Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021824
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       56   3e-10
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
 Frame = +1

Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI-----HDVFKMLSAD 666
           C ++V TPGR+ D + +  +  ++++  VLDEAD ML  GF   I     H+    L  +
Sbjct: 324 CHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPL-GE 382

Query: 667 VQVILLSATMPDDVLEVSRCFMRD 738
            Q ++ SAT PD+V  ++R F+ +
Sbjct: 383 RQTLMFSATFPDEVQHLARRFLNN 406



 Score = 52.0 bits (119), Expect = 6e-09
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
 Frame = +2

Query: 257 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQKV 409
           GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI + 
Sbjct: 233 GRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQ 292

Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
           ++    +   K     GGT+V     +L +G H
Sbjct: 293 IVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCH 325



 Score = 27.9 bits (59), Expect = 0.12
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 138 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 SQELEKLLLSLYRFYNKSIQAFVNV 356
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 473 GHWCHQCKHGI*HSS 429
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
 Frame = +2

Query: 167 PQRRIVERHIRLWF*KTFC----NPATRNNALHQGRDV-IAQAQSGTGKTATFSISILQQ 331
           P +++    I  WF  TFC    N AT  NA+     +     +    K A +++  ++ 
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEF 580

Query: 332 ID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 472
                 R C      P++  +  +       GD LNA   A +G +N+
Sbjct: 581 YKRRPQRACSTTGGVPSK--SPTLTHSPTMYGDALNANLQAALGDSNM 626


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 627 LETSGQHFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 517
           L+    H I+ I +K F GVG+    S+  I+   W++
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 451 LHWWHQCP 474
           LH WH CP
Sbjct: 470 LHHWHHCP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,573
Number of Sequences: 438
Number of extensions: 5671
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)