Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021820
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16) 132 2e-31
SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2) 105 3e-23
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 29 3.1
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_49246| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014) 29 5.4
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 7.1
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 28 7.1
SB_57677| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_6812| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_48069| Best HMM Match : DUF746 (HMM E-Value=4.5) 28 9.4
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)
Length = 391
Score = 132 bits (320), Expect = 2e-31
Identities = 60/81 (74%), Positives = 67/81 (82%)
Frame = +1
Query: 508 EGGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLKSTGRHDIAA 687
+GGTGAIVEY GPGVD ISCTGM TICNMGAEIGATTS+FPYN RMEAYL++T R +A
Sbjct: 46 KGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATTSIFPYNHRMEAYLRATERSKVAE 105
Query: 688 TANSYKHLLTPDNKAPYDQLI 750
AN YKHLL+ D A YDQ+I
Sbjct: 106 LANQYKHLLSSDEGADYDQVI 126
>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
Length = 193
Score = 105 bits (253), Expect = 3e-23
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +3
Query: 75 SGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLETAGAKYGVGFWKPGSGI 254
S +VAVPSTIHCDHLIEA+ GG +DLA+AKD+NKEVY FL TA AKYGVGFWKPGSGI
Sbjct: 102 SSWQKVAVPSTIHCDHLIEAKDGGSQDLAKAKDINKEVYNFLATASAKYGVGFWKPGSGI 161
Score = 52.8 bits (121), Expect = 3e-07
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +2
Query: 257 HQIILENYAFPGLLMIGTDSHTPN 328
HQI+LENYAFPG+++IGTDSHTPN
Sbjct: 163 HQIVLENYAFPGVMLIGTDSHTPN 186
>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/56 (44%), Positives = 31/56 (55%)
Frame = +1
Query: 511 GGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLKSTGRHD 678
G G VE+ GPGV +S ATI NM E GAT FP + + YL+ TGR +
Sbjct: 293 GVVGKFVEFFGPGVAELSIADRATIANMCPEYGATVGFFPVDDKSMLYLRQTGRDE 348
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 3 LRLRPDRVA-MQDATAQMAMLQFISSGLPRVAVPSTIHC---DHLIEAQVGGEKDLARAK 170
LR+R +R ++ AT LQ + SG RV VP ++ DHL + +GGE L RA+
Sbjct: 469 LRIREERPRQLKKATETDDTLQTLKSG-ERVIVPESMRKEIKDHLHISHLGGESMLRRAR 527
Query: 171 D 173
+
Sbjct: 528 E 528
>SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 529 RWRRYLPHSQDAGHLQDHIFRTRPAGEF 446
+WRRY HSQ+ G+ +H + R GEF
Sbjct: 84 KWRRYKKHSQE-GYTNNHRSQKRCIGEF 110
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -3
Query: 642 AGVVREHASGSADLSAHVADCRHACTRDVVHPGSVVLHD 526
AGV EHA G AD C+ ACT + P +VV D
Sbjct: 240 AGVTVEHAPGDADYKI----CQMACTYALERPVAVVAED 274
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Frame = +1
Query: 469 ERCDLEGGRH-----PDCEGGTGAIVE-YHG 543
E+C++ GG+ PDC GG+G I + Y G
Sbjct: 1075 EKCNISGGKQGCKGFPDCNGGSGCIADKYFG 1105
>SB_49246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 518 PAPSWSTTDPGWTTSRVQAWRQSAT--WALRSALPLACSRTTPAWK 649
P+ + S T P W WR +T W +S P+ +++TP W+
Sbjct: 5 PSLNPSFTTPMWKNKSTPMWRNKSTPMWGNKST-PMWGNKSTPMWR 49
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 446 KLTGWTSPKDVILKVAGILTVREVPAPSWSTTDPGW-TTSRVQAWRQSATWALRSALP 616
K T WTSP + L + + SWS+ P + TTS Q T + S LP
Sbjct: 86 KTTSWTSPSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLP 143
>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
Length = 916
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 508 EGGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLKSTGRHDIAA 687
E G+ + EY GV TG+ MG + +T V+ Y +R S G + +
Sbjct: 219 EYGSTGVWEYRNMGVQEYGSTGIWEYRKMGVQEYGSTGVWEYRNRGVQEYGSMGVQEYGS 278
Query: 688 T 690
T
Sbjct: 279 T 279
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 508 EGGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLKSTGR 672
E G+ + EY V TG+ +MG + +T V+ Y +R STGR
Sbjct: 305 EYGSTGVWEYRSMRVQEYGSTGIWEYRSMGVQEYGSTGVWEYRNRGVQEYGSTGR 359
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 508 EGGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNS-RMEAY 654
E G+ + EY GV TG+ +MG + +T V+ Y S R++ Y
Sbjct: 533 EYGSTGVWEYRSMGVQEYGSTGVWEYRSMGVQEYGSTGVWEYRSMRVQEY 582
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 508 EGGTGAIVEYHGPGVDHISCTGMATICNMGAEIGATTSVFPYNSRMEAYLKSTG 669
E G+ + EY GV TG+ +MG + +T V+ Y S STG
Sbjct: 150 EYGSTGVWEYRNMGVQEYGSTGVWEYRSMGVQEYGSTGVWGYRSMGVHEYGSTG 203
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 493 GHLQDHIFRTRPAGEFTGQFDADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATSIRCV 317
G+++DH RT P+G+ TGQ A + +T D+ SI T ++ K++S C+
Sbjct: 2094 GNIKDH--RTLPSGDLTGQIIALDNKT----SDIDIKSLSIETESEDSYIEKSSSSVCI 2146
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 92 YTGKAGRDKL*HCHLCSGVLHG 27
+ G AG+DK+ C +CS HG
Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHG 845
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 92 YTGKAGRDKL*HCHLCSGVLHG 27
+ G AG+DK+ C +CS HG
Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHG 186
>SB_57677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 512 EVPAPSWSTTDPGWTTSRVQAWRQSATWALRSALP 616
E+ SW TT P TS ++ R SAT+ ALP
Sbjct: 109 EIYWDSWDTTVPREKTSSARSSRSSATFESDDALP 143
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 433 DADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATS 329
D+++ L+ + G + +TTDT TQ+T+ATS
Sbjct: 291 DSESGFNLKWKAEGGAFTERPATTDTTTQTTRATS 325
>SB_6812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 433 DADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATS 329
D+++ L+ + G + +TTDT TQ+T+ATS
Sbjct: 102 DSESGFNLKWKAEGGAFTERPATTDTTTQTTRATS 136
>SB_48069| Best HMM Match : DUF746 (HMM E-Value=4.5)
Length = 232
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 503 TVREVPAPSWSTTDPGWTT 559
T +++P +W T PGWT+
Sbjct: 126 TRKDIPLTNWKTRTPGWTS 144
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 607 RSQRPCCRLSPCLYTRCGPPRVRGTPRWRRYLPHSQDAGHLQDHIFRTRPAGE 449
R + P P R P + + + LP SQD G+L+ + +TRP+ E
Sbjct: 1412 RDREPYDGYPPEDIDRASRPGYKPSGNVVQVLPPSQDPGNLRQSLRKTRPSSE 1464
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,885,418
Number of Sequences: 59808
Number of extensions: 599928
Number of successful extensions: 1657
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -