Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021824
(826 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 126 1e-29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 126 2e-29
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 123 1e-28
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 119 3e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 113 2e-25
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 82 4e-16
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 82 4e-16
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 79 3e-15
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 79 3e-15
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 77 2e-14
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 77 2e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 74 1e-13
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 74 1e-13
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 71 9e-13
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 71 1e-12
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 71 1e-12
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 69 4e-12
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 69 4e-12
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 69 4e-12
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 69 4e-12
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 69 5e-12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 66 2e-11
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 66 4e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 66 4e-11
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 65 6e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 63 2e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 63 2e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 62 6e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 61 8e-10
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 60 1e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 60 1e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 60 1e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 60 1e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 59 4e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 5e-09
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 58 7e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 58 9e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 58 9e-09
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 58 9e-09
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 58 9e-09
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 57 2e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 56 2e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 56 2e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 56 3e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 56 3e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 56 3e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 56 4e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 4e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 55 5e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 54 9e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 54 2e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 54 2e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 53 3e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 51 8e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 3e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 49 4e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 4e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 3e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 44 1e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 43 3e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 41 9e-04
At2g28600.1 68415.m03476 expressed protein 40 0.002
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 33 0.17
At1g13200.1 68414.m01531 F-box family protein contains F-box dom... 31 0.93
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.6
At3g10020.1 68416.m01202 expressed protein 29 2.8
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta... 29 5.0
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta... 29 5.0
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta... 29 5.0
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 6.5
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 6.5
At1g17270.1 68414.m02103 expressed protein 28 6.5
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 8.7
At1g76010.1 68414.m08825 expressed protein 28 8.7
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 126 bits (305), Expect = 1e-29
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL 134
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
K HAC+GGT+VRED R L++GVH
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGVH 159
Score = 121 bits (291), Expect = 7e-28
Identities = 56/96 (58%), Positives = 76/96 (79%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV+DM+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + S
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
ATMP + LE++R FM PVRILV++ L + + F
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQF 255
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +3
Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQFY+ +E EEWK
Sbjct: 251 GIKQFYVNVEKEEWK 265
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 126 bits (303), Expect = 2e-29
Identities = 59/85 (69%), Positives = 71/85 (83%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 77 KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL 136
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
K AC+GGT+VRED R L+SGVH
Sbjct: 137 GVKAQACVGGTSVREDQRVLQSGVH 161
Score = 122 bits (293), Expect = 4e-28
Identities = 56/101 (55%), Positives = 80/101 (79%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV+D++ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L + VQV + S
