Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021821X
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            27   6.5  

>SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 465 PFSLVLVLSIAGSSAVASRPASGAPLPPCST*ILSPV 355
           PF+++ ++SI G+SA++S       L  CS  +++P+
Sbjct: 378 PFTIMQIMSIKGTSAMSSDTVFSVLLIQCSNSLVNPI 414


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 410 RDATAEDPAMDSTKTKEKG 466
           R A+++ PAMDST  K+KG
Sbjct: 115 RPASSQTPAMDSTSGKDKG 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,197,514
Number of Sequences: 59808
Number of extensions: 162387
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)