Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021822
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 54 3e-08
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 53 4e-08
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 44 3e-05
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 43 5e-05
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 38 0.002
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 37 0.003
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 35 0.012
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 30 0.36
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 26 5.8
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 26 7.6
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 54.0 bits (124), Expect = 3e-08
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 5 GGK-IIEREGYFVEPTIITGLPHDSPIVKTECFAPIVYCIEIPDLETGIQYNNEVEQGLS 181
GGK I +GYF EPT+++G+ D + E F P+ + D E I++ N+ + GL+
Sbjct: 366 GGKEISSSKGYFFEPTVLSGVTQDMLVASEETFGPLASVFKFDDTEEVIEWANDSDVGLA 425
Query: 182 SSLFTENL 205
+FT NL
Sbjct: 426 GYVFTNNL 433
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 5 GGKIIEREGYFVEPTIITGLPHDSPIVKTECFAPIVYCIEIPDLETGIQYNNEVEQGLSS 184
GGK GYFVEPTI++ + D + K E F P++ I+ +E I+ N GL++
Sbjct: 372 GGKRHGNLGYFVEPTILSNVTEDMAVGKEEIFGPVLAVIKFKTIEEAIRRGNNSTYGLAA 431
Query: 185 SLFTENLGDVFK 220
+ T N+ + K
Sbjct: 432 GVHTNNITNAIK 443
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 23 REGYFVEPTIITGLPHDSPIVKTECFAPIVYCIEIPDLETGIQYNNEVEQGLSSSLFTEN 202
++GYF+ PTI + IVK E F P+V + + I+ N GL++ FT++
Sbjct: 373 KQGYFISPTIFADCSENMTIVKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKD 432
Query: 203 L 205
L
Sbjct: 433 L 433
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 20 EREGYFVEPTIITGLPHDSPIVKTECFAPIVYCIEIPDLETGIQYNNEVEQGLSSSLFTE 199
E++GYF+ PT+ T + + I + E F P++ E ++ N+ E GL S +F+
Sbjct: 379 EQKGYFIPPTVFTNVQTHNKIWREEIFGPVLAVKTFHTNEEALELANDSEYGLGSGVFST 438
Query: 200 N 202
N
Sbjct: 439 N 439
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 5 GGKIIEREGYFVEPTIITGLPHDSPIVKTECFAPI--VYCIEIPDLETGIQ-YNNEVEQG 175
GGK + EG+FVEPT++ I E F P+ VY E +L+ + G
Sbjct: 403 GGKADDSEGFFVEPTVLLSKNPKHDIFVNELFGPVLSVYVYEDDNLDAVCDLIDTTTPYG 462
Query: 176 LSSSLFTEN 202
L+ S+F ++
Sbjct: 463 LTGSIFAQD 471
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 26 EGYFVEPTIITGLPHDSPIVKTECFAPIVYCIEIPDLETGIQYNNEVEQGLSSSLF 193
+G + PT++ ++ I + ECFAPI E ++ N E GL +S+F
Sbjct: 352 KGNYFLPTLLVDATNEMKIAQEECFAPIALVFRAKSPEHALEIANGTEFGLGASVF 407
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 5 GGKIIEREG-YFVEPTIITGLPHDSPIVKTECFAPIVYCIEIPDLETGIQYNNEVEQGLS 181
GGK+ G + EPT+I I + E F P+ + + + + N+ GL+
Sbjct: 371 GGKVASNLGPMYFEPTVIINAKQGMLISEEETFGPVGALFKFDTEDEVVAWANDSPVGLA 430
Query: 182 SSLFTENLGDVFK 220
LF++++ VF+
Sbjct: 431 GYLFSKDISRVFR 443
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -1
Query: 546 TIVCLRFRKRSPKPSIKSYLEGNEMNVGSICRTGSVSLVTELDVLR*LDGSGVIDGDG 373
T+ C R+ +P+ +SYL + +CR VS++ DVL DG VI+ G
Sbjct: 185 TVHCRTTPMRNTEPADRSYLS----EIVGVCRNKDVSILVNGDVLSYNDGLDVIEKYG 238
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +2
Query: 110 VYCIEIPDLETGIQYNNEVEQGLSSSLFTENLGDVFKWIGPHGSD 244
V C ++PD+ +QYN + L V W+ P D
Sbjct: 161 VVCTDLPDIVENMQYNVDYNSELIQQYAGSVSCHVLDWMNPPDDD 205
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 96 ASPPSSTASRYQILRLGSNTTTRSNKASPPVYS 194
ASP +S A RY+ +L S+T +++PPV+S
Sbjct: 94 ASPDTSVALRYRSSQLSSSTF----ESTPPVFS 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,764
Number of Sequences: 5004
Number of extensions: 59454
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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