/83 (63%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ DM+ ++ ++ + + VLDEAD ML + F+ +I ++ + + Q +L S
Sbjct: 252 IVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNILEHFTGPRQTMLFS 311
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT+P + E ++ + DP+ I V
Sbjct: 312 ATLPKKIQEFTKQTLVDPLVINV 334
Score = 36.3 bits (80), Expect = 0.93
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSI-SILQQIDTSIRECQ-------ALILAPTRELAQQI 400
A+ GRD+I A SG GKT F + ++LQ I+ ++ ALIL P+ ELA
Sbjct: 150 AVLMGRDIIGVAPSGQGKTLVFLLPALLQCIEEEMKMPVIRGEGPFALILLPSHELAILT 209
Query: 401 QKVVIALGDHLNAK------CHACIGGTNVREDIRQLESGVH 508
++ K C IGG ++ ++ + +GVH
Sbjct: 210 YELAKQYCQKFQKKGFPAIHCLLGIGGMDMSSQLQSIRNGVH 251
>UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DRS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 752
Score = 65.3 bits (152), Expect = 2e-09
Identities = 29/84 (34%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+V+ TPGR D I A + +++++ V+DEAD ML GF+D+++++ +L ++ Q +L
Sbjct: 356 IVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLF 415
Query: 685 SATMPDDVLEVSRCFMRDPVRILV 756
SATM + + ++ PVRI++
Sbjct: 416 SATMNSKIKSLVSLSLKKPVRIMI 439
Score = 51.2 bits (117), Expect = 3e-05
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
G+D+IA A +G+GKTA F I I++++ I + ++L PTRELA Q+ V +
Sbjct: 268 GKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIAR 327
Query: 428 HLNAKCHA-CIGGTNVREDIRQLES 499
++ +GG N+R+ + L+S
Sbjct: 328 FVSGITFGLAVGGLNLRQQEQMLKS 352
>UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|Rep:
MGC114699 protein - Xenopus laevis (African clawed frog)
Length = 758
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++ TPGR+ D + + N I++ +LDEAD ML F++Q+ ++ ++ S Q +L
Sbjct: 305 VLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQTLLF 364
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SATM ++V +++ +R+PVRI V +
Sbjct: 365 SATMSEEVKDLASVSLRNPVRIFVNSNT 392
Score = 54.0 bits (124), Expect = 4e-06
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIREC---QALILAPTRELAQQIQKVVIALGD 427
G+D+ A A +GTGKTA F + +L+++ RE + L+L PTREL Q+ V L
Sbjct: 218 GKDICACAATGTGKTAAFMLPVLERLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQ 277
Query: 428 HLNAKCHACIGGTNVREDIRQLESG 502
+GG +V+ L SG
Sbjct: 278 FTEVTTCLAVGGLDVKTQEAALRSG 302
Score = 33.1 bits (72), Expect = 8.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
TF DMNL LL+ I A F +P+ IQ+ I
Sbjct: 182 TFQDMNLSRPLLKAISAMSFTQPTPIQKACI 212
>UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=18;
Alphaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Jannaschia sp. (strain CCS1)
Length = 644
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/87 (34%), Positives = 51/87 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+++ TPGR+ D R L N +K+ V+DEAD ML GF I +F ++ Q + S
Sbjct: 135 VLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLFFS 194
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
ATM ++ ++ F+ +P +I V+++S
Sbjct: 195 ATMAPEIERITNTFLSNPEKIEVERQS 221
Score = 56.4 bits (130), Expect = 8e-07
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFS---ISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 427
GRDV+ AQ+GTGKTA+F+ I++L + R ++L+L PTRELA Q+ +
Sbjct: 48 GRDVLGIAQTGTGKTASFTLPMITMLARGRARARMPRSLVLCPTRELAAQVAENFDIYAK 107
Query: 428 HLNAKCHACIGGTNVREDIRQLESGV 505
H+ IGG + +E + ++ GV
Sbjct: 108 HVKLTKALLIGGVSFKEQEQAIDKGV 133
>UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=3;
Thermus thermophilus|Rep: Heat resistant RNA dependent
ATPase - Thermus thermophilus
Length = 510
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
VV TPGR D + + L + +++ VLDEADEMLS GF++++ + Q +L SA
Sbjct: 124 VVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSA 183
Query: 691 TMPDDVLEVSRCFMRDPVRILVQK 762
T+P ++ +M++PV I V K
Sbjct: 184 TLPSWAKRLAERYMKNPVLINVIK 207
Score = 57.2 bits (132), Expect = 5e-07
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIALG 424
+G+D+I QA++GTGKT F++ I +++ S R+ +AL+L PTRELA Q+ + A+
Sbjct: 37 EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96
Query: 425 DHLNAKCHACIGGT 466
HL K A GGT
Sbjct: 97 PHL--KVVAVYGGT 108
>UniRef50_Q00VZ7 Cluster: DEAD/DEAH box helicase, putative; n=2;
Ostreococcus|Rep: DEAD/DEAH box helicase, putative -
Ostreococcus tauri
Length = 686
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++V TPGR++D++ R + L A +L +LDEAD +L GF ++++ L + L
Sbjct: 196 VLVATPGRLWDVMQRSKELDAKKCELLILDEADRLLGMGFMTTLNNIISRLPKQRRTGLF 255
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQ 759
SAT ++V E++R +R+PVR+ V+
Sbjct: 256 SATQTEEVAELARAGLRNPVRVTVR 280
Score = 39.5 bits (88), Expect = 0.100
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKV 409
+DV+ +A +G+GKT F + + + + S+ E A++++PTRELA+QI V
Sbjct: 97 KDVLVEACTGSGKTLAFVLPMTEILSRSVGGMRRHEIGAVVVSPTRELARQIHAV 151
>UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 440
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/93 (32%), Positives = 52/93 (55%)
Frame = +1
Query: 493 GEWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
G +++V TPGR+ D + + + + + VLDEAD ML GF+ +I + AD Q
Sbjct: 149 GGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADRQ 208
Query: 673 VILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
++ SAT P V ++ FM +P+++ + + L
Sbjct: 209 TVMFSATWPQSVQSLASEFMCNPIKVRIGAEGL 241
Score = 52.4 bits (120), Expect = 1e-05
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIAL 421
G D++ A +G+GKT F + L QI + C+ L+LAPTRELAQQ KV
Sbjct: 64 GHDMVGIAATGSGKTLAFGMPALTQIHSQ-PPCKPGQPICLVLAPTRELAQQTAKVFDDA 122
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G+ +C GG E Q+++G
Sbjct: 123 GEASGVRCVCVYGGAPKYEQKAQMKAG 149
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 872,956,733
Number of Sequences: 1657284
Number of extensions: 19078873
Number of successful extensions: 58223
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 53481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57343
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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