Sbjct: 162 VVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFS 221
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
ATMP + LE++R FM PVRILV++ L + + F + ++
Sbjct: 222 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVD 262
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +3
Query: 117 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQFY+ ++ EEWK
Sbjct: 253 GIKQFYVNVDKEEWK 267
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 123 bits (297), Expect = 1e-28
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ 134
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
K HAC+GGT+VRED R L++GVH
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGVH 159
Score = 118 bits (285), Expect = 4e-27
Identities = 55/96 (57%), Positives = 75/96 (78%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGRV+DM+ R++L + IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + S
Sbjct: 160 VVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
ATMP + LE++R FM PVRILV++ L + + F
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQF 255
Score = 67.7 bits (158), Expect = 9e-12
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +3
Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQFY+ +E E+WK
Sbjct: 251 GIKQFYVNVEKEDWK 265
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 119 bits (286), Expect = 3e-27
Identities = 56/85 (65%), Positives = 68/85 (80%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
QGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H
Sbjct: 71 QGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHA 130
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
N + HACIGG +V EDIR+LE GVH
Sbjct: 131 NIQAHACIGGNSVGEDIRKLEHGVH 155
Score = 113 bits (273), Expect = 1e-25
Identities = 53/96 (55%), Positives = 73/96 (76%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V GTPGRV DMI RR+L IKL +LDE+DEMLSRGFKDQI+DV++ L D+QV L+S
Sbjct: 156 VVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVS 215
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNF 795
AT+P ++LE++ FM +PV+ILV++ L + + F
Sbjct: 216 ATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQF 251
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3
Query: 126 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP ++
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71
Score = 31.5 bits (68), Expect = 0.70
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQF++A+E EEWK
Sbjct: 247 GIKQFFVAVEKEEWK 261
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 113 bits (271), Expect = 2e-25
Identities = 52/100 (52%), Positives = 73/100 (73%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
V GTPGRVYDMI R +L +KL VLDE+DEMLS+G KDQI+DV++ L D+QV L+SA
Sbjct: 144 VSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISA 203
Query: 691 TMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN 810
T+P ++LE++ FM DPVRILV+ L + + + + ++
Sbjct: 204 TLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVD 243
Score = 107 bits (257), Expect = 9e-24
Identities = 48/85 (56%), Positives = 66/85 (77%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 433
+GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H
Sbjct: 58 KGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT 117
Query: 434 NAKCHACIGGTNVREDIRQLESGVH 508
N + HACIGG ++ EDI++LE GVH
Sbjct: 118 NIQAHACIGGKSIGEDIKKLERGVH 142
Score = 55.6 bits (128), Expect = 4e-08
Identities = 20/38 (52%), Positives = 33/38 (86%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIK 257
+++FDDM + +++LRG+Y YG++KPS IQQRA++P +K
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 780 GIKQFYIAIELEEWK 824
GIKQ+Y+ ++ EEWK
Sbjct: 234 GIKQYYVDVDKEEWK 248
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 82.2 bits (194), Expect = 4e-16
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ GGT++++DI +L VH
Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVH 251
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L+VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ S
Sbjct: 252 LLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFS 311
Query: 688 ATMPDDVLEVSRCFMRDP 741
AT P V + F+ +P
Sbjct: 312 ATFPVTVKDFKDRFLTNP 329
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 82.2 bits (194), Expect = 4e-16
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL
Sbjct: 168 GRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ GGT++++DI +L VH
Sbjct: 228 IQVMVTTGGTSLKDDIMRLYQPVH 251
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L+VGTPGR+ D+ + + V+DEAD++LS+ F+ + + L Q+++ S
Sbjct: 252 LLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFS 311
Query: 688 ATMPDDVLEVSRCFMRDP 741
AT P V + F+ +P
Sbjct: 312 ATFPVTVKDFKDRFLTNP 329
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 79.4 bits (187), Expect = 3e-15
Identities = 38/84 (45%), Positives = 55/84 (65%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +LN
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN 220
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ GGT++R+DI +L VH
Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVH 244
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L+VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ S
Sbjct: 245 LLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFS 304
Query: 688 ATMPDDVLEVSRCFMRDP 741
AT P V +R P
Sbjct: 305 ATFPVTVKAFKDRHLRKP 322
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 79.4 bits (187), Expect = 3e-15
Identities = 38/84 (45%), Positives = 55/84 (65%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +LN
Sbjct: 161 GSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN 220
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ GGT++R+DI +L VH
Sbjct: 221 IQVMVTTGGTSLRDDIMRLHQPVH 244
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L+VGTPGR+ D+ + + V+DEAD++LS F+ + ++ + L + Q ++ S
