Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021821X
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1W3U0 Cluster: General secretion pathway L precursor; ...    33   4.7  
UniRef50_UPI000058892D Cluster: PREDICTED: hypothetical protein;...    32   6.2  

>UniRef50_A1W3U0 Cluster: General secretion pathway L precursor;
           n=4; Comamonadaceae|Rep: General secretion pathway L
           precursor - Acidovorax sp. (strain JS42)
          Length = 409

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 471 HGPFSLVLVLSIAGSSAVASRPASGAP 391
           HGP   V VL +A ++A+A+RPA  AP
Sbjct: 169 HGPQQAVAVLPLAAAAALAARPADDAP 195


>UniRef50_UPI000058892D Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 285

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 350 DYTGLKIQVLQGGNGAPEAGRDATAEDPAMDSTKTK---EKGPWNK 478
           DY+GLKIQ LQ  +  P    +    D   +  KTK     GPWN+
Sbjct: 107 DYSGLKIQALQVTDEPPVGEEEEEEVDENGEIIKTKGQGASGPWNR 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,484,405
Number of Sequences: 1657284
Number of extensions: 5273739
Number of successful extensions: 16477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16475
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)