Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021824
(826 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 4e-34
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 2e-33
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 89 5e-18
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 81 8e-16
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 81 8e-16
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 74 1e-13
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 64 1e-10
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 64 2e-10
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 63 2e-10
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 63 3e-10
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 7e-10
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 7e-10
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 5e-09
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 58 9e-09
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 56 3e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 55 8e-08
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 54 1e-07
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 52 4e-07
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 50 2e-06
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 48 9e-06
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 46 3e-05
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 46 3e-05
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 46 3e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 9e-05
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 43 3e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 43 3e-04
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 39 0.004
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 36 0.040
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.053
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 33 0.21
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 33 0.28
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 29 3.5
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 29 4.6
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 29 4.6
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.6
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.6
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 6.1
SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7) 28 8.0
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 142 bits (343), Expect = 4e-34
Identities = 69/98 (70%), Positives = 83/98 (84%), Gaps = 6/98 (6%)
Frame = +2
Query: 233 TRNNALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQ 394
T+N+ + RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQ
Sbjct: 114 TKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQ 173
Query: 395 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
QIQKVV+ALGD+++ KCHACIGGTNVRED +LE GVH
Sbjct: 174 QIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGVH 211
Score = 128 bits (308), Expect = 7e-30
Identities = 64/100 (64%), Positives = 76/100 (76%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E +VVGTPGRV+DMI R L+ IKLFVLDEADEMLSRGFKDQI+DVF L VQV
Sbjct: 208 EGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQV 267
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
+LLSATMP DVLEV+ FMRD VRILV+++ + + + F
Sbjct: 268 VLLSATMPTDVLEVTNKFMRDVVRILVKREEVTLEGIKQF 307
Score = 85.4 bits (202), Expect = 5e-17
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +3
Query: 114 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKD 260
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI PC ++
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQE 100
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQF++ +E E+WK
Sbjct: 303 GIKQFFVLVEKEDWK 317
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 140 bits (338), Expect = 2e-33
Identities = 64/85 (75%), Positives = 77/85 (90%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV+ALGD++
Sbjct: 33 KGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDYM 92
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
+ +CHACIGGTN+ EDIR+L+ G H
Sbjct: 93 SVQCHACIGGTNIGEDIRKLDYGQH 117
Score = 113 bits (273), Expect = 1e-25
Identities = 52/96 (54%), Positives = 73/96 (76%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V GTPGRV+DMI RR L +IK+ VLDEADEML++GFK+QI+DV++ L QV+LLS
Sbjct: 118 IVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLS 177
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+P ++LE++ FM DP+RILV++ L + + F
Sbjct: 178 ATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQF 213
Score = 34.7 bits (76), Expect = 0.092
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 204 GFEKPSAIQQRAIMPCIK 257
GFEKPSAIQQRAI P +K
Sbjct: 16 GFEKPSAIQQRAIKPILK 33
Score = 31.5 bits (68), Expect = 0.86
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQF++A+E EEWK
Sbjct: 209 GIKQFFVAVEREEWK 223
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 88.6 bits (210), Expect = 5e-18
Identities = 38/55 (69%), Positives = 49/55 (89%)
Frame = +2
Query: 344 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
+RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G H