Sbjct: 245 LLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFS 304
Query: 688 ATMPDDVLEVSRCFMRDP 741
AT P V +R P
Sbjct: 305 ATFPVTVKAFKDRHLRKP 322
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/103 (35%), Positives = 63/103 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L++GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L S
Sbjct: 239 LIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFS 297
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*K 816
AT+ +V +V ++ + + + + P K +N + ++ K
Sbjct: 298 ATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAK 340
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVV 412
G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 147 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 206
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESGV 505
LG L K +GG + + +++ GV
Sbjct: 207 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 237
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/103 (35%), Positives = 63/103 (61%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L++GTPGRV D++++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L S
Sbjct: 102 LIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFS 160
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSLPWKVLNNFTLQLN*K 816
AT+ +V +V ++ + + + + P K +N + ++ K
Sbjct: 161 ATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAK 203
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVV 412
G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 10 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQA 69
Query: 413 IALGDHLNAKCHACIGGTNVREDIRQLESGV 505
LG L K +GG + + +++ GV
Sbjct: 70 KMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 100
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 74.1 bits (174), Expect = 1e-13
Identities = 35/85 (41%), Positives = 50/85 (58%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
C +VV TPGR+ DM+ +AL VLDEAD M GF+ Q+ + + D Q +L
Sbjct: 352 CEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLL 411
Query: 682 LSATMPDDVLEVSRCFMRDPVRILV 756
SATMP V +++R + DP+R+ V
Sbjct: 412 FSATMPWKVEKLAREILSDPIRVTV 436
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVIAL 421
GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
+ A GG + E ++L++G
Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKAG 351
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 129 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
D + V+TF+D +++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V L +L
Sbjct: 191 GSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLK 250
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+ GGT++R+DI +L VH
Sbjct: 251 IEVMVTTGGTSLRDDIMRLYQPVH 274
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
L+VGTPGR+ D+ + + V+DEAD++LS F+ I ++ + L Q+++ S
Sbjct: 275 LLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFS 334
Query: 688 ATMPDDVLEVSRCFMRDP 741
AT P V +++ P
Sbjct: 335 ATFPVTVKSFKDRYLKKP 352
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
F+D LK +LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/81 (40%), Positives = 54/81 (66%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VVGTPGR+ D+I R+L ++ VLDEAD+ML+ GF++ + + + L Q +L S
Sbjct: 231 VVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFS 290
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP V +++R ++ +P+ I
Sbjct: 291 ATMPTWVKKLARKYLDNPLNI 311
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 10/74 (13%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQIQ 403
QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q++
Sbjct: 138 QGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVE 197
Query: 404 KVVIALGDHLNAKC 445
K + +L+ C
Sbjct: 198 KEIKESAPYLSTVC 211
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI + + D Q +L S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P +V ++R F+RDP + ++ L
Sbjct: 351 ATWPREVETLARQFLRDPYKAIIGSTDL 378
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIA 418
+GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
G + GG IR L GV
Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ DM+ + + + VLDEAD ML GF+ QI + + D Q +L S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P +V ++R F+RDP + ++ L
Sbjct: 351 ATWPREVETLARQFLRDPYKAIIGSTDL 378
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIA 418
+GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 201 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
G + GG IR L GV
Sbjct: 261 FGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 684
+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ ++ V + FM+DP+ I V ++
Sbjct: 229 SATLSKEIRPVCKKFMQDPMEIYVDDEA 256
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 434 NAKCHACIGGTNVR 475
+ K GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 684
+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++
Sbjct: 86 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 145
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ ++ V + FM+DP+ I V ++
Sbjct: 146 SATLSKEIRPVCKKFMQDPMEIYVDDEA 173
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 263 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 439
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 440 KCHACIGGTNVR 475
K GG N++
Sbjct: 62 KVSVFYGGVNIK 73
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 684
+VVGTPGRV + + L ++ F+LDE D+ML S + + ++FKM D QV++
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKKS 768
SAT+ ++ V + FM+DP+ I V ++
Sbjct: 229 SATLSKEIRPVCKKFMQDPMEIYVDDEA 256
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 433
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 434 NAKCHACIGGTNVR 475
+ K GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIKDAMLSL 275
F D LK ELLR I GFE PS +Q CI A+L +
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHE----CIPQAILGM 84
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
