Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021821X
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0413 - 5485173-5485217,5485271-5485387,5485484-5485567,548...    30   1.2  
02_05_1247 + 35233756-35233785,35234902-35236107                       29   1.6  
01_01_0963 - 7577207-7577992,7578506-7578622,7578711-7578921,757...    28   3.6  
02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368...    27   8.4  
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    27   8.4  

>04_01_0413 -
           5485173-5485217,5485271-5485387,5485484-5485567,
           5485741-5486052
          Length = 185

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 374 VLQGGNGAPEAGRDATAEDPAMDSTKTKEK 463
           V  GG+ A  AG  +  EDP M+  K KEK
Sbjct: 70  VRYGGDEAVSAGGGSRGEDPVMEKEKEKEK 99


>02_05_1247 + 35233756-35233785,35234902-35236107
          Length = 411

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 368 IQVLQG----GNGAPEAGRDATAEDPAMDSTKTKEKGPWNKPKXRRA 496
           IQV+ G    G  AP+   +  A DPA+D+T T ++    K K + A
Sbjct: 298 IQVITGAEEEGAQAPQQEANTAASDPAVDATSTNQQVSSKKTKNQNA 344


>01_01_0963 -
           7577207-7577992,7578506-7578622,7578711-7578921,
           7579406-7579442,7580781-7580902,7581292-7581500
          Length = 493

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 386 GNGAPEAGRDATAEDPAMDSTKTKEKGPWNKPKXR 490
           GNG P AG D + ++P   S    + G WN P  R
Sbjct: 251 GNGGP-AGTDGSRQNPEETSFFRADGGCWNTPYGR 284


>02_05_1157 -
           34533625-34533875,34535279-34536340,34536673-34536837,
           34536993-34537941
          Length = 808

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 483 LGLFHGPFSLVLVLSIAGSSAVASRPASGAPLPPC 379
           +G+F     +VL+L +  + A   RPASG PLP C
Sbjct: 1   MGVFSSLGVVVLLLLLVVALAPV-RPASGQPLPGC 34


>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 435 AGSSAVASRPASGAPLPPCS 376
           A S   A RPA+ APLPP S
Sbjct: 4   AVSKLAAPRPAAAAPLPPAS 23


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,880,903
Number of Sequences: 37544
Number of extensions: 148194
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)