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQH 55
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 81.4 bits (192), Expect = 8e-16
Identities = 36/79 (45%), Positives = 57/79 (72%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H+
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMG 143
Query: 437 AKCHACIGGTNVREDIRQL 493
A+ GGT++++DI +L
Sbjct: 144 AQVMVTTGGTSLKDDILRL 162
Score = 62.1 bits (144), Expect = 5e-10
Identities = 28/81 (34%), Positives = 47/81 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGRV D++ ++ + ++ V+DEAD++LS FK + + K L + Q++L S
Sbjct: 175 VIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFS 234
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P V + +R P I
Sbjct: 235 ATFPISVRDFKEKHLRKPYEI 255
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 81.4 bits (192), Expect = 8e-16
Identities = 36/79 (45%), Positives = 57/79 (72%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H+
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMG 143
Query: 437 AKCHACIGGTNVREDIRQL 493
A+ GGT++++DI +L
Sbjct: 144 AQVMVTTGGTSLKDDILRL 162
Score = 62.1 bits (144), Expect = 5e-10
Identities = 28/81 (34%), Positives = 47/81 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGRV D++ ++ + ++ V+DEAD++LS FK + + K L + Q++L S
Sbjct: 175 VIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFS 234
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P V + +R P I
Sbjct: 235 ATFPISVRDFKEKHLRKPYEI 255
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D+IAQA+SGTGKT FS+ L+ + T Q +IL PTRE+A Q++ V+ A+G H +
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
Query: 437 A-KCHACIGGTNVREDIRQLES 499
C IGG ++ ED + L+S
Sbjct: 110 GLACKVFIGGISLEEDKKALKS 131
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/80 (36%), Positives = 51/80 (63%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C + VGTPGRV +I ++ L ++++F+LDEAD++L F+ QI+ +F L + Q++
Sbjct: 132 CHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQMMA 191
Query: 682 LSATMPDDVLEVSRCFMRDP 741
SAT P+ + + +M +P
Sbjct: 192 FSATYPEVLANHLKKYMTEP 211
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F + L LLRG+ GFEKPS IQ +AI
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAI 44
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 64.5 bits (150), Expect = 1e-10
Identities = 34/104 (32%), Positives = 57/104 (54%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++V TPGR+ ++I+R+A+ + V+DE D ML GF+ Q+ + + LS Q +L S
Sbjct: 258 VIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQTMLFS 317
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*KN 819
AT+P + ++ + PV I SLP K + L + K+
Sbjct: 318 ATIPPSIEAMASRLLNAPVFISAGSPSLPTKAVKQLILWVEEKS 361
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 64.1 bits (149), Expect = 1e-10
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQQIQKVVIAL 421
GRD++A AQ+G+GKTA + + +L Q ++ R AL +APTRELA+QI
Sbjct: 516 GRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKF 575
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGVHW 511
DH K C GG +V QLE G H+
Sbjct: 576 SDHTPIKVCVCYGGVSVPYQASQLERGCHF 605
Score = 62.1 bits (144), Expect = 5e-10
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 669
C +VGTPGR+ D ++R ++ +I+ +LDEAD ML GF IH + + +
Sbjct: 603 CHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMTAKESR 662
Query: 670 QVILLSATMPDDVLEVSRCFMR 735
Q ++ SAT PD++ ++ F++
Sbjct: 663 QTLMFSATFPDEIQHLAGSFLK 684
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 63.7 bits (148), Expect = 2e-10
Identities = 33/97 (34%), Positives = 60/97 (61%), Gaps = 4/97 (4%)
Frame = +1
Query: 487 PTGEWCS--LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS-RGFKDQIHDVFKM 654
P G+ C+ +++GTPG + D I + + + +FVLDEAD M++ +G +DQ + K
Sbjct: 215 PRGQKCTDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKS 274
Query: 655 LSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKK 765
L D QV+L SAT +DV++ + + +P+ I ++++
Sbjct: 275 LHKDCQVLLFSATYDEDVMKFAETVVPNPIIIRLRRE 311
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 430
++IAQ+QSGTGKTA F +++L ++D + Q + L+PT ELA+Q KV A+G H
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 36.7 bits (81), Expect = 0.023
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
++F+++ L L RG+Y GF KPS IQ+ A+ + D +++
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNM 145
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 439
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + ALG +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 440 KCHACIGGTNVREDIRQLESGVH 508
KC +GG ++ L H
Sbjct: 62 KCAVIVGGIDMMSQALMLAKKPH 84
Score = 36.3 bits (80), Expect = 0.030
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGF--KDQIHDV 645
+++ TPGR+ D + + T+K V+DEAD +L+ F +D IH V
Sbjct: 85 IIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEDYIHRV 133
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ + TPGR+ DM+ R + VLDEAD ML GF+ QI + + D Q ++ S
Sbjct: 185 ICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWS 244
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
AT P +V ++ F+ D V I V
Sbjct: 245 ATWPKEVQGLAHDFLSDYVHITV 267
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +2
Query: 362 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
L+L PTRELAQQ+Q+V ++G H + GG IR+LE GV
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGV 183
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 61.7 bits (143), Expect = 7e-10
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIH---DVFKMLSADV- 669
C L+V TPGR+ DM+ R + ++I+ VLDEAD ML GF+ QI D M +
Sbjct: 976 CHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPKTGIR 1035
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILVQK 762
Q ++ SAT P ++ ++R F+ + + + V K
Sbjct: 1036 QTLMFSATFPKEIQMLARDFLENYIFLAVGK 1066
Score = 32.7 bits (71), Expect = 0.37
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQI 334
RD++A AQ+G+GKTA F I IL +I
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRI 937
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
F+D++L E LL + G++KP+ +Q+ AI P +K
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI-PIVK 910
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 61.7 bits (143), Expect = 7e-10
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDH 430
G+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK + LG
Sbjct: 318 GKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRF 377
Query: 431 LNAKCHACIGGTNV 472
K +GG +V
Sbjct: 378 TGLKSSVILGGDSV 391
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 603
VV TPGR ++ L ++++ V DEAD
Sbjct: 391 VVATPGRFLHVVMEMELKLSSVEYVVFDEAD 421
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 58.8 bits (136), Expect = 5e-09
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML----SADV 669
C+L+VGTPGR+ D I + + ++ +LDEAD ML GF+ I + + + ++
Sbjct: 839 CNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSER 898
Query: 670 QVILLSATMPDDVLEVSRCFMRD 738
Q ++ SAT P+++ ++ F+ D
Sbjct: 899 QTLMFSATFPEEIQRLAGDFLND 921
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI------DTSIREC---QALILAPTRELAQQIQKV 409
GRDV+A AQ+G+GKTA F + ++ + +S E QA+ +APTRELA QI
Sbjct: 748 GRDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLE 807
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESG 502
+ C GG +V +RQL+SG
Sbjct: 808 ARKFAHGTMLRPVVCYGGVSVSHQLRQLQSG 838
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMS 143
Query: 434 NAKCHACIGGTNVREDIRQLES 499
N K GG N+++D + L++
Sbjct: 144 NIKIAVFFGGINIKKDQQTLKT 165
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 618
+VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 170 IVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMS 143
Query: 434 NAKCHACIGGTNVREDIRQLES 499
N K GG N+++D + L++
Sbjct: 144 NIKIAVFFGGINIKKDQQTLKT 165
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 618
+VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 170 IVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHE----CIPQAILGM 85
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 56.4 bits (130), Expect = 3e-08
Identities = 32/85 (37%), Positives = 47/85 (55%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QGRD I A++G+GKTA F++ ILQ++ A++L PTRELA QI LG +
Sbjct: 43 QGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRPI 102
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
K +GG ++ + L + H
Sbjct: 103 GLKEAVIVGGLDMMKQALSLANKPH 127
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+V+ TPGR+ D I + L+ I+ VLDEAD +L F D + +F + Q +L
Sbjct: 128 VVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLF 187
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQ 759
SAT+ D + E+ + P VQ
Sbjct: 188 SATLTDTMGELQKMSGSQPFSYEVQ 212
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 54.8 bits (126), Expect = 8e-08
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQK 406
Q RD+I A++G+GKTA F+I +L I + + + ALILAPTRELAQQI++
Sbjct: 137 QNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEE 196
Query: 407 VVIALGDHLNAKCHACIGGTN 469
++ G L + + IGG +
Sbjct: 197 EILKFGRPLGIRTVSVIGGAD 217
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 54.4 bits (125), Expect = 1e-07
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQALILAPTRELAQQIQKVVIALG 424
GRDV+ A++G+GKT F I I++ Q TS+ AL+++PTRELA Q +V++ +G
Sbjct: 87 GRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIG 146
Query: 425 DHLNAKCHACIGGTNVREDIRQL 493
+ + IGG +++ + +++
Sbjct: 147 NKHDLSAGLIIGGKDLKNEQKRI 169
Score = 44.8 bits (101), Expect = 9e-05
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
++VV TPGR+ + ++++ VLDEAD +L GF ++ + + L ++ Q +L
Sbjct: 173 NIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTLL 232
Query: 682 LSATMPDDVLEVSRCFMRDPV 744
SAT V +++R ++ V
Sbjct: 233 YSATQTRSVKDLARLSLQSYV 253
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD-----VQ 672
++VGTPGR+ D + + L + +K VLDE D ML GF + + +V A+ Q
Sbjct: 198 VLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAEDREDKPQ 257
Query: 673 VILLSATMPDDVLEVSRCFMR 735
+L SAT+P + ++ +M+
Sbjct: 258 TLLFSATLPPWAVNTAKKYMK 278
Score = 51.6 bits (118), Expect = 8e-07
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Frame = +2
Query: 230 ATRNNALHQGRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELA 391
A+ N ++ G DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA
Sbjct: 101 ASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELA 160
Query: 392 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+Q+ L +L C GG + SG+