E C++++GTPGR+ D++ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200
Query: 673 VILLSATMPDDVLEVSRCFMRDPVRILVQKKS 768
L SAT + V E+++ +R+PVR+ V+ KS
Sbjct: 201 TGLFSATQTEGVEELAKAGLRNPVRVEVRAKS 232
Score = 41.5 bits (93), Expect = 7e-04
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Frame = +2
Query: 218 FCNP--ATRNNALHQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 373
FC P A L +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 374 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 496
PTREL+ QI V L N +GG V+ D++ +E
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 68.5 bits (160), Expect = 5e-12
Identities = 30/81 (37%), Positives = 53/81 (65%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ VGTPGR+ D++ R AL+ + ++ VLDEAD+ML GF + + + + L A Q ++ S
Sbjct: 241 VAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFS 300
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP + +++ ++ +P+ I
Sbjct: 301 ATMPSWIRSLTKKYLNNPLTI 321
Score = 58.4 bits (135), Expect = 5e-09
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVI 415
+GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q++K
Sbjct: 152 EGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFR 211
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLESGV 505
L+ C GGT + + +R+L G+
Sbjct: 212 ESAPSLDTIC--LYGGTPIGQQMRELNYGI 239
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/81 (35%), Positives = 52/81 (64%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+ VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ S
Sbjct: 229 VAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 288
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
ATMP + +++ ++ +P+ +
Sbjct: 289 ATMPSWIRSLTKKYLNNPLTV 309
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVI 415
+GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 140 EGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFR 199
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLESGV 505
L+ C GGT + + +RQL+ GV
Sbjct: 200 ESAPSLDTIC--LYGGTPIGQQMRQLDYGV 227
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+ TPGR+ DM+ + + VLDEAD ML GF QI + + D Q + S
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWS 284
Query: 688 ATMPDDVLEVSRCFMRDPVRILVQKKSL 771
AT P +V ++S+ F+ +P ++++ L
Sbjct: 285 ATWPKEVEQLSKKFLYNPYKVIIGSSDL 312
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIA 418
+GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+
Sbjct: 135 KGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASK 194
Query: 419 LGDHLNAKCHACIGGTNVREDIRQLESGV 505
G K GG +R L+ GV
Sbjct: 195 FGSSSKIKTTCIYGGVPKGPQVRDLQKGV 223
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 65.7 bits (153), Expect = 4e-11
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG LN
Sbjct: 95 GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLN 154
Query: 437 AKCHACIGGTNVREDIRQLESGVH 508
+C +GG ++ L S H
Sbjct: 155 LRCSVIVGGMDMLTQTMSLVSRPH 178
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRA----LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 675
+V+ TPGR+ ++ + + T K VLDEAD +L GF+D++ +F+ L Q
Sbjct: 179 IVITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQT 237
Query: 676 ILLSATMPDDV 708
+L SATM ++
Sbjct: 238 LLFSATMTSNL 248
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ DM+ ++ + + + LDEAD ++ GF+D I +VF + Q +L S
Sbjct: 281 IVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFS 340
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP + +R + PV + V
Sbjct: 341 ATMPTKIQIFARSALVKPVTVNV 363
Score = 39.5 bits (88), Expect = 0.003
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQKVV 412
GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q +VV
Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVV 242
Query: 413 ------IALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
+ + + CIGG ++R + ++ GVH
Sbjct: 243 EQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVH 280
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+V+GTPGR+ D+I L + + VLDEAD ML GF++ + + + Q+++ S
Sbjct: 244 IVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFS 303
Query: 688 ATMPDDVLEVSRCFM-RDPVRILV 756
AT P DV ++++ FM +P+++++
Sbjct: 304 ATWPLDVHKLAQEFMDPNPIKVII 327
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQI 400
L GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Query: 401 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
V+ G+ K GG++ I + SGV
Sbjct: 208 SDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV 242
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Frame = +1
Query: 448 CLHWWHQCP*RYSPTGEWCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 627
CL+ P + +VVGTPGR+ D I R+ L + ++ VLDEADEML GF
Sbjct: 207 CLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFV 266
Query: 628 DQIHDVFKML--SADVQVILLSATMPDDVLEVSRCFMR 735
+ + + + S VQ +L SAT+P V +S F++
Sbjct: 267 EDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLK 304
Score = 39.1 bits (87), Expect = 0.004
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQIQK 406
G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAA 192
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
A G L GG + +L+ GV
Sbjct: 193 DFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Frame = +1
Query: 508 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+++ TPGR+ +++ + T++ V DEAD + GF +Q+H + LS + Q +L
Sbjct: 151 VIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLF 210
Query: 685 SATMPDDVLEVSRCFMRDP--VRILVQKKSLPWKVLNNFTLQ 804
SAT+P + E ++ +R+P VR+ V+ K P L+ T++
Sbjct: 211 SATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVR 252
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDH 430
G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG
Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF 124
Query: 431 LNAKCHACIGGTNVREDIRQLESG 502
+ + +GG ++ + +L G
Sbjct: 125 TDLRVSLLVGGDSMEDQFEELTKG 148
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +1
