Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021821X
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.58 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 270 SFFGLVRFSVWCLLIF*LTHRLLQTFSLLLIFYDLFLRRNRLNRPSS 130
           +F GL+R  V  L    LTH   + F  L     L LR N ++R  S
Sbjct: 330 TFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIES 376



 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 471  HGPFSLVLVLSIAGSSAVASRPASGAPLPPC 379
            +  + L  + +  G S+ A+  AS AP+P C
Sbjct: 1027 YSKYGLRFLRAKPGKSSGAAAMASAAPMPAC 1057


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 465 PFSLVLVLSIAGSSAVASRPAS-GAPLPP 382
           P S+  ++S   S A    P S GAP+PP
Sbjct: 391 PVSMSALVSAVRSPAGGQLPPSAGAPMPP 419


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 224 KIRRHQTENRTRPKKE 271
           ++RRH     TRP KE
Sbjct: 17  RLRRHIQNVHTRPSKE 32


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 213 HRLLQTFSLLLIFYDLFLRRNRLNRPSSILTKIFVLCFD*MND 85
           H+L++    L  FY++      LN   + +T+  + CF  MND
Sbjct: 528 HKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMND 570


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 213 HRLLQTFSLLLIFYDLFLRRNRLNRPSSILTKIFVLCFD*MND 85
           H+L++    L  FY++      LN   + +T+  + CF  MND
Sbjct: 528 HKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMND 570


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 309 EKKKNGRSMKNR*KTTPGS 365
           EKK N  ++K    TTP S
Sbjct: 10  EKKNNVENLKGGGSTTPAS 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,822
Number of Sequences: 438
Number of extensions: 1475
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)