Sbjct: 161 KQVGNEFENLKSNLEVYC--IYGGMPYEPQENAINSGL 196
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFS----ISILQQIDTSIRECQ-ALILAPTRELAQQIQKVVIAL 421
GRD+I A++G+GKTA F + I+ Q + + + LI APTREL QQI
Sbjct: 554 GRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRF 613
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G N A GG N E + L+ G
Sbjct: 614 GKAYNIHVVAVFGGGNKYEQSKALQEG 640
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/87 (31%), Positives = 40/87 (45%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
E +VV TPGR+ D + +A + + + V DEAD M GF
Sbjct: 639 EGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGF----------------A 682
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILV 756
+L SAT V + R + DPVR+++
Sbjct: 683 LLFSATFKKKVEHLCRDILVDPVRVVI 709
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = +1
Query: 505 SLVVGTPGRVYDMI--TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 678
+L++ TPGR+ D + T+ L+ N ++ V+DEAD +L GF++++ + ++L + Q +
Sbjct: 696 NLLIATPGRLLDHLQNTQGFLYKN-LQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTV 754
Query: 679 LLSATMPDDVLEVSRCFM-RDPVRI 750
L SAT +V ++++ + R P+ +
Sbjct: 755 LFSATQTKNVEDLAKLSLKRSPLYV 779
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQ---QIDTSIRE-CQALILAPTRELAQQIQKVVI 415
L +GRD++ A++G+GKT F + +++ ++ R +I++PTREL+ Q V
Sbjct: 606 LLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVAR 665
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
L H N +GG N + + +L+ GV+
Sbjct: 666 DLLKHHNFTYGIIMGGVNRKAEAERLQKGVN 696
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Frame = +1
Query: 559 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ---VILLSATMP-DDVLEVSRC 726
L +IK+ VLDEADEML++GFK+QI+DV++ L Q V L ++P + L + C
Sbjct: 31 LDTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQNSYVEYLHESVPKSEPLSSNSC 90
Query: 727 FMRDPV 744
DP+
Sbjct: 91 SPGDPL 96
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 48.0 bits (109), Expect = 9e-06
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 574 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 753
+++ VLDEAD ML GF I V L A Q +L SAT DD+ ++ + +P+ I
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIE 63
Query: 754 VQKKS 768
V +++
Sbjct: 64 VARRN 68
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 48.0 bits (109), Expect = 9e-06
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHD--------VFKM 654
++V TPGR+ DM+T R + VLDEAD M GF+ QI +
Sbjct: 197 IIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKVMRIIDC 256
Query: 655 LSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
+ D Q ++ SAT P + ++R + P+ I V +S+
Sbjct: 257 IRPDRQTVMFSATFPRQMEALARKILDKPIEIQVGGRSV 295
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 347 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 502
R+ A+++ PTRELA QI + N +C GGT + E I +L+ G
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRG 194
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 48.0 bits (109), Expect = 9e-06
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +2
Query: 431 LNAKCHACIGGTNVREDIRQLESGVH 508
++ KCHACIGGTNVRED +LE GVH
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVH 26
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRAL 561
E +VVGTPGRV+DMI R L
Sbjct: 23 EGVHVVVGTPGRVFDMINRGVL 44
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 577 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 756
+ VLDEAD M+ GF++ + +F + Q +L SATMP + ++ + PV + V
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPVTVNV 77
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 657
+V GTPG++ D IT + + +K F+LDEAD +L++G D I ++ +
Sbjct: 138 IVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 577 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 756
+ VLDEAD M+ GF++ + +F + Q +L SATMP + ++ + PV + V
Sbjct: 18 RYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPVTVNV 77
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 44.8 bits (101), Expect = 9e-05
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQIDT--------------SIRECQ-----ALI 367
AL RD+I A++G+GKT F I I+Q I+ S E Q ALI
Sbjct: 164 ALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALI 223
Query: 368 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 496
+APTRELA Q++ ++ + + K A +GG + R L+
Sbjct: 224 MAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLK 266
Score = 34.7 bits (76), Expect = 0.092
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Frame = +1
Query: 544 ITRRALHANTIKLF---VLDEADEMLSRGFKDQIHDVFKML----SADVQVILLSATMPD 702
+T + H + I+L V+DEAD M+ +G +++ + +++ S +++V A P
Sbjct: 327 VTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELIHLKKSGNMEVDQEDAERPS 386
Query: 703 DVLEVSRCFMRDPVRILVQKKSLPWKV 783
+ R R+ ILVQK SL K+
Sbjct: 387 NSSSEKRYIQRN---ILVQKSSLMDKI 410
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 43.2 bits (97), Expect = 3e-04
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 397
G+DV A A +GTGKTA F + IL+++ T + L++ PTRELA Q
Sbjct: 47 GKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 43.2 bits (97), Expect = 3e-04
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKM---LSAD 666
E +VV TPGR+ D+ I V+DE D ML G ++Q+ + + S