Query: 499 WCSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQV 675
WC +++ TP R+ I + + + ++ VLDE+D++ + QI V K S +
Sbjct: 258 WCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIR 317
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKS 768
L SAT+PD V E++R M D VR+++ +K+
Sbjct: 318 SLFSATLPDSVEELARSIMHDAVRVIIGRKN 348
Score = 34.3 bits (75), Expect = 0.100
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 397
L GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 175 LLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 61.3 bits (142), Expect = 8e-10
Identities = 29/83 (34%), Positives = 47/83 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ ++ + + +L LDEAD ++ GF+D I VF + Q +L S
Sbjct: 232 IVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFS 291
Query: 688 ATMPDDVLEVSRCFMRDPVRILV 756
ATMP + + + PV + V
Sbjct: 292 ATMPAKIQIFATSALVKPVTVNV 314
Score = 41.5 bits (93), Expect = 7e-04
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ----I 400
GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q +
Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVV 193
Query: 401 QKVVIALGD--HLNAKCHACIGGTNVREDIRQLESGVH 508
++ V +L + + + CIGG ++R + ++ GVH
Sbjct: 194 EQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVH 231
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/81 (33%), Positives = 48/81 (59%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ + + + L VLDEAD ML GF+ QI + + Q ++ +
Sbjct: 560 IVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 619
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P +V +++ + +PV++
Sbjct: 620 ATWPKEVRKIASDLLVNPVQV 640
Score = 51.2 bits (117), Expect = 8e-07
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
Q RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ +
Sbjct: 471 QSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRF 530
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G C GG +++LE G
Sbjct: 531 GRSSRISCTCLYGGAPKGPQLKELERG 557
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q ++ +
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P V +++ + +P ++
Sbjct: 343 ATWPKGVRKIAADLLVNPAQV 363
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G C GG +R LE G
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q ++ +
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P V +++ + +P ++
Sbjct: 343 ATWPKGVRKIAADLLVNPAQV 363
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G C GG +R LE G
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ R + I VLDEAD ML GF+ QI + K + Q ++ +
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P V +++ + +P ++
Sbjct: 343 ATWPKGVRKIAADLLVNPAQV 363
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF 253
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
G C GG +R LE G
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERG 280
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 58.8 bits (136), Expect = 4e-09
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 427
GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ L
Sbjct: 204 GRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQ 263
Query: 428 HLNAKCHACIGGTNVRE 478
+ KC +GG +VRE
Sbjct: 264 FTDIKCGLIVGGLSVRE 280
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRR-ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
+VV TPGR+ D + ++ + + + +LDEAD +L GF +I ++ ++ Q +L
Sbjct: 291 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLF 350
Query: 685 SATMPDDVLEVSRCFMRDPVRI 750
SATM ++V E+ + + P+R+
Sbjct: 351 SATMTEEVKELVKLSLNKPLRL 372
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 147 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 508 LVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 684
++V TPGR++D M + ++K VLDEAD +L+ F+ ++ + + + + + L
Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLF 201
Query: 685 SATMPDDVLEVSRCFMRDPVRILVQKK 765
SATM V ++ R +R+PV+I K
Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASK 228
Score = 52.4 bits (120), Expect = 4e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQQ 397
+G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA Q
Sbjct: 45 EGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ 104
Query: 398 IQKVVIALGDHLNAKCHACIGG 463
I + ALG ++ +C +GG
Sbjct: 105 IAEQFEALGADISLRCAVLVGG 126
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 135 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
++VV+TF ++ ++EEL++ G++ PS IQ A+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 687
+VV TPGR+ D++ + + + + VLDEAD ML GF+ QI + + Q ++ +
Sbjct: 354 IVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYT 413
Query: 688 ATMPDDVLEVSRCFMRDPVRI 750
AT P +V +++ + +P ++
Sbjct: 414 ATWPKEVRKIAADLLVNPAQV 434
Score = 52.0 bits (119), Expect = 5e-07
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIAL 421
Q RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ +
Sbjct: 265 QNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKF 324
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESGV 505
G C GG ++++E GV
Sbjct: 325 GKSSKISCACLYGGAPKGPQLKEIERGV 352
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 669
C ++V TPGR+ D++ R + I+ LDEAD ML GF+ QI + + +
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILV 756
Q +L SAT P + ++ FM + + + V
Sbjct: 340 QTMLFSATFPSQIQRLAADFMSNYIFLAV 368
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 409
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESG 502
K GGT + + +R+LE G
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 669
C ++V TPGR+ D++ R + I+ LDEAD ML GF+ QI + + +
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILV 756
Q +L SAT P + ++ FM + + + V
Sbjct: 340 QTMLFSATFPSQIQRLAADFMSNYIFLAV 368
Score = 49.2 bits (112), Expect = 3e-06
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 409
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESG 502
K GGT + + +R+LE G
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 666
