Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021820
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 53 3e-07
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 50 3e-06
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 44 2e-04
08_02_0020 + 11303438-11304213,11304321-11304699 35 0.060
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 30 1.7
07_01_0986 - 8314733-8314783,8315895-8318381 28 9.2
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 9.2
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 511 GGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLKSTGR-HDIAA 687
G G VE++G G+ +S ATI NM E GAT FP + + YLK TGR D A
Sbjct: 364 GVVGKFVEFYGGGMSELSLADRATIANMSPEYGATMGFFPVDGKTLDYLKLTGRSDDTVA 423
Query: 688 TANSY 702
SY
Sbjct: 424 MIESY 428
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +2
Query: 236 EARLWYFHQIILEN--YAFPGLLMIGTDSHTPNXXXXXXXXXXXXXADAVDVMANIPWEL 409
+ L Y +++ N +P + +GTDSHT +A M P +
Sbjct: 271 QVNLEYLARVVFNNGGILYPDSV-VGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSM 329
Query: 410 KCPKVIGVKLTGKLTGWTSPKDVILKVAGIL 502
P V+G KLTGKL + D++L V +L
Sbjct: 330 VLPGVVGFKLTGKLRNGVTATDLVLTVTQML 360
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/56 (44%), Positives = 30/56 (53%)
Frame = +1
Query: 511 GGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLKSTGRHD 678
G G VE++G G+ +S ATI NM E GAT FP + YLK TGR D
Sbjct: 280 GVVGKFVEFYGEGMGKLSLADRATIANMSPEYGATMGFFPVDHVTLDYLKLTGRSD 335
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +2
Query: 299 MIGTDSHTPNXXXXXXXXXXXXXADAVDVMANIPWELKCPKVIGVKLTGKLTGWTSPKDV 478
++GTDSHT +A M P + P V+G KLTGKL + D+
Sbjct: 209 VVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLTGKLQNGVTATDL 268
Query: 479 ILKVAGIL 502
+L V +L
Sbjct: 269 VLTVTQML 276
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +2
Query: 272 ENYAFPGLLMIGTDSHTPNXXXXXXXXXXXXXADAVDVMANIPWELKCPKVIGVKLTGKL 451
E + PG +++GTDSHT N DA VM LK P I L G++
Sbjct: 162 EGHCRPGEVLLGTDSHTCNAGAFGQFATGIGNTDAGFVMGTGKALLKVPPTIRFVLDGEM 221
Query: 452 TGWTSPKDVILKVAGILTV 508
+ KD+IL++ G ++V
Sbjct: 222 PPYLLAKDLILQIIGEISV 240
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 511 GGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLK 660
G T +E+ G V+ ++ T+CNM E G V P + YL+
Sbjct: 242 GATYKSMEFVGSTVESLNMEERMTLCNMVIEAGGKNGVVPADQTTFNYLE 291
>08_02_0020 + 11303438-11304213,11304321-11304699
Length = 384
Score = 35.1 bits (77), Expect = 0.060
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = -3
Query: 642 AGVVREHASGSADLSAHVADCRHACTRDVVHPGSVVLHDGAGTSLTVRMPATFKI 478
AG+V HA HV DCR VV PG V G+G +R+ A+ K+
Sbjct: 134 AGIVLYHARDVIVHGLHVHDCRAQPPGRVVVPGGAVQPSGSGDGDAIRLVASSKV 188
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 649 AYLKSTGRHDIAATANSYKHLLTPDNKAPY 738
+Y++S+ H +TA+SY PDN+APY
Sbjct: 238 SYMESSNSH--MSTAHSYSSAEVPDNRAPY 265
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 607 GATTSVFPYNSRMEAYLKSTGRHDIAATANSYKHLLTPDNKAPYDQLI 750
G T +V+ +NS ++A +K+ ++ S K + P N Y LI
Sbjct: 698 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 745
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 549 PGSVVLHDGAGTSLTVRMPATFKITSFGLVQPVSLPVNLTPITLGHFSSHGMLAITS 379
P + H TS M T G+ QP+ N++PI FSS G L +T+
Sbjct: 183 PNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIG--ANVSPIKGAEFSSPGQLGLTA 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,791,462
Number of Sequences: 37544
Number of extensions: 567190
Number of successful extensions: 1759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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