Sbjct: 216 EGADVVVATPGRLLDLY--------KITYLVMDEPDRMLGMGMEEQLRKIVGLATGTSRA 267
Query: 667 VQVILLSATMPDDVLEVSRCFMRDPVRILV 756
Q +L SAT+P+ + ++R + +P+ I V
Sbjct: 268 RQTLLWSATLPESLERLARSAVLNPITIQV 297
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 400
GRD+I A++G+GKT +S+ + + T ALIL PTREL QQ+
Sbjct: 109 GRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRR--ALHANTIKLFVLDEADEMLSR---GFKDQIHDVFKMLS-ADV 669
++V TP R+ ++T+ + + ++ +LDEAD++ GF++QI +++ + D+
Sbjct: 259 ILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDI 318
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILV 756
L SAT+ + + E + + + VR+ V
Sbjct: 319 HRGLFSATLSNGIEEWAGLHLDNHVRVTV 347
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 35.9 bits (79), Expect = 0.040
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Frame = +2
Query: 266 VIAQAQSGTGKTATFSISILQQIDTS---------IRECQALILAPTRELAQQIQKVVIA 418
VI AQ+G+GKT + ++ ++ ++ +A I+ P RELA QI K +
Sbjct: 418 VICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKS 477
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
L H + IGG + LES V
Sbjct: 478 LCHHARFRSVGLIGGRKQKWMRDDLESPV 506
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 663
L+V TPG + + L + + V+DEAD M FK ++ +++
Sbjct: 508 LLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILHTINS 559
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 35.5 bits (78), Expect = 0.053
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 619 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 756
GF+ +I + + D Q ++ SAT P V ++ +M DPVR+ V
Sbjct: 2 GFEPEIKKILLDIRPDRQTVMTSATWPPGVQRMADQYMTDPVRVFV 47
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 619 GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKK 765
GF+ I+ + L + L SAT D+V + R +R+PVR+ V++K
Sbjct: 2 GFEASINTILGYLPKQRRTGLFSATQTDEVEALVRAGLRNPVRVTVREK 50
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 33.1 bits (72), Expect = 0.28
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLN 436
+ ++ ++++GTGK+ F +L + R +I+ PTRELA Q + +V LGD
Sbjct: 198 KSLLIKSETGTGKSLVF---LLPSVQDPGRGYGTIIVVPTRELASQMLYEVSRLLGD--K 252
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ + + G ++ + L+ +H
Sbjct: 253 SIVASFVSGVDLSRQEKLLKDSLH 276
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 32.7 bits (71), Expect = 0.37
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 24 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 194
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 195 YAYGFEKPSA 224
GF + A
Sbjct: 79 LLDGFPRTVA 88
>SB_17830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 290 FLTGLER*HRVLDARHYCALLDCRRFFKTIGVYASQQFFFEVH 162
FLT R +++ + RH C D F K Y +FFF+VH
Sbjct: 80 FLTFATRLYKLSEPRHIC--WDETHFGKHANFYIKGEFFFDVH 120
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 520 TPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMP 699
TP + + ++R + A + L V+DEA + L Q+ + + +V+ LSAT
Sbjct: 213 TPQVLQNDLSRGSCAAADVVLLVVDEAHKALGNHSYCQVVREILSYTTNFRVLALSATPG 272
Query: 700 DDVLEVSR 723
DD+ V +
Sbjct: 273 DDIKAVQQ 280
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 63 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 191
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 265 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 323
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 332
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 324 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 375
>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
Length = 325
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 332
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 393
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 332
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 423
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 185
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 186 RG--IYA--YGFEKPSAIQQRAIMPCIKDAMLSLKPSQELEKLLLSLYRFYNK 332
++A +GF K + + + ++ ++D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 329 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 457
Q D++++E IL ELA++IQK++ LN K AC+
Sbjct: 58 QGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 6 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 98
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_39648| Best HMM Match : DUF1110 (HMM E-Value=1.7)
Length = 472
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/73 (24%), Positives = 29/73 (39%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
++ G PG V I + +NT + + D D M S D + ++ D + S
Sbjct: 380 IIDGNPGHVMSTIATDDVTSNTDDIMIEDNPDNMTSNISTDDVTSNDDIMIEDNPDNMTS 439
Query: 688 ATMPDDVLEVSRC 726
DDV + C
Sbjct: 440 NIATDDVTSKTGC 452
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 445 AFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACID 332
A ++Q +TK+Y HL+N+ G +++ T C D
Sbjct: 201 AHALQTLTKAYRHLMNVTGN---RDKEEKANATEQCAD 235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,961,868
Number of Sequences: 59808
Number of extensions: 609362
Number of successful extensions: 2509
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2490
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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