E C +++ TPGR+ D I ++ +KLF++DEAD +L GFK + + L
Sbjct: 503 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQ 562
Query: 667 VQVILLSATMPDDVLEVSRCFMR 735
Q +L SAT+P +V VS+ ++
Sbjct: 563 RQSLLFSATIPKEVRRVSQLVLK 585
Score = 44.4 bits (100), Expect = 9e-05
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Frame = +2
Query: 230 ATRNNALHQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTR 382
AT + L G+D + +A++GTGK+ F + ++L+ +++ + LIL PTR
Sbjct: 404 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTR 462
Query: 383 ELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLES 499
ELA QI A L +H IGGT R D ++LES
Sbjct: 463 ELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLES 502
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 57.6 bits (133), Expect = 9e-09
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
E +L++GTPGR+ DM+ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 134 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 193
Query: 673 VILLSATMPDDVLEVSRCFMRDP 741
L SAT V ++++ +R+P
Sbjct: 194 TGLFSATQTQAVADLAKAGLRNP 216
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 421
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
Query: 422 GDHLNAKCHACIGGTNVRED 481
AKC N E+
Sbjct: 115 RLDF-AKCREVEADMNTLEE 133
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
E +L++GTPGR+ DM+ R L +++ +LDEAD +L GF+ Q++ + L +
Sbjct: 141 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 200
Query: 673 VILLSATMPDDVLEVSRCFMRDPVRIL 753
L SAT V ++++ +R+ + ++
Sbjct: 201 TGLFSATQTQAVADLAKAGLRNAMEVI 227
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 421
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113
Query: 422 GDHL-NAKCHACIGGTNVREDIRQLE 496
L N +GG V D+ LE
Sbjct: 114 VSTLPNVNSVLLVGGREVEADMNTLE 139
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 496 EWCSLVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 666
E C +++ TPGR+ D I ++ +KLF++DEAD +L GF+ + + L
Sbjct: 456 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQ 515
Query: 667 VQVILLSATMPDDVLEVSRCFMR 735
Q +L SAT+P +V VS+ ++
Sbjct: 516 RQSLLFSATIPKEVRRVSQLVLK 538
Score = 43.6 bits (98), Expect = 2e-04
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Frame = +2
Query: 230 ATRNNALHQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTR 382
AT + L G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTR
Sbjct: 357 ATLSECL-DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTR 415
Query: 383 ELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLES 499
ELA QI K ++ D + + IGGT + D ++LES
Sbjct: 416 ELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLES 455
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 14/100 (14%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS-------- 660
++VVGTPGR+ ++ LH + + VLDE DE+LS F++ IH + + +
Sbjct: 245 AIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPK 304
Query: 661 ------ADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 762
A+ Q IL+SAT+P V+ ++ + +PV + K
Sbjct: 305 GEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANK 344
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRE 385
A+ +G D + Q+ +G+GKT + + IL +I + E QA+I+AP+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202
Query: 386 LAQQI-QKVVIALGDHLNAKCHACIGGTN 469
L QI ++V LG +GG N
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRR---ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
C ++V TPGR+ D I A +K+ VLDEAD +L GF+ I + + + Q
Sbjct: 183 CQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQ 242
Query: 673 VILLSATMPDDVLEVSRCFMR 735
L SAT+P++V ++ +R
Sbjct: 243 TFLFSATVPEEVRQICLVALR 263
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQK 406
+G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q +
Sbjct: 90 KGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATE 149
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLES 499
L H + IGGT + + +++++
Sbjct: 150 ANTLLKYHPSIGVQVVIGGTRLGLEQKRMQT 180
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 678
+VV TPGR+ D++ + + + + V+DEAD M GF+ QI + + + D Q +
Sbjct: 522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 581
Query: 679 LLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
L SAT P V ++R + PV I V +S+
Sbjct: 582 LFSATFPRQVETLARKVLNKPVEIQVGGRSV 612
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIAL 421
GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKF 492
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
L C GG+ V + I +L+ G
Sbjct: 493 SKALGIICVPVYGGSGVAQQISELKRG 519
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.0 bits (129), Expect = 3e-08
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQ 397
L +GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA Q
Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252
Query: 398 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
I K GGT + + +R+LE GV
Sbjct: 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QV 675
++V TPGR+ D++ R + I+ LDEAD ML GF+ QI + + + Q
Sbjct: 290 ILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 349
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILV 756
+L SAT P ++ ++ F+ + + + V
Sbjct: 350 LLFSATFPREIQRLAADFLANYIFLAV 376
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 55.6 bits (128), Expect = 4e-08
Identities = 42/105 (40%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Frame = +2
Query: 227 PATRNNA--LHQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALIL 370
P RN L GRD++A AQ+G+GKTA F I+ I D I + A+IL
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230
Query: 371 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+PTRELA QI K GGT V + IR+LE GV
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGV 275
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QV 675
++V TPGR+ D++ R + ++ LDEAD ML GF+ QI + + + Q
Sbjct: 277 ILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 336
