Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021824
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 142 4e-35
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 135 6e-33
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 88 2e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 2e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 66 4e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 65 1e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 64 2e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 64 2e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 64 3e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 60 5e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 7e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 2e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 6e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 8e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 3e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 6e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 52 1e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 52 1e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 51 2e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 49 7e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 46 5e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 7e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 7e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.007
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.46
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.4
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.2
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.3
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 27 4.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 4.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 5.6
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.6
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 7.5
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 7.5
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 26 7.5
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 7.5
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.9
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 9.9
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 142 bits (345), Expect = 4e-35
Identities = 65/83 (78%), Positives = 78/83 (93%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 440 KCHACIGGTNVREDIRQLESGVH 508
+CHACIGGT VR+D+ L++GVH
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVH 139
Score = 132 bits (318), Expect = 8e-32
Identities = 62/96 (64%), Positives = 78/96 (81%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV+DMI RRAL + +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLS
Sbjct: 140 VVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLS 199
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
ATMP DVLEV+ FMRDP+RILV+K L + + F
Sbjct: 200 ATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQF 235
Score = 82.2 bits (194), Expect = 8e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +3
Query: 105 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
Score = 33.1 bits (72), Expect = 0.049
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQFY+A+E EEWK
Sbjct: 231 GIKQFYVAVEKEEWK 245
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 135 bits (327), Expect = 6e-33
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
N +CHACIGGT+V DI++L+ G H
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQH 141
Score = 104 bits (250), Expect = 1e-23
Identities = 47/96 (48%), Positives = 70/96 (72%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V GTPGRV DMI RR L +K+ +LDEADE+L++GFK+QI+D+++ L QV+++S
Sbjct: 142 VVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVS 201
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+P DVLE++ F +PVRILV++ L + L +
Sbjct: 202 ATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQY 237
Score = 58.8 bits (136), Expect = 9e-10
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 105 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57
Score = 29.9 bits (64), Expect = 0.46
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
G+KQ++IA+E EEWK
Sbjct: 233 GLKQYFIAVEKEEWK 247
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 87.8 bits (208), Expect = 2e-18
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H+N
Sbjct: 81 GRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN 140
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
K GGT +R+DI +L VH
Sbjct: 141 VKVMVTTGGTTLRDDIIRLNDTVH 164
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV D+ + + FV+DEAD++LS F I + + Q+ L S
Sbjct: 165 IVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYS 224
Query: 688 ATMP 699
AT P
Sbjct: 225 ATFP 228
Score = 42.3 bits (95), Expect = 8e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 57 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 224
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 225 IQQRAI 242
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/61 (49%), Positives = 46/61 (75%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 440 K 442
K
Sbjct: 214 K 214
Score = 64.1 bits (149), Expect = 2e-11
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 684
+V+GTPG V D++ RR L A IK+FVLDEAD ML +G DQ + +L + Q++L
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLF 292
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKSL 771
SAT + V + + F + I ++ + L
Sbjct: 293 SATFSERVEKYAERFAPNANEIRLKTEEL 321
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 66.5 bits (155), Expect = 4e-12
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +1
Query: 508 LVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+V+ TPGR D M + I++ V+DEAD ML GF D+++++ + Q +L
Sbjct: 383 IVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLF 442
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVL 786
SATM D V ++ R + PVR+ V K K+L
Sbjct: 443 SATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLL 476
Score = 53.2 bits (122), Expect = 4e-08
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V +
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355
Query: 428 HLNAKCHACIGGTNVREDIRQL 493
+ CIGG +++ ++L
Sbjct: 356 FTDIMVCLCIGGLSLKLQEQEL 377
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 150 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.9 bits (151), Expect = 1e-11
Identities = 28/83 (33%), Positives = 47/83 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ + TPGR+ DM+ + + VLDEAD ML GF+ QI + + D Q ++ S
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFS 307
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT P +V ++R ++ D +++ V
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTV 330
Score = 41.1 bits (92), Expect = 2e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIAL 421
GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G + GG IR L GV
Sbjct: 219 GKSSRIRNTCVYGGVPRGPQIRDLIRGV 246
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 239
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 64.5 bits (150), Expect = 2e-11
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK---MLSADV- 669
C L+ TPGR+ D+I R + IK VLDEAD ML GF+ QI + + M S +
Sbjct: 306 CDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEER 365
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILV 756
Q ++ SAT P D+ ++R F++D V + V
Sbjct: 366 QTLMFSATFPRDIQLLARDFLKDYVFLSV 394
Score = 40.3 bits (90), Expect = 3e-04
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LILAPTR 382
GRD++A AQ+G+GKTA F IL Q R +A LILAPTR
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265
Query: 383 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 502
EL QI + + A GG ++R IRQ++ G
Sbjct: 266 ELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 64.5 bits (150), Expect = 2e-11
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-----MLSADV 669
S+++GTPGR+ D+I ++ + + VLDEAD ML GF+ I ++ +
Sbjct: 287 SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSR 346
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
Q + SAT P+ V ++ F++DPV+I + L
Sbjct: 347 QTVFFSATWPESVRALAATFLKDPVKITIGSDEL 380
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGD 427
GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ 261
Query: 428 HLNAKCHACIGGTNVREDIR 487
N K GG E R
Sbjct: 262 GTNLKAVVVYGGAPKSEQAR 281
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 684
+VV TPGR+ ++ + L N++K FVLDE D++L S + I +VF+ QV++
Sbjct: 176 IVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMF 235
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ +++ + + FM++P+ I V ++
Sbjct: 236 SATLSNEIRPICKKFMQNPLEIYVDDET 263
Score = 59.3 bits (137), Expect = 7e-10
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 434 NAKCHACIGGTNVREDI 484
+ + GG N+++D+
Sbjct: 148 DVRTAVFYGGINIKQDM 164
Score = 32.7 bits (71), Expect = 0.065
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 59.7 bits (138), Expect = 5e-10
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +L
Sbjct: 43 EGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL 102
Query: 434 NAKCHACIGGTN-VREDI 484
N K +GG + +R+ I
Sbjct: 103 NLKHALIVGGMDMIRQSI 120
Score = 49.2 bits (112), Expect = 7e-07
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADV 669
+VV TPGR+ D+I IK V+DEAD +LS F D + D F +L S D
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 670 QVILLSATMPDDVLEV 717
Q +L +AT+ D + ++
Sbjct: 188 QTLLFTATVTDAIRQL 203
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 7e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 440 KCHACIGGTNV 472
+ +GG ++
Sbjct: 144 RSVVIVGGMDM 154
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++V TPGR+ D + + +K ++DEAD +L F I + K++ + + +L
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLF 226
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKK 765
SATM V ++ R + PVR+ V K
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSK 253
Score = 31.5 bits (68), Expect = 0.15
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +3
Query: 9 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 188
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 189 GIYAYGFEKPSAIQQRAI 242
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/87 (31%), Positives = 48/87 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR + L ++I+ V DEAD + GF Q+ ++ L Q +L S
Sbjct: 192 IVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFS 251
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKS 768
AT+P +++ ++ ++DPV + + +S
Sbjct: 252 ATLPRTLVDFAKAGLQDPVLVRLDVES 278
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIAL 421
L +GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDF 162
Query: 422 GDHLNAKCHACIGGTNVREDIRQL 493
+ + A +GG ++ E L
Sbjct: 163 SKGTDLRSVAIVGGVSLEEQFSLL 186
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 56.0 bits (129), Expect = 6e-09
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 678
+VV TPGR+ D+++ R + + VLDEAD M GF+ Q+ + + D Q +
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTV 603
Query: 679 LLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
L SAT P + ++R ++ PV I V +S+
Sbjct: 604 LFSATFPRAMEALARKVLKKPVEITVGGRSV 634
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 409
A+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESG 502
LN + GG +++ I L+ G
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRG 541
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 129 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 55.6 bits (128), Expect = 8e-09
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVVI 415
+G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 50 EGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL- 108
Query: 416 ALGDHLNAKCHACIGGTNV 472
+ L A C I NV
Sbjct: 109 ---EKLTAFCSKHIRFINV 124
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/92 (28%), Positives = 47/92 (51%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TP R + L + +K V+DEAD MLS G+ + + + + L Q L+S
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMS 202
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKV 783
AT+ ++ + + R+P + V+ K K+
Sbjct: 203 ATLSKNIASLQKLVCRNPFILAVKDKEASGKL 234
Score = 32.7 bits (71), Expect = 0.065
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.6 bits (123), Expect = 3e-08
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQ 403
L Q +D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Query: 404 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
+ L +C + +GG E Q+ G H
Sbjct: 343 VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAH 377
Score = 48.4 bits (110), Expect = 1e-06
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML---------- 657
+VV TPGR+ D + RR + V+DEAD ML GF+D ++ + L
Sbjct: 378 IVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDG 437
Query: 658 ---------SADVQVILLSATMPDDVLEVSRCFMRDPVRILV 756
S+ Q I+ SAT+P V +++ ++ +PV + +
Sbjct: 438 SILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTI 479
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.8 bits (121), Expect = 6e-08
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIAL 421
+GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++ +
Sbjct: 75 KGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKI 134
Query: 422 GDHLNAKCHACIGGTNVREDIRQL 493
G + IGG N +E+ +L
Sbjct: 135 GRLHSFSAGLIIGGNNYKEEKERL 158
Score = 46.4 bits (105), Expect = 5e-06
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
+++V TPGR+ I + + +++ +LDEAD +L GF+ + + L Q +L
Sbjct: 162 NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTML 221
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQK 762
SAT V +++R +++P I V +
Sbjct: 222 FSATQTKSVKDLARLSLQNPDFISVHE 248
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 52.0 bits (119), Expect = 1e-07
