Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021822
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 108 SSTASRYQILRLGSNTTTRSNKASPPVYSRRT 203
           SST SR   L L      R    SPP   RRT
Sbjct: 880 SSTDSRNPALALAEPYNQRGTVVSPPPTKRRT 911


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 108  SSTASRYQILRLGSNTTTRSNKASPPVYSRRT 203
            SST SR   L L      R    SPP   RRT
Sbjct: 918  SSTDSRNPALALAEPYNQRGTVVSPPPTKRRT 949


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 774 FKNMIFFLNHDRFF 815
           F N+I ++N DRFF
Sbjct: 3   FNNVIKYINFDRFF 16


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 LSSSLFTENLGDVFKWIGPHGSD 244
           L+S++ +E+ G   KW+   G+D
Sbjct: 18  LASTILSESAGTSCKWLSEGGND 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,908
Number of Sequences: 438
Number of extensions: 4326
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)