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILV 756
+L SAT P ++ ++ F+ + + + V
Sbjct: 337 MLFSATFPREIQRLASDFLSNYIFLAV 363
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 424
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFK---MLSADVQV 675
+V+GTPG + + + L N +K+ V DEAD ML+ GF+D + K ++ + QV
Sbjct: 217 VVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQV 276
Query: 676 ILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
+L SAT + V + ++DP ++ V+++ L
Sbjct: 277 LLFSATFNETVKDFVARTVKDPNQLFVKREDL 308
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 153 FDDMNLKEELLRGIYA-YGFEKPSAIQ 230
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +1
Query: 508 LVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 678
+VV TPGR+ D++ + + + + V+DEAD M GF+ QI + + + + Q +
Sbjct: 655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV 714
Query: 679 LLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
L SAT P V ++R + PV I V +S+
Sbjct: 715 LFSATFPRQVETLARKVLNKPVEIQVGGRSV 745
Score = 52.0 bits (119), Expect = 5e-07
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIAL 421
GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKF 625
Query: 422 GDHLNAKCHACIGGTNVREDIRQLESG 502
L +C GG+ V + I +L+ G
Sbjct: 626 SKPLGIRCVPVYGGSGVAQQISELKRG 652
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
+LV+ TPGR+ D + +A +K V+DEAD +L F++ ++ + K+L Q L
Sbjct: 213 NLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTAL 272
Query: 682 LSATMPDDVLEVSRCFMRDPVRI 750
SAT V +++R + PV +
Sbjct: 273 FSATQTSKVKDLARVSLTSPVHV 295
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVI 415
L +G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V
Sbjct: 123 LLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAE 182
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLESG 502
L H + IGG N R + +++ SG
Sbjct: 183 ELLKHHSQTVSMVIGGNNRRSEAQRIASG 211
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
C ++V TPGR+ D I + A +K+ VLDEAD +L GF+ I + + Q
Sbjct: 511 CQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQ 570
Query: 673 VILLSATMPDDVLEV 717
L SAT+P++V ++
Sbjct: 571 TFLFSATVPEEVRQI 585
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQK 406
QG+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q +
Sbjct: 418 QGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAE 477
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLES 499
L H + IGGT + + R++++
Sbjct: 478 ANTLLKYHPSIGVQVVIGGTKLPTEQRRMQT 508
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQKV 409
Q RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 349 QQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEE 408
Query: 410 VIALGDHLNAKCHACIGGTNVREDIRQLESG 502
+ +L + + +GG ++ E ++ G
Sbjct: 409 TVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439
Score = 51.6 bits (118), Expect = 6e-07
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 17/102 (16%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF-KMLSADVQ-- 672
C +V+ TPGR+ D + RR N VLDEAD M+ GF+ Q+ V M S++++
Sbjct: 440 CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPE 499
Query: 673 --------------VILLSATMPDDVLEVSRCFMRDPVRILV 756
+ SATMP V ++R ++R+PV + +
Sbjct: 500 NEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTI 541
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 144 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
+ ++++ L ELL+ + G++KPS IQ AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 502 CSLVVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 672
C ++V TPGR+ D I + A +K+ VLDEAD +L GF+ +I + + Q
Sbjct: 209 CQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQ 268
Query: 673 VILLSATMPDDVLEV 717
L SAT+ D+V ++
Sbjct: 269 TFLFSATVSDEVRQI 283
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQIQK 406
QG+D++A+A++GTGKT F + ++ + D L++ PTRELA Q +
Sbjct: 116 QGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAE 175
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLE 496
I L H + IGGT + + R+L+
Sbjct: 176 ANILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 51.2 bits (117), Expect = 8e-07
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 409
L GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
+L+V TPGR+ D + +K V+DEAD +L + F++ + + +L Q L
Sbjct: 278 NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSL 337
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQK 762
SAT V +++R + PV I V +
Sbjct: 338 FSATQSAKVEDLARVSLTSPVYIDVDE 364
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 LHQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVI 415
L G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q V
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAK 247
Query: 416 ALGDHLNAKCHACIGGTNVREDIRQLESGVH 508
L + + IGG + + L GV+
Sbjct: 248 ELLKYHSQTVGKVIGGEKRKTEAEILAKGVN 278
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 681
+++V PGR+ + +++ +LDEAD +L FK Q+ + L Q +L
Sbjct: 195 NILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLL 254
Query: 682 LSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
SAT V +++R +RDP I V +++
Sbjct: 255 FSATQTKKVKDLARLSLRDPEYISVHAEAV 284
Score = 41.9 bits (94), Expect = 5e-04
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALG 424
GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q V+ +G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167
Query: 425 DHLNAKCHACIGGTNVREDIRQLESGVH 508
IGG RE + + VH
Sbjct: 168 KFHKFSAGLLIGG---REGVDVEKERVH 192
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 436
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122
Query: 437 AKCHACIGGTNVREDIRQL 493
+ +G +++ +I QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = +1
Query: 565 ANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 744
+ ++ + VLDEAD +LS G++D + V ++ Q +L+SAT DV ++ + + +P+
Sbjct: 198 SESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPI 257
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Frame = +2