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILL 684
+ +GTP R+ I + L ++ FV+DEAD + GF +Q H + S+++ L
Sbjct: 169 MCIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLF 227
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKK 765
SAT+P V E+++ DP+RI+V K
Sbjct: 228 SATIPSRVEELAKVVTVDPIRIIVGLK 254
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 406
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 52.0 bits (119), Expect = 1e-07
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 430
G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 431 LNAKCHACIGGTNVREDIRQLESGVH 508
N + + GG V++ R L H
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNKHPH 244
Score = 38.7 bits (86), Expect = 0.001
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 669
+VV TPGR++ +I L N IK VLDEAD +L + +++ + ++L +
Sbjct: 245 VVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQR 304
Query: 670 QVILLSATMPD 702
Q + SAT +
Sbjct: 305 QTFIFSATFDE 315
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
S+V+GTPGR+ +M++ + + +++ +LDEAD ++ GF+ + + L + L
Sbjct: 134 SVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLF 191
Query: 685 SATMPDDVLEVSR-CFMRDPVRILV 756
SATM D V + +R+ VR+ V
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSV 216
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 409
+ +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 49.2 bits (112), Expect = 7e-07
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVI 678
+L+V TPGR+ D + + ++ V+DEAD +L GF+D++ + K+L S + Q +
Sbjct: 213 NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTL 272
Query: 679 LLSATMPDDVLEVSRCFMR 735
L SAT V +++R ++
Sbjct: 273 LFSATQTTKVEDLARISLK 291
Score = 46.0 bits (104), Expect = 7e-06
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALG 424
GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGVH 508
+ + IGG N R + +L GV+
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKLVKGVN 213
Score = 33.1 bits (72), Expect = 0.049
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 254
+E F D+ L E + + I GFE + IQ+R+I P +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLL 124
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 46.4 bits (105), Expect = 5e-06
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Frame = +2
Query: 221 CNPATRNNALHQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 379
C PA N +D +AQ+G+GKT + + I+Q++ T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 380 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVH 508
REL QQI V L + H C+ IGG + + ++ GV+
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVN 271
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
++++GTPGR+ D + AL + ++ VLDE D ++ GF++ + + L + +I
Sbjct: 271 NILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIK 330
Query: 682 LSATMPD-DVLEVSRCFMRDPVRIL 753
++P V + M+D V+ L
Sbjct: 331 KDLSIPSRKVTMLCSATMKDTVKRL 355
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.0 bits (104), Expect = 7e-06
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQVI 678
+L++ TPGR+ D + R L + + F+LDEAD ++ GF + I ++ + + + + +
Sbjct: 165 NLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKL 224
Query: 679 LLSATMPDDVLEVSR 723
SATMP V V R
Sbjct: 225 CFSATMPPKVSNVFR 239
Score = 35.5 bits (78), Expect = 0.009
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +2
Query: 239 NNALHQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQ 403
N + + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129
Query: 404 KVVIALGDHLNAKCHACIGG-TNVRED 481
+ L + IGG + +RE+
Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREE 156
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 433
G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 434 NAKCHACIGGTNVREDIRQL 493
+ A G ++R + QL
Sbjct: 233 GLQVCAWTGQKSLRHETYQL 252
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 660
++V TPGR+ D I + ++ V+DEAD +L + F+D + V +S
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 595 EADEMLSRGFKDQIHDVFKM-LSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
+ D+ +S F I + L + +Q ++ SAT+ D +++ + +P +LVQ K +
Sbjct: 327 DLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDM 386
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.9 bits (79), Expect = 0.007
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 212 KTFCNPATRNNALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 391
KT+ + A N L G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 392 QQIQKVVI 415
Q +K +I
Sbjct: 370 QDQKKSLI 377
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.9 bits (64), Expect = 0.46
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 120 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKD 260
LDT+W V + NL+ + + I + F PS I + MP + D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 117 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 209
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 287 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 403
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 319 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 420
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 94 DLREWTLGHLTPT 132
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -1
Query: 529 DLECPPPMNTTLQLANIFTDIGATNASMAFSIQVITKS 416
D+E PP LQ+AN+ GA + + + ++ ++
Sbjct: 103 DMESPPVQGIRLQMANLLASAGALHKAWSMYWDILERT 140
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 529 RVYDMITRRALHANTIKLFVLDEADEM 609
++ + + R + A+T K+ +LDEAD M
Sbjct: 106 QIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 601 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 711
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 433 QVITKSYHHLLNLLGQLSCGSQDQ 362
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 398 IQKVVIALGDHLNAKCHACIGGTNVRED 481
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 493 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 392
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 244 CLASRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 342
C R CYR+S + +K + + S N Y+
Sbjct: 5 CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 114 QGPFPEVHRNYLDPSMAHFWNPLANL 37
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 639 MDLVLETSGQHFISFIKNKKFDGVGMKRTTSYHI 538
+D V E HF F+KN+ D + +R H+
Sbjct: 476 LDAVYERECNHFKKFVKNELKDSLESQRVDLRHL 509
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 138 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLY 317
++V F+DM++ GI KP + + +++ C+K+ + + P ++ LL L
Sbjct: 190 EIVRLFNDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVKEGI--VHPVTVVDYLLFHLN 247
Query: 318 R 320
R
Sbjct: 248 R 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,576,841
Number of Sequences: 5004
Number of extensions: 78637
Number of successful extensions: 329
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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