Query: 254 QGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQIQKVVI 415
+G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+ V
Sbjct: 82 EGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVS 141
Query: 416 AL 421
+L
Sbjct: 142 SL 143
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 135 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 242
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 18/100 (18%)
Frame = +1
Query: 505 SLVVGTPGRVYDMITRRA--LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA----- 663
S+++ TPGR+ D + A +H N ++ + DEAD +L G+ +I + K+L +
Sbjct: 157 SILIATPGRLLDHLKNTASFVHKN-LRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQ 215
Query: 664 ----DV-------QVILLSATMPDDVLEVSRCFMRDPVRI 750
D+ Q +LLSAT+ D V ++++ + DPV I
Sbjct: 216 GEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMI 255
Score = 34.7 bits (76), Expect = 0.075
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 412
GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+ + +
Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 42.7 bits (96), Expect = 3e-04
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 20/106 (18%)
Frame = +2
Query: 239 NNALHQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 358
N A +QG+DVI A++G+GKT F + ILQ+ +D + E Q
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281
Query: 359 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 496
ALI+ PTRELA Q+ + + +L+ K +GG + R+L+
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHA---NTIKLFVLDEADEMLSRGFKDQIHDVFKML 657
+VV TPGR++++++ H +++ FVLDEAD M+ RG ++ + +L
Sbjct: 332 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Frame = +2
Query: 245 ALHQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQ 397
A+ + + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 398 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 505
+ +V ++ H + GG+ +R L + +
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAI 240
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 636
+VVGTPGR+ I + I VLDEAD M RGF +I
Sbjct: 242 MVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/87 (19%), Positives = 45/87 (51%)
Frame = +1
Query: 511 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 690
+V TP R+ +++T + + + + L V+DE + S G+ + + + + +S+ Q I+ +
Sbjct: 250 IVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNN 309
Query: 691 TMPDDVLEVSRCFMRDPVRILVQKKSL 771
+ ++ + F+ V + +S+
Sbjct: 310 SFSASIIPAVQSFLGGSVNRVTVNESV 336
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 33.5 bits (73), Expect = 0.17
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQIQKV 409
G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q+
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLAN 470
Query: 410 VIALG-DHLNAKCHACIGGTNVREDIRQLESGV 505
++ + + GG R + LE GV
Sbjct: 471 CRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 508 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQIHDVFKMLSADVQVILL 684
+++ TPGR ++ L + ++ +LDE D + F+ + ++ Q + +
Sbjct: 505 VLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFV 564
Query: 685 SATMPDDV 708
+AT+P ++
Sbjct: 565 TATLPLEI 572
>At1g13200.1 68414.m01531 F-box family protein contains F-box domain
Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
interaction domain
Length = 435
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +1
Query: 670 QVILLSATMPDDVLEVSRCFMRDPVRILVQKKSL 771
+V+++ +++P+DVLE F+R PV+ L++ KSL
Sbjct: 35 RVLMVPSSLPNDVLE--EIFLRFPVKALIRLKSL 66
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +2
Query: 311 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 463
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 63 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 236
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 237 AIMP 248
+ P
Sbjct: 141 EVDP 144
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 362 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 466
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 665 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 522
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 665 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 522
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 295
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 665 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 522
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/95 (16%), Positives = 42/95 (44%)
Frame = +2
Query: 227 PATRNNALHQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQK 406
P +N+ + ++ S A + +L++ DT+ P+++L++Q+
Sbjct: 82 PHHQNSETESNWNSVSDPASAADAAAMEYVGVLKREDTA--NLLINCCKPSKDLSEQLDS 139
Query: 407 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHW 511
V + G + + + + + ++ESG+H+
Sbjct: 140 VTLENGSQSSGEAKQNVKLIRINYWVEKIESGIHF 174
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Frame = +2
Query: 257 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ--------------ALILAPTRELAQ 394
G+DVI A++G+GKT + I+ Q+ + + + +LIL P L +
Sbjct: 117 GKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCE 176
Query: 395 QIQKVVIALGD 427
Q+ ++V L D
Sbjct: 177 QVVRMVNGLVD 187
>At1g17270.1 68414.m02103 expressed protein
Length = 564
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 207 FEKPSAIQQRAIMPCIKDAMLS-LKPSQELEKLLLSLYRFYNKSIQA 344
F +AI ++ +K A+L + ++E+E++LLS +R N SI A
Sbjct: 133 FNSSNAISSSVVIDNVKAALLKQISVNKEIEEVLLSPHRTGNYSITA 179
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 329 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 463
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 18 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 116
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,927,686
Number of Sequences: 28952
Number of extensions: 424242
Number of successful extensions: 1479
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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